prot_Ecto-sp13_S_contig12109.1794.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12109.1794.1
Unique Nameprot_Ecto-sp13_S_contig12109.1794.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length83
Homology
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A2Z7B3C3_9LAMI (Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3C3_9LAMI)

HSP 1 Score: 56.6 bits (135), Expect = 7.730e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A+AA++VLRVY  RG+Y+++Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAAAAIYVLRVYFGRGFYIISYGIGIYILNLLIGFLSPKVDPEIEALDGAS 95          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A4D8YZI5_SALSN (Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4D8YZI5_SALSN)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLSERRRH 61
            RWL+  A+AA+++LRVY  RG+YV++Y + I +LN  +  ++P+V P+ E L G S   +H
Sbjct:   40 RWLVTLAAAAIYILRVYYARGFYVISYGLSIYILNLLIGFLSPKVDPELELLDGPSSPTKH 100          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A830CVV9_9LAMI (Protein RER1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CVV9_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 5.590e-7
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A+AA++VLRVY  RG+YV++Y +GI +LN  +  ++P+V P+ + L G S
Sbjct:   39 RWLGTLAAAAIYVLRVYYVRGFYVISYGLGIYILNLLIGFMSPKVDPELDVLDGAS 94          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A834WQD1_9FABA (Protein RER1B-like n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WQD1_9FABA)

HSP 1 Score: 54.7 bits (130), Expect = 8.330e-7
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A AA++VLRVY  RG+YVV+Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVAAIYVLRVYYVRGFYVVSYGLGIYILNLLIGFMSPKVDPELEVLDGAS 95          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI001BF5899A (protein RER1B-like n=2 Tax=Juglandaceae TaxID=16714 RepID=UPI001BF5899A)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A A V+VLRVY+ +G+YV++Y VGI VLN  +  ++P++ P+ + L G S
Sbjct:   39 RWLGTLAVAIVYVLRVYSVKGFYVISYGVGIYVLNLLIGFLSPKIDPELQALDGAS 94          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A834ZC34_9MAGN (Protein RER1 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZC34_9MAGN)

HSP 1 Score: 53.1 bits (126), Expect = 1.550e-6
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A A ++VLRVY  +G+Y+VAY +GI VLN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVALIYVLRVYYVQGFYIVAYGLGIYVLNLLIGFLSPKVDPELEALDGAS 95          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A2I4FCP1_JUGRE (protein RER1B-like n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4FCP1_JUGRE)

HSP 1 Score: 53.5 bits (127), Expect = 1.810e-6
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A A V+VLRVY+ +G+YV++Y VGI VLN  +  ++P++ P+ + L G S
Sbjct:  103 RWLGTLAVAMVYVLRVYSVKGFYVISYGVGIYVLNLLIGFLSPKIDPELQALDGAS 158          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI0010A348B1 (protein RER1B-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A348B1)

HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL     AA++VLRVY  RG+Y+V+Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLVVAAIYVLRVYYVRGFYIVSYGLGIYILNLLIGFMSPKVDPELEVLDGAS 95          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI000D631624 (protein RER1B-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D631624)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A AAV++LRVY  RG+Y+++Y +GI  LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVAAVYILRVYYLRGFYIISYGLGIYTLNLLIGFLSPKVDPELEGLDGAS 95          
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A124SDY2_CYNCS (Retrieval of early ER protein Rer1 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A124SDY2_CYNCS)

HSP 1 Score: 52.8 bits (125), Expect = 4.160e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 56
            RWL   A AAV++LRVY  RG+Y+++Y +GI  LN  +  ++P+V P+ E L G S
Sbjct:   53 RWLGTLAVAAVYILRVYYLRGFYIISYGLGIYTLNLLIGFLSPKVDPELEGLDGAS 108          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2Z7B3C3_9LAMI7.730e-846.43Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxI... [more]
A0A4D8YZI5_SALSN1.080e-742.62Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4... [more]
A0A830CVV9_9LAMI5.590e-746.43Protein RER1 n=1 Tax=Phtheirospermum japonicum Tax... [more]
A0A834WQD1_9FABA8.330e-750.00Protein RER1B-like n=1 Tax=Senna tora TaxID=362788... [more]
UPI001BF5899A1.110e-646.43protein RER1B-like n=2 Tax=Juglandaceae TaxID=1671... [more]
A0A834ZC34_9MAGN1.550e-648.21Protein RER1 n=1 Tax=Tetracentron sinense TaxID=13... [more]
A0A2I4FCP1_JUGRE1.810e-646.43protein RER1B-like n=1 Tax=Juglans regia TaxID=512... [more]
UPI0010A348B11.910e-646.43protein RER1B-like n=2 Tax=Prosopis alba TaxID=207... [more]
UPI000D6316242.090e-646.43protein RER1B-like n=1 Tax=Cynara cardunculus var.... [more]
A0A124SDY2_CYNCS4.160e-646.43Retrieval of early ER protein Rer1 n=1 Tax=Cynara ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004932Retrieval of early ER protein Rer1PFAMPF03248Rer1coord: 1..51
e-value: 5.0E-12
score: 45.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..82
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12109contigEcto-sp13_S_contig12109:3527..5080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12109.1794.1mRNA_Ecto-sp13_S_contig12109.1794.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12109 3527..5080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12109.1794.1 ID=prot_Ecto-sp13_S_contig12109.1794.1|Name=mRNA_Ecto-sp13_S_contig12109.1794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAE
RLRGLSERRRHRFSSNERLVYPRTSHTAVDGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1