mRNA_Ecto-sp13_S_contig69432.17940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69432.17940.1
Unique NamemRNA_Ecto-sp13_S_contig69432.17940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69432.17940.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.190e-25
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 2 
Query:   50 LPEGLATPPGTVQLLLLLAPLLPLAVRLVHLPLMLQLGMALRPLLRRAEPELNYQPSLEHLPLPRTTAVRRGGR 271
            LPEGLATPPG VQLLLLLAPL+PL VRL HLPL LQLGM   PLLRRAEP+L YQPSL  LPLPR TAVRRG R
Sbjct: 1122 LPEGLATPPGAVQLLLLLAPLVPLVVRLAHLPLTLQLGMVPPPLLRRAEPKLKYQPSLVRLPLPRPTAVRRGDR 1195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69432.17940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTD5_9PHAE9.190e-2581.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69432contigEcto-sp13_S_contig69432:48..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size275
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.5550385-CDS-Ecto-sp13_S_contig69432:48..2761681463953.5550385-CDS-Ecto-sp13_S_contig69432:48..276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69432 49..276 -
1681463953.5652936-CDS-Ecto-sp13_S_contig69432:560..6051681463953.5652936-CDS-Ecto-sp13_S_contig69432:560..605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69432 561..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69432.17940.1prot_Ecto-sp13_S_contig69432.17940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69432 49..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69432.17940.1

>prot_Ecto-sp13_S_contig69432.17940.1 ID=prot_Ecto-sp13_S_contig69432.17940.1|Name=mRNA_Ecto-sp13_S_contig69432.17940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
SDDDASAGAGGPGRNGIAGGSGNTAGNRSAPPPPRPALAPSGTTRASAAD
AAVRDGSSSSASSSRTGAELPAVSRASAAAEDYSGAAGGQE
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mRNA from alignment at Ecto-sp13_S_contig69432:48..605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69432.17940.1 ID=mRNA_Ecto-sp13_S_contig69432.17940.1|Name=mRNA_Ecto-sp13_S_contig69432.17940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69432:48..605- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACGATGACGCTTCCGCTGGAGCGGGAGGCCCCGGCCGGAATGTGAG
AGACGTATCGATGTATGCATACAATTCGCGAAAGCACATGCGGTGTGGAT
CCCACCATGAACGGCGCGTCAGATTCACGAGACACGCGCACGATGAACCG
CGCACGCGTGCTGCTGTTGCGAAAACATGACGAATGTACAGGTGAGCACT
CTCCGTAAAAAAATCTTGCTCCGCTGCTTTTGTTTTTTTCCCTTGGTTTG
GCTCAGCCAGTCTTGCCTTCTTTCCCCTGGGTGTGCTTGATTGACCCTTT
CTGCACCGTGCCATTTTGTGATTCGGCAGGGAATTGCCGGAGGGTCTGGC
AACACCGCCGGGAACCGTTCAGCTCCTCCTCCTCCTCGCCCCGCTCTTGC
CCCTAGCGGTACGACTCGTGCATCTGCCGCTGATGCTGCAGTTAGGGATG
GCTCTTCGTCCTCTGCTTCGTCGAGCAGAACCGGAGCTGAATTACCAGCC
GTCTCTAGAGCATCTGCCGCTGCCGAGGACTACAGCGGTGCGGCGGGGGG
GCAGGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69432:48..605-

>mRNA_Ecto-sp13_S_contig69432.17940.1 ID=mRNA_Ecto-sp13_S_contig69432.17940.1|Name=mRNA_Ecto-sp13_S_contig69432.17940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69432:48..605- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGACGATGACGCTTCCGCTGGAGCGGGAGGCCCCGGCCGGAATGGAAT
TGCCGGAGGGTCTGGCAACACCGCCGGGAACCGTTCAGCTCCTCCTCCTC
CTCGCCCCGCTCTTGCCCCTAGCGGTACGACTCGTGCATCTGCCGCTGAT
GCTGCAGTTAGGGATGGCTCTTCGTCCTCTGCTTCGTCGAGCAGAACCGG
AGCTGAATTACCAGCCGTCTCTAGAGCATCTGCCGCTGCCGAGGACTACA
GCGGTGCGGCGGGGGGGCAGGAG
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