mRNA_Ecto-sp13_S_contig6953.17956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6953.17956.1
Unique NamemRNA_Ecto-sp13_S_contig6953.17956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6953.17956.1 vs. uniprot
Match: Q8QNN3_ESV1K (EsV-1-28 n=2 Tax=root TaxID=1 RepID=Q8QNN3_ESV1K)

HSP 1 Score: 348 bits (893), Expect = 1.660e-120
Identity = 169/195 (86.67%), Postives = 179/195 (91.79%), Query Frame = 1 
Query:    1 DGIFECRKSEQGENAGSGVFCAKDVKAGTILPYYGITISDEVDVDDDTSGRDNYRTYVISTDYSTKYGTRRTAKGLSVNGDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNPHISRADINHSLLKKVPIPIAYIVVVEDLPRGTELLTWYGNDYGERAYSPCKMNRRTYRQLADRAYPHVDVLPKQTNFY 585
            DGIFECRKS+QGENAGSGVFCA DVKAGTILPYYGITISD+V+V DD    DNYRTYVIS DY TKYGTRRTAKGLSV+GDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNP ISRADIN SLLKKVPIPIAYIVV+E LP GTELLT+YG ++G+RAYS CKMNRRT+RQLADRAY HVD LPKQTNFY
Sbjct:    9 DGIFECRKSKQGENAGSGVFCAHDVKAGTILPYYGITISDDVEVHDDIVSSDNYRTYVISADYCTKYGTRRTAKGLSVDGDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNPRISRADINRSLLKKVPIPIAYIVVLESLPNGTELLTFYGKEFGDRAYSSCKMNRRTHRQLADRAYAHVDALPKQTNFY 203
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BLAST of mRNA_Ecto-sp13_S_contig6953.17956.1 vs. uniprot
Match: A0A6H5KKN2_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN2_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 5.060e-57
Identity = 105/197 (53.30%), Postives = 135/197 (68.53%), Query Frame = 1 
Query:    1 DGIFECRKSEQG--ENAGSGVFCAKDVKAGTILPYYGITISDEVDVDDDTSGR---DNYRTYVISTDYSTKYGTRRTAKGLSVNGDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNPHISRADINHSLLKKVPIPIAYIVVVEDLPRGTELLTWYGNDYGERAYSPCKMNRRTYRQLADRAYPHVDVLPKQT 576
            DG F   K ++   + AG GVFC   V+AGTILPYYG+TI D  D DDD + R   + YRTYV+S DY+ + G +RT +G SV+GDP LP I++L+ +KKLAC+INEAS+G  PNCLL +N  ISRADI  SL +   IP  +IV +EDL RGTEL T YG++YGER Y P KM R   RQ+ D+AY H+    K++
Sbjct:  733 DGTFVVHKQKKSRVQGAGMGVFCVDSVEAGTILPYYGVTIKD--DDDDDRNARCSQEGYRTYVVSADYTNRSGNQRTVEGYSVDGDPSLPVIEELDGFKKLACRINEASDGFAPNCLLVSNRAISRADIKRSLAEHSAIPATFIVTIEDLKRGTELFTCYGDEYGERGYRPSKMKRSRLRQMIDKAYEHMAKRVKKS 927
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BLAST of mRNA_Ecto-sp13_S_contig6953.17956.1 vs. uniprot
Match: Q6XLU0_9PHYC (FirrV-1-J1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU0_9PHYC)

HSP 1 Score: 97.4 bits (241), Expect = 6.400e-21
Identity = 59/178 (33.15%), Postives = 100/178 (56.18%), Query Frame = 1 
Query:   43 AGSGVFCAKDVKAGTILPYYGITISDEVDVDDDTSGRDNYRTYVISTDYS-TKYGTRRTAKGLSVNGDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNPHISRADINHSLLKKVPIPIAYIVVVEDLPRGTELLTWYGNDYGERAYSPCKMNRRTYRQLADRAYPHVDVLPKQ 573
            AG GV   + ++AGT+LPYY + I     +D+D        TY +S  Y+ +K G  +    +  +G+P+L  ++K  +  + A  +NEAS    PNC+L TNP +S+ DI+ +  ++ P+  + +VV   +P GTELLT YG+ Y  R Y+P   +++    L D A+  +D + ++
Sbjct:  126 AGVGVVTKRALEAGTVLPYY-VVIRKMSAIDEDVDD-----TYFMSVTYTNSKDGREKCLTNMVGDGNPQLKVLKKQPRNYRTAPYVNEASGNTPPNCILVTNPALSKKDISKAYRRETPVLSSLLVVPHPIPAGTELLTLYGDSYS-RDYAPWSGSKKERALLVDLAHDIIDNVQQE 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6953.17956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNN3_ESV1K1.660e-12086.67EsV-1-28 n=2 Tax=root TaxID=1 RepID=Q8QNN3_ESV1K[more]
A0A6H5KKN2_9PHAE5.060e-5753.30SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XLU0_9PHYC6.400e-2133.15FirrV-1-J1 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6953contigEcto-sp13_S_contig6953:3803..4393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-28 SET domain protein
Ec32 orthologEc-06_006470.1
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.1165144-CDS-Ecto-sp13_S_contig6953:3802..43931681463955.1165144-CDS-Ecto-sp13_S_contig6953:3802..4393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6953 3803..4393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6953.17956.1prot_Ecto-sp13_S_contig6953.17956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6953 3803..4393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6953.17956.1

