mRNA_Ecto-sp13_S_contig6937.17930.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6937.17930.1
Unique NamemRNA_Ecto-sp13_S_contig6937.17930.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6937.17930.1 vs. uniprot
Match: D7FXK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK1_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.910e-65
Identity = 120/124 (96.77%), Postives = 120/124 (96.77%), Query Frame = 2 
Query:    2 GGCMRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGAILTGELQYKPSLRDETAVPPSPADKGEAEPATNTAVEGAVPLEATSDAASAVASETCPEKTTAVTKSPSKQ 373
            GGCMRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGAILTGELQYKPSLRDETAVP  PADKGEAEPAT TAVEGAVPLEATSDAAS VASETCPEKTTAVTKSPSKQ
Sbjct:  118 GGCMRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGAILTGELQYKPSLRDETAVPAPPADKGEAEPATKTAVEGAVPLEATSDAASTVASETCPEKTTAVTKSPSKQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6937.17930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXK1_ECTSI1.910e-6596.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6937contigEcto-sp13_S_contig6937:669..5372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2889
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002010.1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.7858202-UTR-Ecto-sp13_S_contig6937:668..6781681463952.7858202-UTR-Ecto-sp13_S_contig6937:668..678Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6937 669..678 +
1681463952.8428943-UTR-Ecto-sp13_S_contig6937:2859..53721681463952.8428943-UTR-Ecto-sp13_S_contig6937:2859..5372Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6937 2860..5372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.7979555-CDS-Ecto-sp13_S_contig6937:678..7921681463952.7979555-CDS-Ecto-sp13_S_contig6937:678..792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6937 679..792 +
1681463952.8087845-CDS-Ecto-sp13_S_contig6937:2282..24291681463952.8087845-CDS-Ecto-sp13_S_contig6937:2282..2429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6937 2283..2429 +
1681463952.8266232-CDS-Ecto-sp13_S_contig6937:2754..28591681463952.8266232-CDS-Ecto-sp13_S_contig6937:2754..2859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6937 2755..2859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6937.17930.1prot_Ecto-sp13_S_contig6937.17930.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6937 679..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6937.17930.1

>prot_Ecto-sp13_S_contig6937.17930.1 ID=prot_Ecto-sp13_S_contig6937.17930.1|Name=mRNA_Ecto-sp13_S_contig6937.17930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGA
ILTGELQYKPSLRDETAVPPSPADKGEAEPATNTAVEGAVPLEATSDAAS
AVASETCPEKTTAVTKSPSKQ*
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mRNA from alignment at Ecto-sp13_S_contig6937:669..5372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6937.17930.1 ID=mRNA_Ecto-sp13_S_contig6937.17930.1|Name=mRNA_Ecto-sp13_S_contig6937.17930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4704bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6937:669..5372+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGATGCATGCGAGGAACGGTTGTGTGCGAAGAGGCGGACGTGGCGG
