mRNA_Ecto-sp13_S_contig6953.17957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6953.17957.1
Unique NamemRNA_Ecto-sp13_S_contig6953.17957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 177 bits (450), Expect = 1.330e-51
Identity = 115/214 (53.74%), Postives = 154/214 (71.96%), Query Frame = 1 
Query:   97 VLARFVIMSILRTTSTFVEFAGETVINSTSFIVXXXXXXXXXXXXXXXXXXXXXLNQLVSIWRVVVTIITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTDFQSGVGVKAVIKQSVASFKQSATYIVLGDEGSLTDGLLPNVFFELFKVLPLSFDLGKVILVGTLGVAKEAMSSSASILRELVSLKGISLGCSGKTS 738
            +L RFV+M++LR+ ++ V F GET IN      XXXXXXXXXXXXXXXXXXXXX  QLVS+WR+VVTI+T  LGE+C+L      R+ D F D +LS++AF  G  GLA V+KAQ  D ++GV + ++I Q++ SF  +  YI+ GDE   +DG++PN+F E+FK+LPLSFDLGK+IL GT  ++KE +  + S L+EL SL+GI  GC GK S
Sbjct:   52 ILVRFVVMTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSIISQAIQSFVDTLVYILKGDENKFSDGIVPNLFTEVFKLLPLSFDLGKLILQGTFDISKETLGVAFSSLKELASLRGIVAGCRGKAS 265
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BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.690e-15
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:  118 MSILRTTSTFVEFAGETVINSTSFIVXXXXXXXXXXXXXXXXXXXXXLNQLVSIWRVVVTIITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTDFQSGVGV 471
            M++LR+ ++ V F GET IN      XXXXXXXXXXXXXXXXXXXXX +QLVS+WR+VV IIT  LGE+C+L      R+ D F D +LS++AF  G  GLA V+KAQ  D ++GV V
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNV 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN4_ESV1K1.330e-5153.74EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP64_ECTSI3.690e-1556.78EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6953contigEcto-sp13_S_contig6953:4440..5180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size741
Hectar predicted targeting categorysignal peptide
Exons1
Cds size741
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.1690357-CDS-Ecto-sp13_S_contig6953:4439..51801681463955.1690357-CDS-Ecto-sp13_S_contig6953:4439..5180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6953 4440..5180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6953.17957.1prot_Ecto-sp13_S_contig6953.17957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6953 4440..5180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6953.17957.1

>prot_Ecto-sp13_S_contig6953.17957.1 ID=prot_Ecto-sp13_S_contig6953.17957.1|Name=mRNA_Ecto-sp13_S_contig6953.17957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MLKPIAKILEGVVAGTIALTLSTVSNAILLAVVLARFVIMSILRTTSTFV
EFAGETVINSTSFIVETVFSILTFVVQTVTNSLLFLLNQLVSIWRVVVTI
ITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTD
FQSGVGVKAVIKQSVASFKQSATYIVLGDEGSLTDGLLPNVFFELFKVLP
LSFDLGKVILVGTLGVAKEAMSSSASILRELVSLKGISLGCSGKTS*
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mRNA from alignment at Ecto-sp13_S_contig6953:4440..5180-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6953.17957.1 ID=mRNA_Ecto-sp13_S_contig6953.17957.1|Name=mRNA_Ecto-sp13_S_contig6953.17957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:4440..5180- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGAAGCCGATTGCAAAGATTCTTGAAGGCGTTGTCGCAGGAACGAT
TGCGCTGACTTTGTCAACAGTGTCCAACGCCATTCTTCTTGCCGTGGTGC
TCGCCAGGTTTGTCATTATGTCAATTCTGCGAACCACGTCCACCTTTGTC
GAATTTGCGGGAGAGACTGTGATCAACAGCACGTCTTTCATTGTAGAAAC
GGTGTTCTCGATATTGACATTTGTAGTTCAAACTGTGACCAACTCTCTCC
TTTTCCTACTGAATCAGTTGGTGTCTATATGGAGGGTTGTTGTGACTATC
ATTACGACGCTGCTCGGCGAGTCCTGTTTTCTGACCAAGACTGTTTTCAG
GCGCATGGTCGACGCGTTCAAAGACCTAATTCTGAGCATCAAGGCTTTCG
GAGAAGGGTTCAAGGGGCTAGCTCCCGTTATGAAAGCCCAGACCACAGAC
TTTCAATCGGGGGTCGGCGTCAAGGCGGTGATCAAGCAGAGCGTCGCTTC
CTTTAAGCAATCGGCCACGTACATCGTACTGGGAGACGAGGGTTCATTGA
CCGATGGGCTTCTACCTAACGTTTTTTTCGAGCTGTTCAAGGTCTTACCG
CTGTCGTTTGATTTAGGAAAGGTTATCCTCGTTGGGACGCTTGGCGTAGC
AAAGGAGGCGATGTCTTCCTCGGCATCAATTCTGAGAGAACTTGTTTCCC
TCAAGGGTATTTCACTCGGGTGCAGTGGCAAGACGTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6953:4440..5180-

>mRNA_Ecto-sp13_S_contig6953.17957.1 ID=mRNA_Ecto-sp13_S_contig6953.17957.1|Name=mRNA_Ecto-sp13_S_contig6953.17957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:4440..5180- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGAAGCCGATTGCAAAGATTCTTGAAGGCGTTGTCGCAGGAACGAT
TGCGCTGACTTTGTCAACAGTGTCCAACGCCATTCTTCTTGCCGTGGTGC
TCGCCAGGTTTGTCATTATGTCAATTCTGCGAACCACGTCCACCTTTGTC
GAATTTGCGGGAGAGACTGTGATCAACAGCACGTCTTTCATTGTAGAAAC
GGTGTTCTCGATATTGACATTTGTAGTTCAAACTGTGACCAACTCTCTCC
TTTTCCTACTGAATCAGTTGGTGTCTATATGGAGGGTTGTTGTGACTATC
ATTACGACGCTGCTCGGCGAGTCCTGTTTTCTGACCAAGACTGTTTTCAG
GCGCATGGTCGACGCGTTCAAAGACCTAATTCTGAGCATCAAGGCTTTCG
GAGAAGGGTTCAAGGGGCTAGCTCCCGTTATGAAAGCCCAGACCACAGAC
TTTCAATCGGGGGTCGGCGTCAAGGCGGTGATCAAGCAGAGCGTCGCTTC
CTTTAAGCAATCGGCCACGTACATCGTACTGGGAGACGAGGGTTCATTGA
CCGATGGGCTTCTACCTAACGTTTTTTTCGAGCTGTTCAAGGTCTTACCG
CTGTCGTTTGATTTAGGAAAGGTTATCCTCGTTGGGACGCTTGGCGTAGC
AAAGGAGGCGATGTCTTCCTCGGCATCAATTCTGAGAGAACTTGTTTCCC
TCAAGGGTATTTCACTCGGGTGCAGTGGCAAGACGTCGTAG
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