prot_Ecto-sp13_S_contig6946.17943.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6946.17943.1
Unique Nameprot_Ecto-sp13_S_contig6946.17943.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length408
Homology
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 2.650e-103
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
Query:  255 DEENLLSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 407
            DEE+LLSPDEYLEMMQYIEEACKEED RAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL
Sbjct:   20 DEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172          
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: A0A6H5KTE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 4.450e-102
Identity = 229/294 (77.89%), Postives = 234/294 (79.59%), Query Frame = 0
Query:    1 MSPLDKDQLKRRCLERVRTERSRLMARMRGRKGAEEEARQLSSHAGGDSGSPPTAAAGQEENLSSPGQHSLSSAREILRQGLSELSGGNGDINKRRRPQHHPRNHERTALGYEDFGASPVRLDSNGXXXXXXXXXXXXXXXXXXXXXXX-----FLSAIEEENASYLNACARGQGDSLRQRGPRDGTAADLAPMSTSLREQTQGFVEGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---EENLLSPDEYLEMMQYIEEACKEEDLRAEAA 286
            MSPLDKDQLKRRCLERVRTERSRLMARMRGRKG EEEARQL  HAGG+SGSP TAAA Q ENLSSPG HSLSSAREILR+GLSELSGGNGD NKRRR QHHP NHERTALG E+FGAS  RLDSNGXXXXXXXXXXXXXXXXXXX         FLSAIEEENASYLNACARGQG SL+QRGPRDGTAA+LAPMS S REQTQGFVEGN                XXXXXXXXXXXXXXXXXX                D   EENLLSPDEYLEMMQYIEEACKEEDLRAEAA
Sbjct:   21 MSPLDKDQLKRRCLERVRTERSRLMARMRGRKGTEEEARQLFGHAGGNSGSPLTAAAAQGENLSSPGHHSLSSAREILREGLSELSGGNGDTNKRRRQQHHPTNHERTALGCEEFGASLTRLDSNGXXXXXXXXXXXXXXXXXXXHAGGSESLSFLSAIEEENASYLNACARGQGGSLQQRGPRDGTAAELAPMSISFREQTQGFVEGNNDEDDALMAHDDGHAQXXXXXXXXXXXXXXXXXXMVDEDELGWGDGGGAEDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEAA 314          
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.340e-21
Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = 0
Query:  260 LSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEE------VEYAVASLDDINGNG-QDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 407
            L+P+EY +MM +IE+A   E  RA+A+                        A A+ +  +G G +DD VLCPVCK  +LL  G   A+I+C CGFRL T G+ + L   +Q LA+ +++H   C  +P+F V    G  +LWS C  CGF ++VL
Sbjct:    5 LTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRGWRDDEVLCPVCKGGWLLQHG---ATIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHRERCHLQPTFRVREEFGAAMLWSECSACGFEQIVL 156          
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: A0A7S0VBY7_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBY7_9CRYP)

HSP 1 Score: 67.4 bits (163), Expect = 1.230e-9
Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 0
Query:  256 EENLLSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYL-LHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEH-STACSAEPSFVVEGAPG-FDVLWSSCDGCGFARVVL 407
            EE+ LS +EY+ +MQY+EEA   E  + E  ++         ++E  E    +     G+     V CPVC RD L  H       + C CG RL    +++ L   +  L D ++ H S+ C+ +P   ++  PG  D+L  +C  C F  VV+
Sbjct:   31 EEDGLSEEEYIGLMQYLEEAVVTELRKQEQEII----AQELFDQERAESNALAASHAEGH----RVTCPVCMRDTLHSHRNV----VFCGCGMRLSCQTEQVSLVQLESMLLDRFAAHTSSGCANQPVCSIQTVPGGVDMLMMACAACDFMDVVV 173          
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: D8R075_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML)

HSP 1 Score: 64.7 bits (156), Expect = 2.840e-8
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 0
Query:  260 LSPDEY----LEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDR----LGLEHFKQQLADTYSEH-STACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 407
            LSP EY    L M   + +    E  +     LEDYE    LE+     ++ASL  +  N Q++ VLCP+C+R +LL       SI C+    LD G  R    +G+E  + +LA+   +H S+ CS++P F  +    F  L+  C+ C F  VV+
Sbjct:   87 LSPQEYEDLMLAMQAVLYQGTYPEQQQHAIDDLEDYEKATALEDS----SLASL--LEQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 232          
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Match: UPI000D1C7D68 (uncharacterized protein LOC9653983 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7D68)

HSP 1 Score: 64.3 bits (155), Expect = 8.130e-8
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 0
Query:  288 LEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDR----LGLEHFKQQLADTYSEH-STACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 407
            LEDYE    LE+     ++ASL  +  N Q++ VLCP+C+R +LL       SI C+    LD G  R    +G+E  + +LA+   +H S+ CS++P F  +    F  L+  C+ C F  VV+
Sbjct:  190 LEDYEKATALEDS----SLASL--LEQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6946.17943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LF43_ECTSI2.650e-10398.69RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A6H5KTE2_9PHAE4.450e-10277.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX80_9STRA4.340e-2137.42Replication protein A interacting C-terminal-domai... [more]
A0A7S0VBY7_9CRYP1.230e-930.32Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
D8R075_SELML2.840e-833.12Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
UPI000D1C7D688.130e-835.20uncharacterized protein LOC9653983 n=1 Tax=Selagin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 322..404
e-value: 9.4E-22
score: 77.4
IPR028158RPA-interacting protein, N-terminal domainPFAMPF14766RPA_interact_Ncoord: 6..30
e-value: 7.2E-6
score: 25.5
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 228..407
coord: 3..91
NoneNo IPR availablePRODOMPD472859coord: 309..407
e-value: 1.0E-6
score: 127.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6946contigEcto-sp13_S_contig6946:4814..7362 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6946.17943.1mRNA_Ecto-sp13_S_contig6946.17943.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6946 3416..7379 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6946.17943.1 ID=prot_Ecto-sp13_S_contig6946.17943.1|Name=mRNA_Ecto-sp13_S_contig6946.17943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=408bp
MSPLDKDQLKRRCLERVRTERSRLMARMRGRKGAEEEARQLSSHAGGDSG
SPPTAAAGQEENLSSPGQHSLSSAREILRQGLSELSGGNGDINKRRRPQH
HPRNHERTALGYEDFGASPVRLDSNGGGRQQQQQPQQQQQHAGGSESSSF
LSAIEEENASYLNACARGQGDSLRQRGPRDGTAADLAPMSTSLREQTQGF
VEGNNDDDDALMAHDGGDAQQPRQPQQQQQQQPEAMVDEDEVGWGDGGGA
EDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEAAVLEDYELTRRLEEE
EVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLD
TGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGC
GFARVVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028158RPA_interact_N_dom
IPR028156RIP