mRNA_Ecto-sp13_S_contig6939.17934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Match: D7FMT1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMT1_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 7.340e-143 Identity = 205/218 (94.04%), Postives = 210/218 (96.33%), Query Frame = 2
Query: 2 QALAGWFVMWAALVSIPPGHSEQKNVIRMNMVHGAVATSLAVVTILTGCDSTFSTAASVAFFAVDALVMISNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQEVVCQPSCPAPNLYTYAQTNEFSTLFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLITKKVAASIMCGRKP--AKVA 649
QALAGWFV+W ALVSIPPGH+EQKNVI MNM HGAVATSLAVVTILTGCDSTFSTA+SVAFFAVDALVMISNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQ+VVCQPSCPAPNLYTYAQTNEFST FYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLI KKVAAS+ CGRKP AKVA
Sbjct: 18 QALAGWFVLWTALVSIPPGHTEQKNVIMMNMAHGAVATSLAVVTILTGCDSTFSTASSVAFFAVDALVMISNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQQVVCQPSCPAPNLYTYAQTNEFSTPFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLIMKKVAASLTCGRKPKAAKVA 235
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Match: K3WYK4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYK4_GLOUD) HSP 1 Score: 139 bits (350), Expect = 2.710e-37 Identity = 86/214 (40.19%), Postives = 127/214 (59.35%), Query Frame = 2
Query: 8 LAGWFVMWAALVSI-PPGHSEQKNVIRMNMVHGAVATSLAVVTILTGCDSTFSTAASVAFFAVDALVMI-SNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQEV-VCQPSCPAPNLYTYAQTNEFSTLFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLITKKVAASIMCGRKPA 640
+A W V+W ++ + P G S++ ++I +N HG V T AV+TI G DST + A S+++F VD M+ S+G R + +R MDY HH++G ++G F+ F QE VC P Y + QTNE ST FY +RLT + +AG LF L FFGSRIVFN +L+P + HC + ++ P+ LQ +W +I KK+A ++ +KPA
Sbjct: 15 VAAWSVLWIVILQVVPAGASKRNHIISLNAAHGVVCTLTAVLTIQGGYDSTNAVAVSLSYFLVDLAAMVQSDGLRNLPTLNR----SRKMDYVHHVLGLLWG-FVFFVQEATVCDAHMGNP--YVWIQTNEVSTPFYNWFRLTDNKLAGALFVLTFFGSRIVFNTAFLIPQTLRHCD-ARYLVACIPFFALQYMWFVMIVKKMARTL---KKPA 217
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Match: A0A8K1CPR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPR7_PYTOL) HSP 1 Score: 125 bits (313), Expect = 6.610e-32 Identity = 77/203 (37.93%), Postives = 113/203 (55.67%), Query Frame = 2
Query: 17 WFVMWAALVS-IPPGHSEQKNVIRMNMVHGAVATSLAVVTILTGCDSTFSTAASVAFFAVDALVMI-SNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQEVVCQPSCPAPNLYTYAQTNEFSTLFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLITKKVAASI 619
W V+W AL+ IP G S + +++ +N HG V T +A +TI D+ S A S+A+F VD + M+ ++G + + +R MDY HH IG +GT + VC + P Y + QTNE ST FY +RLT H +AG LFAL FF SRIVFN Y +P + C + ++ P+ LQ VW +I +K+ ++
Sbjct: 21 WMVLWTALLLVIPAGASGRNHIVSLNAAHGVVCTVVAALTIQYHLDTANSVAISLAYFLVDLVAMVKADGVTKLHTLHR----SRLMDYVHHFIGLFWGTIFYAHEATVCDAALGNP--YVWIQTNEVSTPFYNWFRLTNHVVAGALFALFFFLSRIVFNTFYFIPRLLAECD-TRYLWGCLPFFALQYVWFVMILQKMRRTL 216
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Match: A0A484EDY1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY1_BRELC) HSP 1 Score: 122 bits (305), Expect = 1.280e-30 Identity = 71/204 (34.80%), Postives = 115/204 (56.37%), Query Frame = 2
Query: 5 ALAGWFVMWAALVSIPP----GHSEQKNVIRMNMVHGAVATSLAVVTILTGCDSTFSTAASVAFFAVDALVMISNGRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQEVVCQPSCPAPNLYTYAQTNEFSTLFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLITKK 604
A A V+W ++ + G ++ ++I +N HG ++T + +T+ G D+T S A S+++F VD VM+ + + L + +R MDY HH++G +G L + VC S N Y + QTNE ST FY +RLT +AG +FA++FF SRIVFN +Y++P + C ++ +PY +LQ VW ++I +K
Sbjct: 20 AAASGVVLWTFILYVVSTGFLGRNKTSHIITLNATHGVLSTLASTITLYFGLDTTLSVAISLSYFLVDLFVMVHSDGPRNILSLR---QSRLMDYGHHILGLYWGIVLFKNEATVCDASFG--NAYVWMQTNEVSTGFYNWFRLTDSRVAGAMFAISFFFSRIVFNTVYIIPRVATQCQ-PLYILGCSPYFVLQYVWFYMIARK 217
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Match: A0A7S2UV91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV91_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.570e-24 Identity = 58/129 (44.96%), Postives = 75/129 (58.14%), Query Frame = 2
Query: 218 GRRQKRLGEKLDSPARAMDYAHHLIGAVYGTFLLFGQEVVCQPSCPAPNLYTYAQTNEFSTLFYGLYRLTRHPIAGGLFALAFFGSRIVFNFMYLVPYSWSHCTFSGFMAIAAPYQLLQVVWMFLITKK 604
G KR G++ ++ + MDY HH++G ++G L F C S N Y QTNE ST FY YRLT + +AG LF LAFF SRIVFN +YL+P + C S + I+ PYQLLQ W + I K
Sbjct: 36 GGTHKRKGKRSNT-SHIMDYVHHVLGVLWGVSLTFQMPYWCD-SPRVFNAYVLIQTNEISTPFYAWYRLTNNQLAGMLFTLAFFLSRIVFNSVYLIPLFFRECPASSVVIISGPYQLLQYTWFYFILLK 162 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6939.17934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6939.17934.1 >prot_Ecto-sp13_S_contig6939.17934.1 ID=prot_Ecto-sp13_S_contig6939.17934.1|Name=mRNA_Ecto-sp13_S_contig6939.17934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp AGACRLVRDVGSAGQHSTGALRAKECHQDEHGARRGSDELGGGDYPDGVRback to top mRNA from alignment at Ecto-sp13_S_contig6939:808..5001+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6939.17934.1 ID=mRNA_Ecto-sp13_S_contig6939.17934.1|Name=mRNA_Ecto-sp13_S_contig6939.17934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6939:808..5001+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6939:808..5001+ >mRNA_Ecto-sp13_S_contig6939.17934.1 ID=mRNA_Ecto-sp13_S_contig6939.17934.1|Name=mRNA_Ecto-sp13_S_contig6939.17934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6939:808..5001+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |