mRNA_Ecto-sp13_S_contig6953.17954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6953.17954.1
Unique NamemRNA_Ecto-sp13_S_contig6953.17954.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6953.17954.1 vs. uniprot
Match: Q8QNN1_ESV1K (EsV-1-30 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN1_ESV1K)

HSP 1 Score: 303 bits (776), Expect = 7.580e-102
Identity = 149/171 (87.13%), Postives = 163/171 (95.32%), Query Frame = 1 
Query:    1 MSDIVFGSNDLLSEILSFRRRDEYLFVGTVNKAFHSLFHSRQTNVALCVETVSRLQDSEIQSLENSNHVMRCGSVDVMRHALSSGLVDNLNGAIEHAIRSNDGSLITILEKEFHESRIGPACLVAAVESGSLALVQKYCVDGVLDARAVNFGLEDNFFYPFDMTAKRMICR 513
            MSDIVFG+NDLLSEILSF RRDEYLFVGTVNKAFH+L+H+RQTNVA+CVETVS L+DS IQSL NSNHVM+CGSVDVMRHALSSGLVDNLNGA+EHAIRSND  +IT+LEKEFHE+RIGPACLVAAVESGSLALVQKYCVDGVLDARA NFGLED++ YPFDM+AKRMICR
Sbjct:    1 MSDIVFGNNDLLSEILSFGRRDEYLFVGTVNKAFHALYHARQTNVAVCVETVSCLKDSGIQSLRNSNHVMQCGSVDVMRHALSSGLVDNLNGALEHAIRSNDCDMITVLEKEFHETRIGPACLVAAVESGSLALVQKYCVDGVLDARAANFGLEDSYCYPFDMSAKRMICR 171
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BLAST of mRNA_Ecto-sp13_S_contig6953.17954.1 vs. uniprot
Match: D8LP67_ECTSI (EsV-1-30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP67_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.100e-54
Identity = 85/102 (83.33%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:  208 MRCGSVDVMRHALSSGLVDNLNGAIEHAIRSNDGSLITILEKEFHESRIGPACLVAAVESGSLALVQKYCVDGVLDARAVNFGLEDNFFYPFDMTAKRMICR 513
            M+CGS++VMRHA+SSGLVDNLNGA+EHAIRSND  +IT+L+ EFHE+RIGPACLVAAVESG+LALVQKYCVDGVLDA A NFGLED+F YPFDMTAKRMICR
Sbjct:    1 MQCGSIEVMRHAMSSGLVDNLNGALEHAIRSNDCDMITVLDNEFHETRIGPACLVAAVESGALALVQKYCVDGVLDASAANFGLEDSFCYPFDMTAKRMICR 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6953.17954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN1_ESV1K7.580e-10287.13EsV-1-30 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP67_ECTSI1.100e-5483.33EsV-1-30 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6953contigEcto-sp13_S_contig6953:1174..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size513
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-30 ankyrin-repeat protein
Ec32 orthologEc-06_006450.1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.0447936-CDS-Ecto-sp13_S_contig6953:1173..16861681463955.0447936-CDS-Ecto-sp13_S_contig6953:1173..1686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6953 1174..1686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6953.17954.1prot_Ecto-sp13_S_contig6953.17954.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6953 1174..1686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6953.17954.1

>prot_Ecto-sp13_S_contig6953.17954.1 ID=prot_Ecto-sp13_S_contig6953.17954.1|Name=mRNA_Ecto-sp13_S_contig6953.17954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MSDIVFGSNDLLSEILSFRRRDEYLFVGTVNKAFHSLFHSRQTNVALCVE
TVSRLQDSEIQSLENSNHVMRCGSVDVMRHALSSGLVDNLNGAIEHAIRS
NDGSLITILEKEFHESRIGPACLVAAVESGSLALVQKYCVDGVLDARAVN
FGLEDNFFYPFDMTAKRMICR
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mRNA from alignment at Ecto-sp13_S_contig6953:1174..1686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6953.17954.1 ID=mRNA_Ecto-sp13_S_contig6953.17954.1|Name=mRNA_Ecto-sp13_S_contig6953.17954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:1174..1686- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGACATTGTTTTCGGCAGCAACGATCTGCTATCAGAGATTCTCTC
GTTTAGGCGACGAGACGAGTATTTGTTTGTCGGCACGGTGAACAAAGCGT
TCCACTCTCTTTTTCATTCCCGACAAACAAACGTGGCTTTGTGCGTCGAG
ACTGTTTCTCGCTTGCAGGATTCGGAAATCCAATCCCTTGAAAACAGCAA
CCATGTGATGCGATGCGGCTCGGTCGACGTAATGCGGCACGCATTGTCCT
CGGGTCTGGTCGACAACTTAAACGGGGCCATCGAGCACGCCATTCGATCC
AATGACGGTTCCCTGATCACAATTCTAGAGAAGGAGTTCCACGAGTCAAG
AATCGGCCCGGCGTGCTTGGTGGCCGCGGTCGAATCAGGTTCTCTTGCTC
TTGTTCAAAAGTACTGCGTGGACGGCGTGCTCGATGCCAGAGCCGTCAAC
TTCGGCCTTGAGGACAATTTCTTTTATCCTTTCGACATGACCGCCAAACG
AATGATCTGTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6953:1174..1686-

>mRNA_Ecto-sp13_S_contig6953.17954.1 ID=mRNA_Ecto-sp13_S_contig6953.17954.1|Name=mRNA_Ecto-sp13_S_contig6953.17954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:1174..1686- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGACATTGTTTTCGGCAGCAACGATCTGCTATCAGAGATTCTCTC
GTTTAGGCGACGAGACGAGTATTTGTTTGTCGGCACGGTGAACAAAGCGT
TCCACTCTCTTTTTCATTCCCGACAAACAAACGTGGCTTTGTGCGTCGAG
ACTGTTTCTCGCTTGCAGGATTCGGAAATCCAATCCCTTGAAAACAGCAA
CCATGTGATGCGATGCGGCTCGGTCGACGTAATGCGGCACGCATTGTCCT
CGGGTCTGGTCGACAACTTAAACGGGGCCATCGAGCACGCCATTCGATCC
AATGACGGTTCCCTGATCACAATTCTAGAGAAGGAGTTCCACGAGTCAAG
AATCGGCCCGGCGTGCTTGGTGGCCGCGGTCGAATCAGGTTCTCTTGCTC
TTGTTCAAAAGTACTGCGTGGACGGCGTGCTCGATGCCAGAGCCGTCAAC
TTCGGCCTTGAGGACAATTTCTTTTATCCTTTCGACATGACCGCCAAACG
AATGATCTGTCGA
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