mRNA_Ecto-sp13_S_contig12109.1794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12109.1794.1
Unique NamemRNA_Ecto-sp13_S_contig12109.1794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A2Z7B3C3_9LAMI (Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3C3_9LAMI)

HSP 1 Score: 56.6 bits (135), Expect = 7.730e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A+AA++VLRVY  RG+Y+++Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAAAAIYVLRVYFGRGFYIISYGIGIYILNLLIGFLSPKVDPEIEALDGAS 95
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A4D8YZI5_SALSN (Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4D8YZI5_SALSN)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLSERRRH 183
            RWL+  A+AA+++LRVY  RG+YV++Y + I +LN  +  ++P+V P+ E L G S   +H
Sbjct:   40 RWLVTLAAAAIYILRVYYARGFYVISYGLSIYILNLLIGFLSPKVDPELELLDGPSSPTKH 100
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A830CVV9_9LAMI (Protein RER1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CVV9_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 5.590e-7
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A+AA++VLRVY  RG+YV++Y +GI +LN  +  ++P+V P+ + L G S
Sbjct:   39 RWLGTLAAAAIYVLRVYYVRGFYVISYGLGIYILNLLIGFMSPKVDPELDVLDGAS 94
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A834WQD1_9FABA (Protein RER1B-like n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WQD1_9FABA)

HSP 1 Score: 54.7 bits (130), Expect = 8.330e-7
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A AA++VLRVY  RG+YVV+Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVAAIYVLRVYYVRGFYVVSYGLGIYILNLLIGFMSPKVDPELEVLDGAS 95
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI001BF5899A (protein RER1B-like n=2 Tax=Juglandaceae TaxID=16714 RepID=UPI001BF5899A)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A A V+VLRVY+ +G+YV++Y VGI VLN  +  ++P++ P+ + L G S
Sbjct:   39 RWLGTLAVAIVYVLRVYSVKGFYVISYGVGIYVLNLLIGFLSPKIDPELQALDGAS 94
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A834ZC34_9MAGN (Protein RER1 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZC34_9MAGN)

HSP 1 Score: 53.1 bits (126), Expect = 1.550e-6
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A A ++VLRVY  +G+Y+VAY +GI VLN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVALIYVLRVYYVQGFYIVAYGLGIYVLNLLIGFLSPKVDPELEALDGAS 95
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A2I4FCP1_JUGRE (protein RER1B-like n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4FCP1_JUGRE)

HSP 1 Score: 53.5 bits (127), Expect = 1.810e-6
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A A V+VLRVY+ +G+YV++Y VGI VLN  +  ++P++ P+ + L G S
Sbjct:  103 RWLGTLAVAMVYVLRVYSVKGFYVISYGVGIYVLNLLIGFLSPKIDPELQALDGAS 158
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI0010A348B1 (protein RER1B-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A348B1)

HSP 1 Score: 52.8 bits (125), Expect = 1.910e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL     AA++VLRVY  RG+Y+V+Y +GI +LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLVVAAIYVLRVYYVRGFYIVSYGLGIYILNLLIGFMSPKVDPELEVLDGAS 95
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BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: UPI000D631624 (protein RER1B-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D631624)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A AAV++LRVY  RG+Y+++Y +GI  LN  +  ++P+V P+ E L G S
Sbjct:   40 RWLGTLAVAAVYILRVYYLRGFYIISYGLGIYTLNLLIGFLSPKVDPELEGLDGAS 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Match: A0A124SDY2_CYNCS (Retrieval of early ER protein Rer1 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A124SDY2_CYNCS)

HSP 1 Score: 52.8 bits (125), Expect = 4.160e-6
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAERLRGLS 168
            RWL   A AAV++LRVY  RG+Y+++Y +GI  LN  +  ++P+V P+ E L G S
Sbjct:   53 RWLGTLAVAAVYILRVYYLRGFYIISYGLGIYTLNLLIGFLSPKVDPELEGLDGAS 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12109.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2Z7B3C3_9LAMI7.730e-846.43Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxI... [more]
A0A4D8YZI5_SALSN1.080e-742.62Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4... [more]
A0A830CVV9_9LAMI5.590e-746.43Protein RER1 n=1 Tax=Phtheirospermum japonicum Tax... [more]
A0A834WQD1_9FABA8.330e-750.00Protein RER1B-like n=1 Tax=Senna tora TaxID=362788... [more]
UPI001BF5899A1.110e-646.43protein RER1B-like n=2 Tax=Juglandaceae TaxID=1671... [more]
A0A834ZC34_9MAGN1.550e-648.21Protein RER1 n=1 Tax=Tetracentron sinense TaxID=13... [more]
A0A2I4FCP1_JUGRE1.810e-646.43protein RER1B-like n=1 Tax=Juglans regia TaxID=512... [more]
UPI0010A348B11.910e-646.43protein RER1B-like n=2 Tax=Prosopis alba TaxID=207... [more]
UPI000D6316242.090e-646.43protein RER1B-like n=1 Tax=Cynara cardunculus var.... [more]
A0A124SDY2_CYNCS4.160e-646.43Retrieval of early ER protein Rer1 n=1 Tax=Cynara ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12109contigEcto-sp13_S_contig12109:3527..5080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size249
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionRER1 family protein
Ec32 orthologEc-13_004060.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.9163637-CDS-Ecto-sp13_S_contig12109:3526..35841681462643.9163637-CDS-Ecto-sp13_S_contig12109:3526..3584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12109 3527..3584 -
1681462643.9263701-CDS-Ecto-sp13_S_contig12109:3887..39461681462643.9263701-CDS-Ecto-sp13_S_contig12109:3887..3946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12109 3888..3946 -
1681462643.9353127-CDS-Ecto-sp13_S_contig12109:4948..50801681462643.9353127-CDS-Ecto-sp13_S_contig12109:4948..5080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12109 4949..5080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12109.1794.1prot_Ecto-sp13_S_contig12109.1794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12109 3527..5080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12109.1794.1

