mRNA_Ecto-sp13_S_contig694.17937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig694.17937.1
Unique NamemRNA_Ecto-sp13_S_contig694.17937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig694.17937.1 vs. uniprot
Match: A0A6H5J9P0_9PHAE (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P0_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 1.860e-100
Identity = 206/227 (90.75%), Postives = 208/227 (91.63%), Query Frame = 2 
Query:   47 MSFASVLFGPCTRPLATRTCCVARGASASSSRPLANGRREERRSPRARASGPAKQGPGAVQCRRWYHRWSPPGATDTNSRSGTLLNMAVEKEXXXXXXXXXXXXXXXXXXXXXPPKSPQAVAMEEFADLERKLASPREXXXXXXXXXXXXXXXXXXXXXXXXXQQASAGAAQPDRQSSRVRNTLTRPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP 727
            MSFA V FGPC RPLA RTCCVAR ASASSS PLA+GRREERRSPRARASGPAKQGPGAVQCRR YHRWSPPGATDTNS SGTLLNMAVEK XXXXXXXXXXXXXXXX       K PQAVAMEEFADLERKLASPRE XXXXXXXXXXXXXXXXXXXXXXXXQQASAGAAQPD QSSRVRNTLT+PEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP
Sbjct:    1 MSFARVSFGPCKRPLAARTCCVARRASASSSCPLADGRREERRSPRARASGPAKQGPGAVQCRRRYHRWSPPGATDTNSGSGTLLNMAVEKXXXXXXXXXXXXXXXXXTKPPPLLKVPQAVAMEEFADLERKLASPREAXXXXXXXXXXXXXXXXXXXXXXXXQQASAGAAQPDGQSSRVRNTLTKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP 227
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BLAST of mRNA_Ecto-sp13_S_contig694.17937.1 vs. uniprot
Match: D7FV34_ECTSI (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV34_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 1.310e-86
Identity = 186/227 (81.94%), Postives = 190/227 (83.70%), Query Frame = 2 
Query:   47 MSFASVLFGPCTRPLATRTCCVARGASASSSRPLANGRREERRSPRARASGPAKQGPGAVQCRRWYHRWSPPGATDTNSRSGTLLNMAVEKEXXXXXXXXXXXXXXXXXXXXXPPKSPQAVAMEEFADLERKLASPREXXXXXXXXXXXXXXXXXXXXXXXXXQQASAGAAQPDRQSSRVRNTLTRPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP 727
            MSFASVLFGPC R LATRTCCVAR ASASS  PLA+GRREE RS RARASGPA+QG GAVQCRR YH WSPPGATDTNS             XXXXXXXXXXXXXXX      PPKSPQAVAMEEFADLERKLASPRE    XXXXXXXXXXXXXXXXXXXXXQQASAG AQP  QSSR+RNTLT+PEEPEAEECCGNGCATCVWIGYWEELQAWEEA REREEAPP
Sbjct:    1 MSFASVLFGPCKRHLATRTCCVARRASASSLCPLADGRREEPRSSRARASGPAEQGLGAVQCRRRYHHWSPPGATDTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTKPALPPKSPQAVAMEEFADLERKLASPREAPRRXXXXXXXXXXXXXXXXXXXXXQQASAGGAQPVGQSSRLRNTLTKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAGREREEAPP 227
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BLAST of mRNA_Ecto-sp13_S_contig694.17937.1 vs. uniprot
Match: A0A1H6CGB9_9GAMM (Oxidoreductase-like protein, N-terminal n=4 Tax=Marinobacterium TaxID=48075 RepID=A0A1H6CGB9_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 7.570e-6
