prot_Ecto-sp13_S_contig6950.17951.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6950.17951.1
Unique Nameprot_Ecto-sp13_S_contig6950.17951.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length119
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.210e-20
Identity = 56/112 (50.00%), Postives = 67/112 (59.82%), Query Frame = 0 
Query:    2 LLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV-PQEEHRLSKCTRARGVGSPGRSSWGEEARG-AWSFYDDDALCVRVDESSGVSGRPPLSHLAVS 111
            LLEFN+ WNLRMM++NRGLPAA GG  N+YL   IQRDTAD +SS PV P+    +         G   RS WG E  G  W   D+DA C   D  S V+GR P+S L +S
Sbjct:  684 LLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLE-RSLWGGERDGEVWGIADNDAFCTD-DGDSDVNGRTPMSDLTLS 793
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.250e-12
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 0 
Query:    1 MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPQ 51
            MLLEFN  WNLRMMV+NRGLPAA GG  N Y G+LIQR         P PQ
Sbjct:    1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQRAMGTGSRVAPSPQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE3.210e-2050.003'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L7E8_9PHAE6.250e-1262.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6950contigEcto-sp13_S_contig6950:5148..5504 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6950.17951.1mRNA_Ecto-sp13_S_contig6950.17951.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6950 4905..5763 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6950.17951.1 ID=prot_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVP
QEEHRLSKCTRARGVGSPGRSSWGEEARGAWSFYDDDALCVRVDESSGVS
GRPPLSHLAVSPSDSRQG*
back to top