>prot_Ecto-sp13_S_contig12109.1794.1 ID=prot_Ecto-sp13_S_contig12109.1794.1|Name=mRNA_Ecto-sp13_S_contig12109.1794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
RWLLFAASAAVFVLRVYTERGWYVVAYSVGILVLNNTVHLVTPQVGPDAE
RLRGLSERRRHRFSSNERLVYPRTSHTAVDGT*
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mRNA from alignment at Ecto-sp13_S_contig12109:3527..5080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12109.1794.1 ID=mRNA_Ecto-sp13_S_contig12109.1794.1|Name=mRNA_Ecto-sp13_S_contig12109.1794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12109:3527..5080- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGTTGCTGTTCGCGGCGTCGGCGGCGGTGTTTGTCTTGCGGGTCTA
CACCGAGAGGGGGTGGTACGTGGTGGCGTACTCCGTCGGTATCTTGGTCC
TGAACAACACCGTGCACCTCGTGACGCCCCAGGTACGTGTGTTTTGAACA
ACTCTGGTCTTGGGCAGCACTACATAACAATACTGGCCTTGATCAACACC
GTACAGTATGTATACGCCCCGCAGGAATGTGTGTCTTGAACAACACTAAT
GCTGGACAGCTGTTGACCTCGCAGACATGTGTGCCTTTAGCAACAATGTG
CATTTTGACCCCGCAGGTGTGCCTTGAGTCACAGCCGTCGTTAAAAACAT
TTGTGGTACCTGTATTCTGGAACAACACAGCTTTTTACTTCCAGGTAATC
TGTACGTCTTAAAAGGAAGGCTGGTCGTCGCACTCCGGGTATATCGTCAT
TGGCCATGATCCCAAAGCGTCCGCGCCTGCTGCGTCGAATCACTGGTGTT
GTTTTACGTACGCGAACTCTTCTTGCACTGTTGTTACTGCCCTTGCTCGA
ACCATTTGGTCCGTTCCCATCAAAACGAAGAGAATTGACGCGAAAGCTTC
CCGACGTTACGCGTGTTGCCACGAAAGTCGTCCACTGTGTGTTCCCCGCC
TTCCGCGACTTGTGCGTTTGAGAGGCCCGGCCGAAACCACTGCCGTCGCC
GTCGTCGCGCTTTACCCAACAGCATCGTCTTGTATTTCTCTGGCTCAATC
GCCGATTTTTTTGGCTGAACGAACTGTCCTCCTGGTTGACCAATGAAATC
GTGTTGCCCCTCAACGGGGCCAGGTCTACCAACGAAACCTTGACACCGCG
TGTTGGTATCACGTTTGTTTGCGAAGGTTTCTTTGTGCGTGGGCGGTGGG
CGACTTGCTCGGTTCGGTGTGTGAAGATTTATGGGGTGATGAACACACAA
GCCAGAAAACCGAGGTGTCCCCGAAAAATACCCCGCCCCCCCACAAGCGT
TTCGCCCGCAAGTAGTCTTATTGGGCGATTTTTCTGATGAGACCCGCCCG
CATATCGCTTTATTCAACGCTTTTTTCGCTATCGCTGCCACCGCCCGTCA
CCTGCTTGTCCTCGCCTCCCACAAAAAAACACAGGTTGGCCCCGACGCGG
AGAGACTACGGGGCCTTTCTGAACGGCGTCGGCATCGTTTCAGGTATAGA
CGTTGTCTCACCACAGAAGGTGCCACCACTTAAGAAATTGGCAGTTAGGA
ACCTGACCCTCAATAAGTCCAAAATCTGAGAACTTGCCGATAAGAGCAGG
TTCTCAGCCAAGGGGCCTACACTACAACCGATATTTGTTGCCGTGTGGGT
ATCCCAAAGACCAATATGTCACGGGTATAGGCGTTCTGTAATGGACGGTG
GCTTCGTCATTATTCCTACAAACATGCCGTTTCAGTCAAGAAGAGTCTCC
GACGCTACTGGTCTCACCCCATCCTGTGCTGCGTGCTGCGACGTAGCTCC
AACGAGCGCCTTGTCTACCCCCGTACAAGCCATACTGCTGTTGATGGAAC
ATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12109:3527..5080-

>mRNA_Ecto-sp13_S_contig12109.1794.1 ID=mRNA_Ecto-sp13_S_contig12109.1794.1|Name=mRNA_Ecto-sp13_S_contig12109.1794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12109:3527..5080- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGGTTGCTGTTCGCGGCGTCGGCGGCGGTGTTTGTCTTGCGGGTCTA
CACCGAGAGGGGGTGGTACGTGGTGGCGTACTCCGTCGGTATCTTGGTCC
TGAACAACACCGTGCACCTCGTGACGCCCCAGGTTGGCCCCGACGCGGAG
AGACTACGGGGCCTTTCTGAACGGCGTCGGCATCGTTTCAGCTCCAACGA
GCGCCTTGTCTACCCCCGTACAAGCCATACTGCTGTTGATGGAACATAA
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