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 2 
Query:  593 TLTRPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP*SAAG 742
            TL +P  P   ECC + C+ CVW  Y+EE+ AW +AE ER+ A   +AAG
Sbjct:    6 TLEKPTPPMDGECCESECSPCVWDTYYEEMNAWRQAEAERKAAE--AAAG 53
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BLAST of mRNA_Ecto-sp13_S_contig694.17937.1 vs. uniprot
Match: A0A0U9HL91_KLENI (Oxidoreductase-like domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HL91_KLENI)

HSP 1 Score: 53.1 bits (126), Expect = 3.460e-5
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 2 
Query:  596 LTRPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEA 721
            L  PE+P  E+CCG GCA CVW  Y+EEL+A+E  +    EA
Sbjct:   14 LEEPEKPYPEDCCGGGCAPCVWDTYYEELEAFEMKKEALLEA 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig694.17937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J9P0_9PHAE1.860e-10090.75Oxidoreductase-like domain-containing protein n=1 ... [more]
D7FV34_ECTSI1.310e-8681.94Oxidoreductase-like domain-containing protein n=1 ... [more]
A0A1H6CGB9_9GAMM7.570e-648.00Oxidoreductase-like protein, N-terminal n=4 Tax=Ma... [more]
A0A0U9HL91_KLENI3.460e-552.38Oxidoreductase-like domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig694contigEcto-sp13_S_contig694:13540..16675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1464
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionOxidoreductase-like, N-terminal
Ec32 orthologEc-12_005000.1
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.3323493-UTR-Ecto-sp13_S_contig694:13539..142731681463953.3323493-UTR-Ecto-sp13_S_contig694:13539..14273Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig694 13540..14273 -
1681463953.3897135-UTR-Ecto-sp13_S_contig694:16629..166751681463953.3897135-UTR-Ecto-sp13_S_contig694:16629..16675Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig694 16630..16675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463953.3540509-CDS-Ecto-sp13_S_contig694:14273..143311681463953.3540509-CDS-Ecto-sp13_S_contig694:14273..14331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig694 14274..14331 -
1681463953.3668885-CDS-Ecto-sp13_S_contig694:15527..155891681463953.3668885-CDS-Ecto-sp13_S_contig694:15527..15589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig694 15528..15589 -
1681463953.376978-CDS-Ecto-sp13_S_contig694:16065..166291681463953.376978-CDS-Ecto-sp13_S_contig694:16065..16629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig694 16066..16629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig694.17937.1prot_Ecto-sp13_S_contig694.17937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig694 14274..16629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig694.17937.1

