mRNA_Ecto-sp13_S_contig69439.17941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69439.17941.1
Unique NamemRNA_Ecto-sp13_S_contig69439.17941.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69439.17941.1 vs. uniprot
Match: D7G603_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G603_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-18
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QTQHVSRQTPPFASAHHPPTPAPQHPNRTATRFSEGIEEVLNTLAERVIKRHPTVGYMRNTIQSYQDLRRMAPGRG 228
            Q+ HV RQ PP      PP+ A  H NR AT+F+EGIE++L+TLAERV+ RHP+VGYMR TI  Y DL+R APG+G
Sbjct:  158 QSHHVHRQPPPPLPGV-PPSYAVHHANRNATQFNEGIEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 232
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BLAST of mRNA_Ecto-sp13_S_contig69439.17941.1 vs. uniprot
Match: D7G5U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.760e-17
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 QTQHVSRQTPPFASAHHPPTPAPQHPNRTATRFSEGIEEVLNTLAERVIKRHPTVGYMRNTIQSYQDLRRMAPGRG 228
            Q+ HV RQ PP      PP+ A  H NR AT+F+EG E++L+TLAERV+ RHP+VGYMR TI  Y DL+R APG+G
Sbjct:  159 QSHHVHRQPPPPLPGV-PPSYAVHHANRNATQFNEGTEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69439.17941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G603_ECTSI1.150e-1859.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5U4_ECTSI1.760e-1757.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69439contigEcto-sp13_S_contig69439:16..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.5946763-UTR-Ecto-sp13_S_contig69439:15..251681463953.5946763-UTR-Ecto-sp13_S_contig69439:15..25Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69439 16..25 +
1681463953.6299596-UTR-Ecto-sp13_S_contig69439:465..5481681463953.6299596-UTR-Ecto-sp13_S_contig69439:465..548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69439 466..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.60389-CDS-Ecto-sp13_S_contig69439:25..1211681463953.60389-CDS-Ecto-sp13_S_contig69439:25..121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69439 26..121 +
1681463953.6141937-CDS-Ecto-sp13_S_contig69439:426..4651681463953.6141937-CDS-Ecto-sp13_S_contig69439:426..465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69439 427..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69439.17941.1prot_Ecto-sp13_S_contig69439.17941.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69439 26..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69439.17941.1

>prot_Ecto-sp13_S_contig69439.17941.1 ID=prot_Ecto-sp13_S_contig69439.17941.1|Name=mRNA_Ecto-sp13_S_contig69439.17941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MFPGRLRRLRQPITLLLLPRSTPTGPRPGLARGSRRSSTLWRNE*
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mRNA from alignment at Ecto-sp13_S_contig69439:16..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69439.17941.1 ID=mRNA_Ecto-sp13_S_contig69439.17941.1|Name=mRNA_Ecto-sp13_S_contig69439.17941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69439:16..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTCAACATGTTTCCAGGCAGACTCCGCCGTTTGCGTCAGCCCATCA
CCCTCCTACTCCTGCCCCGCAGCACCCCAACCGGACCGCGACCAGGTTTA
GCGAGGGTAAGAACCTCGCACTTGGCGTTCCGAACGAGCCGAACACCTCC
TGAAAGTGCTTCCCATACTCCACAATGCCTCTCGCTTTGACTGTATCCTT
TGACCGGAGCTGTTTCCAACCGACCCTCGCTTGGGCAATTGGAAGATTGT
AGTCGTTCAAGTCGAGGTAACTGTTGCAACTCTCGCCAGTCTCAGTAGGT
CGGGCAGGGAGCCTTGTAACATTGTACCTAAACCTACAAGCTGTCCGGAC
TATAATCACCTAACGTGTCCCGTTTACTATTTTCACACGCCCGTCATCTT
GCAACTACCAGGGATCGAGGAGGTCCTCAACACTCTGGCGGAACGAGTGA
TAAAGAGACATCCTACGGTGGGATACATGCGGAACACTATCCAGTCTTAC
CAAGACCTCAGGCGCATGGCACCAGGACGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69439:16..548+

>mRNA_Ecto-sp13_S_contig69439.17941.1 ID=mRNA_Ecto-sp13_S_contig69439.17941.1|Name=mRNA_Ecto-sp13_S_contig69439.17941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69439:16..548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCCAGGCAGACTCCGCCGTTTGCGTCAGCCCATCACCCTCCTACT
CCTGCCCCGCAGCACCCCAACCGGACCGCGACCAGGTTTAGCGAGGGGAT
CGAGGAGGTCCTCAACACTCTGGCGGAACGAGTGA
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