>prot_Ecto-sp13_S_contig6953.17956.1 ID=prot_Ecto-sp13_S_contig6953.17956.1|Name=mRNA_Ecto-sp13_S_contig6953.17956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
DGIFECRKSEQGENAGSGVFCAKDVKAGTILPYYGITISDEVDVDDDTSG
RDNYRTYVISTDYSTKYGTRRTAKGLSVNGDPRLPRIQKLEKYKKLACQI
NEASEGCLPNCLLTTNPHISRADINHSLLKKVPIPIAYIVVVEDLPRGTE
LLTWYGNDYGERAYSPCKMNRRTYRQLADRAYPHVDVLPKQTNFYT*
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mRNA from alignment at Ecto-sp13_S_contig6953:3803..4393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6953.17956.1 ID=mRNA_Ecto-sp13_S_contig6953.17956.1|Name=mRNA_Ecto-sp13_S_contig6953.17956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:3803..4393- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGTATTTTCGAGTGTAGGAAATCCGAGCAAGGTGAGAACGCCGGGTC
TGGTGTTTTCTGCGCGAAAGACGTGAAGGCCGGCACGATCTTACCCTACT
ACGGCATCACCATAAGTGACGAGGTCGATGTGGACGATGACACTTCGGGA
AGAGACAATTATCGCACATACGTTATCTCCACGGACTACTCCACAAAATA
TGGAACACGGCGGACTGCCAAAGGTTTATCCGTGAATGGCGACCCTCGAC
TGCCTCGGATTCAGAAATTGGAAAAGTACAAGAAATTGGCGTGCCAAATC
AATGAGGCCAGCGAAGGCTGTCTGCCAAACTGTTTGTTGACAACCAACCC
CCACATATCCAGGGCGGACATCAACCATTCTCTCTTGAAAAAGGTACCGA
TCCCGATAGCCTACATTGTTGTCGTCGAAGACCTTCCGCGGGGAACAGAA
TTGTTGACGTGGTACGGAAACGACTATGGTGAAAGGGCATATTCTCCGTG
CAAAATGAACCGGCGAACGTATCGCCAGCTGGCCGACAGAGCTTACCCAC
ACGTCGACGTGTTGCCCAAACAAACCAATTTTTACACTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6953:3803..4393-

>mRNA_Ecto-sp13_S_contig6953.17956.1 ID=mRNA_Ecto-sp13_S_contig6953.17956.1|Name=mRNA_Ecto-sp13_S_contig6953.17956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:3803..4393- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGTATTTTCGAGTGTAGGAAATCCGAGCAAGGTGAGAACGCCGGGTC
TGGTGTTTTCTGCGCGAAAGACGTGAAGGCCGGCACGATCTTACCCTACT
ACGGCATCACCATAAGTGACGAGGTCGATGTGGACGATGACACTTCGGGA
AGAGACAATTATCGCACATACGTTATCTCCACGGACTACTCCACAAAATA
TGGAACACGGCGGACTGCCAAAGGTTTATCCGTGAATGGCGACCCTCGAC
TGCCTCGGATTCAGAAATTGGAAAAGTACAAGAAATTGGCGTGCCAAATC
AATGAGGCCAGCGAAGGCTGTCTGCCAAACTGTTTGTTGACAACCAACCC
CCACATATCCAGGGCGGACATCAACCATTCTCTCTTGAAAAAGGTACCGA
TCCCGATAGCCTACATTGTTGTCGTCGAAGACCTTCCGCGGGGAACAGAA
TTGTTGACGTGGTACGGAAACGACTATGGTGAAAGGGCATATTCTCCGTG
CAAAATGAACCGGCGAACGTATCGCCAGCTGGCCGACAGAGCTTACCCAC
ACGTCGACGTGTTGCCCAAACAAACCAATTTTTACACTTAA
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