>prot_Ecto-sp13_S_contig694.17937.1 ID=prot_Ecto-sp13_S_contig694.17937.1|Name=mRNA_Ecto-sp13_S_contig694.17937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MSFASVLFGPCTRPLATRTCCVARGASASSSRPLANGRREERRSPRARAS
GPAKQGPGAVQCRRWYHRWSPPGATDTNSRSGTLLNMAVEKEQQQQQRHL
QQPQQQGQTKPAPPPKSPQAVAMEEFADLERKLASPREAPRRKTPDQVMM
EEFAALERKLDSTQQASAGAAQPDRQSSRVRNTLTRPEEPEAEECCGNGC
ATCVWIGYWEELQAWEEAEREREEAPP*
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mRNA from alignment at Ecto-sp13_S_contig694:13540..16675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig694.17937.1 ID=mRNA_Ecto-sp13_S_contig694.17937.1|Name=mRNA_Ecto-sp13_S_contig694.17937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig694:13540..16675- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCAGCGAACATACTCTCTTAAGCCGAAAGGAAGGTACGTCTTGGATGT
CCTTCGCCAGCGTTTTATTTGGGCCGTGTACGCGGCCCCTTGCTACTAGA
ACCTGCTGCGTGGCACGTGGTGCGTCGGCTTCTTCTTCACGTCCTCTGGC
CAACGGGAGAAGGGAAGAACGGCGATCACCTCGCGCAAGAGCGAGCGGTC
CAGCAAAGCAGGGTCCGGGAGCGGTACAGTGCAGGAGATGGTATCACCGT
TGGTCACCTCCCGGGGCGACCGACACCAACAGCCGCAGCGGCACGTTACT
GAACATGGCAGTCGAAAAGGAACAGCAACAGCAACAACGACACCTACAAC
AACCACAGCAGCAGGGGCAGACGAAACCAGCCCCCCCACCGAAGTCTCCT
CAGGCAGTGGCAATGGAGGAGTTCGCTGATTTGGAGCGCAAGCTCGCCTC
GCCGCGGGAGGCACCGAGGAGAAAGACCCCGGATCAAGTCATGATGGAGG
AATTCGCAGCTCTTGAGCGGAAGCTTGACTCAACACAACAAGCGAGTGCC
GGTGCTGCTCAACCCGACAGGCAATCGAGTCGTGTGAGAAATACCTTGAC
GAGACCGGAGGTAAAAGTGGACTGAGCGCACGCGCACAGAGGTGCCTTCT
ACGGTGGGGTGCCAGTTTTTGGTGAAGTCATCCAAAGTGGCTGCCCGTCC
TCCGAAAACTCTCGGCGAAATATCAATTCGACAACAATGCTTAAAAGGAC
ACCGTCGCATTGCGTACGACAACGACTCCCGCTGTAGCCTATCCTCTCTC
TGTCCACTTGGCCACTGGTGATTTGTCTCTGTGGTTTTGCTCCCGCTCGT
CGAGAGTTTGATGTGTTGCGACTGGGAGCTTTTTCTACTTCGAAGTTCAT
ACAGGAGTAGCTGGTGTGAGCGGGCATCAAACCGGAAAGTTCAGCAATGT
CTGTTTGCTTCCCTGGTACTACGTCTTCCATTCATGATCAGAGCGGCGTA
CGACAACACACAAAAGTTGACCACTATTCTGACCTCATCTTGACTGTTTT
CGGCTGGTAACTTCCCTCGTCATCAATCATCACCAGGAACCTGAAGCGGA
AGAGTGTTGCGGGAACGGGTGCGCGACGTGCGTCTGGATTGGATACTGGT
GAGACTGCTCTGGGTTTCTCCAGACTTGTGTGTGTGTCTGTGTTTTTATG
ATTAGCATCGACCGCCCGGCTGACCAATGAAAATACGTCAGTCTTAGTGC
GGTTGAAGACACAAAACACTTTCATCTGCCATGAACTGGGACCCCGTGAG
GGGGCAGCATGGGGGAGGCTAAAGTTTCCTTCGGATCAAAGACAGTGTGT
GTGTATGTGTGTGTGTGTTTTTGTTCATAAACACAAGGATTTTTGTTATG
CCGGGCGCCGTTAGTCCATGAGCGATCAGCGTTCGCTGCACGAGGCCGCT
CGTGGGGCTAGAGCTCCGATTCTTAAACCGCGAAAGCAGTTCAGCCCGTT
CTTGAACGTTTTCACAGCAAACAAGGAATGACCCATTAAACTTAAGCTGA
CTCTATTCTGTACACCGTGACGGGTTAAACTCTCTGCGTTGTTCGGTATG
