mRNA_Ecto-sp13_S_contig6947.17944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6947.17944.1
Unique NamemRNA_Ecto-sp13_S_contig6947.17944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6947.17944.1 vs. uniprot
Match: A0A6H5KR63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR63_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 9.920e-36
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    7 QGALAGWMMISPPSRTGWTENTMGAKVPVPSSRVKERVSLGSVDSSPKNPRREIAKANHGKTLRAAFVAMANLRQKK 237
            QG LAGWMMIS PSRT W ENTMGAKVPVPSSR KERVSLGS+DSSPKNPRREIA ANHGK LRAAFVAMAN RQKK
Sbjct:    2 QGGLAGWMMISAPSRTEWAENTMGAKVPVPSSRAKERVSLGSIDSSPKNPRREIAMANHGKALRAAFVAMANARQKK 78
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BLAST of mRNA_Ecto-sp13_S_contig6947.17944.1 vs. uniprot
Match: D7FMJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.670e-19
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:   73 MGAKVPVPSSRVKERVSLGSVDSSPKNPRREIAKANHGKTLRAAFVAMANLRQKK 237
            M AK PVPSSR KE+VSLGS+DSSPKNPRREIAKANHGK LRAAFVAMAN R +K
Sbjct:    1 MRAKAPVPSSRAKEKVSLGSIDSSPKNPRREIAKANHGKALRAAFVAMANARPEK 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6947.17944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR63_9PHAE9.920e-3688.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMJ2_ECTSI9.670e-1983.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6947contigEcto-sp13_S_contig6947:6117..6881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size446
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.805063-UTR-Ecto-sp13_S_contig6947:6116..61721681463953.805063-UTR-Ecto-sp13_S_contig6947:6116..6172Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6947 6117..6172 +
1681463953.8378313-UTR-Ecto-sp13_S_contig6947:6821..68811681463953.8378313-UTR-Ecto-sp13_S_contig6947:6821..6881Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6947 6822..6881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.8162186-CDS-Ecto-sp13_S_contig6947:6172..62071681463953.8162186-CDS-Ecto-sp13_S_contig6947:6172..6207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6947 6173..6207 +
1681463953.8265293-CDS-Ecto-sp13_S_contig6947:6526..68211681463953.8265293-CDS-Ecto-sp13_S_contig6947:6526..6821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6947 6527..6821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6947.17944.1prot_Ecto-sp13_S_contig6947.17944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6947 6173..6821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6947.17944.1

>prot_Ecto-sp13_S_contig6947.17944.1 ID=prot_Ecto-sp13_S_contig6947.17944.1|Name=mRNA_Ecto-sp13_S_contig6947.17944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MDGKHDGSKSARPKLKSERKGLLRLRRLLAQESQARNCEGESWEDPPGGI
RSHGQLKAKEGWVGHAVMSDERLASGLCHVLVKGVLYRKSAFMKMPTLFN
GRLDETLLP*
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mRNA from alignment at Ecto-sp13_S_contig6947:6117..6881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6947.17944.1 ID=mRNA_Ecto-sp13_S_contig6947.17944.1|Name=mRNA_Ecto-sp13_S_contig6947.17944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6947:6117..6881+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAAGCAAGGGGCCTTGGCCGGTTGGATGATGATTTCGCCACCCTCAAG
GACGGGATGGACGGAAAACACGATGGGAGCAAAAGTGCCCGGTGAGAAGG
GAGGACGTTCGGTGCTAGGAATGGTAACCCTGGTGGCAGTATTTGTTCCG
ATGCTTGGCAACGGTCATCGCCTTGGGTGGTCGTTGTTTTCACATGATCA
ATGTCGCGTTCTCTACAGAGCTATTTTGCCTTACCCGAGGCCCCACGATG
TTTCTCTGAAAGAGCTGTCACGACTCCGTTTTCCTCTGCCTTCGCACGGT
GATCGCCCCCTTAAGTAGACGGTTTTGCGGTTCAGTCCCCGTTGTAAAGA
GGAGGAACATGCGCGTCGTTGTTCACACTCGCATCAAACCACCCGTTAAA
CGGCCGGCAGTCCCAAGCTCAAGAGTGAAAGAAAGGGTCTCCTTAGGCTC
CGTCGACTCCTCGCCCAAGAATCCCAGGCGCGAAATTGCGAAGGCGAATC
ATGGGAAGACCCTCCGGGCGGCATTCGTAGCCATGGCCAACTTAAGGCAA
AAGAAGGGTGGGTGGGTCATGCAGTGATGAGTGACGAGCGACTAGCAAGC
GGGCTGTGTCATGTTTTGGTGAAGGGCGTGCTGTACAGAAAGTCCGCATT
CATGAAGATGCCGACTCTATTCAATGGTCGGTTGGACGAGACGCTTCTTC
CATGACGCGGAAGTAGACGTAACCTCAGTGCACAATTATACTCCTCTACT
CTTGTCCTGGCACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6947:6117..6881+

>mRNA_Ecto-sp13_S_contig6947.17944.1 ID=mRNA_Ecto-sp13_S_contig6947.17944.1|Name=mRNA_Ecto-sp13_S_contig6947.17944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6947:6117..6881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGGAAAACACGATGGGAGCAAAAGTGCCCGTCCCAAGCTCAAGAG
TGAAAGAAAGGGTCTCCTTAGGCTCCGTCGACTCCTCGCCCAAGAATCCC
AGGCGCGAAATTGCGAAGGCGAATCATGGGAAGACCCTCCGGGCGGCATT
CGTAGCCATGGCCAACTTAAGGCAAAAGAAGGGTGGGTGGGTCATGCAGT
GATGAGTGACGAGCGACTAGCAAGCGGGCTGTGTCATGTTTTGGTGAAGG
GCGTGCTGTACAGAAAGTCCGCATTCATGAAGATGCCGACTCTATTCAAT
GGTCGGTTGGACGAGACGCTTCTTCCATGA
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