AGCATGTGTCCGCCCATGCTTTTCGTGGCACGCACACGGCACACACACAC
GAGTGAACATGAGACACACGGAGAATGGTATACATCGGCACCGTCAGCGG
TGGCAGCGAGGTTTAGTCTCAGACACTTACCAGCGAACAACGCAAGGCCC
GTCTCTTCGCGAACTCGTGCAGCGAATGGAAGAAACGGTTCAAGAATTTC
CGTGGTTTAAGTTCTTGGAGACTCTTACTGCAAGACTGTCACACACATGG
AAACCATGCTTCTCGCGTGCACGAATGAGATTGTGCCATTTCGTGCTGGC
TCGAGGTGAATGTAGTGATCATGTGTTCGAAGCCGTTGTACCTTCATGTG
TATAATGGTCCGCCGGGAGATCATGTTTGAACACTGGGCGGAGAGGACGG
GGCACGCGAGCGCCCCGGTCGCGCGCAGCCCCTGGAAATTTGGACCATCT
GCTTCAGGGATTCCGCAAGTACTGATTTGTTCAGAAGGCGTATGTATCTA
GTGAGGGTGCTCAGAAGTACAAGAATCCACTCACACGCAATCGTCGAAAG
TCGTGCTGTCCAACGCGTTGCAAATGGTCCCGAAAGTAGGTTGCGTGCGT
GTTGCAACAGCAACGCGATTAGAATCAACGACGAGGAGAAATTTTACTAG
ATATTCGTTTTTCAGCGCCTTCGCACGAAACTCAGGATCTCGACTCACCA
AATAAACTCGTTGCTCTCCCGGTTTTGGGAACCTACTGAACCAGGGAGGA
GCTACAGGCGTGGGAAGAAGCGGAACGCGAGCGCGAGGAAGCGCCGCCCT
GAAGTGCGGCGGGAAGTTTTTTTCTTTTTTCGTTCACATTGCGGAGGGTT
TCCATCTGTATTTACCGGACGAGAAAGCCGGCTGAGGTTGTCGAATCTCT
CAACCATGTAGACGTCGGGGGCAAGGCTAACTGGGAGTACCTATTGGCTG
CTGCGCCAGCGACGAGCTTTGCACAAACACTCAGTGTTGTGTGGTGTAGA
TTGATGGTACAGATGTATGCGTGTATATCCAGCCCATGACAGGCGCTGCC
ACGTCGTGCAGTTGGTTGTAAGTATTGTACAAGTTTATGGAGGCGTCAAA
AGATTTTGTTGCAGTTTCAAGCCGAGAAGAAACTCGAACGTGCTGTACGA
GTCTCCTCTACCTGACCGGTGGGGTCTAAGCACATCTGTGATTTTTTGGG
CATTGAAACGTGCGAAGCCATCCGTTCGCCGAGGTTATCATTCCGCCACG
TATTGCATGCAGCACAGAATAGCGTATTGTAGAACGGAAGGGCTCGAGAC
GTACCGGCGAATTTTCTTGTGCGCTACCCAGGACACCAAACACCAGCCCC
ACCCTTATTAAGGAGTGTATCAACGTTAAGAATGCCACGCGGATCGATTG
TCAGACAGAGTCGGGTCGACGGCGGAAAGTTGCCAAGATTTATTGACACA
AAACAACGGCGAGGTTTTCGCTGCTCGAACCAGGGACTGGTTTTGGTGTG
AAACGAAACTTCCACAAGGTTAGTTTTTGGAACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig694:13540..16675-

>mRNA_Ecto-sp13_S_contig694.17937.1 ID=mRNA_Ecto-sp13_S_contig694.17937.1|Name=mRNA_Ecto-sp13_S_contig694.17937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig694:13540..16675- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTTCGCCAGCGTTTTATTTGGGCCGTGTACGCGGCCCCTTGCTAC
TAGAACCTGCTGCGTGGCACGTGGTGCGTCGGCTTCTTCTTCACGTCCTC
TGGCCAACGGGAGAAGGGAAGAACGGCGATCACCTCGCGCAAGAGCGAGC
GGTCCAGCAAAGCAGGGTCCGGGAGCGGTACAGTGCAGGAGATGGTATCA
CCGTTGGTCACCTCCCGGGGCGACCGACACCAACAGCCGCAGCGGCACGT
TACTGAACATGGCAGTCGAAAAGGAACAGCAACAGCAACAACGACACCTA
CAACAACCACAGCAGCAGGGGCAGACGAAACCAGCCCCCCCACCGAAGTC
TCCTCAGGCAGTGGCAATGGAGGAGTTCGCTGATTTGGAGCGCAAGCTCG
CCTCGCCGCGGGAGGCACCGAGGAGAAAGACCCCGGATCAAGTCATGATG
GAGGAATTCGCAGCTCTTGAGCGGAAGCTTGACTCAACACAACAAGCGAG
TGCCGGTGCTGCTCAACCCGACAGGCAATCGAGTCGTGTGAGAAATACCT
TGACGAGACCGGAGGAACCTGAAGCGGAAGAGTGTTGCGGGAACGGGTGC
GCGACGTGCGTCTGGATTGGATACTGGGAGGAGCTACAGGCGTGGGAAGA
AGCGGAACGCGAGCGCGAGGAAGCGCCGCCCTGA
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