GATCTTTCGAGGGTGTGGAGATGACCATCCACCACCGTCTGACGCTCAGC
GGCACCGCCAGGGTCGGGGGCAAGGTAAGAAGAAGAATCATCGACGTTGG
GTCGGGACCGCGCCGTGCGTCCATCTGCCATCCGTCAGCTCGTGGCGTTT
GTCAGAGGTCCCTGTTTGAGGCCGCTGAGGAGCGCTGATTTGATGTATAG
AAAAAAAAGAAATGGGCCAAGGAAAACACAGCTGTTCCAGGCCTTTGGAT
CGGGCACCCCGGCACTATTCAGAGCATGAGACATCTTGAATTTCATCTGG
GTGCCAGGCAATTTTCACCGGCCCTAAACAGGGCGACCTACCTAAATAAT
TCGGCCTTAAACAGCTCCCTTGGAGACAGGTGTAGCCAGCCTGCTTCTCA
CTGTCTCGCGCGGTACCCTAGGACCTCGGGTTTGGAATCCTAGGGTGCCC
TTGTACTACCACCACCACCACCACCACCACACCCTGCATTATTTCCTCCA
CAGGACACACGCCCAACCTGTGCGGTAGAGACGGGACTCAAATGAGAACT
TGGGGGCATGCAACATGTGCACGTGCATGTGCATGTGCATGTTTGCGATT
TTCTGTTTGTGTGAAAGGAATGTGTTTTAAGTGGAATCGGCTGCTTAGGT
ACGAATCGGGTACCGCCACGGGAGGGGAGACGCGGAAAGGATAGAAGAAC
AATCGCGACGAGTCCCGTTTGTGTGTGTCAAGGTTTCTCGTCCTTCATAT
TTTTGAAAACATTCGGCGGACGACCTAGCGTGTGTAGCTTGACGCATTCA
TTTCTTCAGCTTCAACTACTACGGCTGCTGCTACTACTGCATATCAGACG
CTCGGGCGTTTTTTTTTTGTGTATTGGGGGTGCTGTAGGCAGATTGGTTG
GTCGCAAGGACGGTGGCGCGAGCGCGCGTGCGGGCGGCCTGGATTGTCTT
TTTTTGTTAGTTTCTTCTGTGTCCAACGCACACGCGTCGGATCAATCTTG
ACCGTTTGCCGTGGAACGGACGGCGACCGCTGAGCTCGCGACTATAGGGA
TTGCTGTACCCCGCCTTGTAGCGTCAACATCACCGTTCAACAATATGGGT
GCATGACCGTCTGCCCACCCCATCCATGGCAGTAGATACCCGTAGTAGCG
AACCAAATGTTGTCGGTTTACGCCAGCAGCGCGGTGCTATTCTTGAGTGG
ATCACCGTTGCTTGCATCTACGAAGAACGTTTGACGAGACGACGATCTCC
GTGTCCACCTACCGCCCTACGTCGCCGCAGAAGCCTGCGACCCGAAAGCG
ATTATGTTTCCGCACGAAACCATCCGAAGAGGCATTATTTAGTGTCGGTC
TAATCAGTCAAGGAAGGAAAGAGCGGACGGTGCACTCCCGCCTGTCTATG
GGCAACAATACAGCAGGCCTTCCCCATGCATCTTCAACCTTTACAGACAA
GGGACGCCCGGACACGACTTTTGCGCTTGCTCCTCCCAAATGTACCCGCA
ATTTCTTCTCCGAGAACGCTCTTTTTGTCCCGTCCTCAACCCTGGTGTTT
GCCATCTCACGCAGACAACATACCACCGGCTGTCCGTGCACGACGGGGCG
ATCCTGACGGGAGAGCTGCAGTACAAGCCTTCCCTGCGAGACGAGACTGC
CGTGCCTCCGTCACCGGCCGACAAGGGCGAAGCAGAGCCAGCAACAAACA
CCGCCGTCGAGGTGAGCGCTTGATGGTATGCATACCGTCATTTTTTCCCG
TCTCCGGCTGCGGTTCGTGTGTGCGACCGCTCTCGTTGTTCTCGAACCGT
TCCGATCCTCATCTACTGCTTTCGGCCTCAACGGTATCCGGTAGTGTTTA
GGACGACTGGCTTTCCATGTTTGGATCGCGCACGCACCAGAGGTAAATTG
CCTACATGCCACGAGGGCACCCAAGCGGCGTGACCTTGAAGGAGGACGAG
AGGCTCAGTTTTGCCACAAATGAACGTGTCCTTCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTATTGTGCGCGCGTGTGCTTCGCAGGGCGCGGTGCCTCT
TGAGGCGACGAGCGATGCCGCATCGGCGGTGGCAAGCGAGACGTGCCCTG
AGAAGACAACAGCCGTGACCAAGAGTCCTTCGAAACAGTGACAAGGTTTC
GAGACTGCGGGCATGCATTCACGCGCGAACACCGCGGGAAGGAGCTCCAG
CCCCATTTCATCCTCCAGCCCAAGAGTGCCAGGATTGTGGGATGGGGGGG
AGCGTGAGGAGGCCATTTAACTCAGGCCGGCAGAGGGTATCTTCGTCTCC
TGCGTGCGAAAAACAGAATTCCCTTTTCGAGGATATGGTAGATGCTGACG
ACAGGGGGAGGGTGGGGGCAGGCGGTATCGCTACGATTGCGCACGCGCCG
AGAGGGTGAAAGCAGCTACACTTTTATCCCGGTACCTGCGGTGCATGGGG
GCGTGTGTAAGGGACTCTGGGCTATGCATGGCGACGAGCTCTGTGGCTCA
TGTTTGCGTTTTTGGTTTCTCCCCCTCTCACCGAATAGCGGGTTATATTT
TGTGTCTTGAGCATGACATTGTGTATTACGTGACAGGTTGTGGGGTTGGG
GGGGGGTTGTGATTGTTGTAGGAAGAAACCGGGGTGTTGGTGATGTTGTG
GATACTTGATTAACACAGCTGTTTTTGTAGTATTCGTCAGGATGGGACGG
TGGAGGTTAGCTAGTGGAAGGGCGTAGGTTTTGGAGCCGTAGGCTCAAGG
GTATGAATACTCGCAGGTAGACGTTGCAACACCCGGGCACAGCTGCGAGA
GAGCATCCATCGTCTTGTCCACGTAGTGGTCAGTAGTGGGCGGGACGGGA
TTGGGAGGAACGTATTTTCCCATTTGGAAGAACACAAGTGATGAGTTTTT
TTTTTAAGTGTTGTTTTTCCAACAGGGCGTCCTGCAAAACTATTAATTAC
TTTCGGCAACACCTTTTCCCGCCATGTCATTTATGATTGATGTGTTGTTG
TGGTTTCCCTTGTTTTTAGGCCTCTCGCGAAACTCCCGACTCGCCGTGTT
CATACCTGCAGTAGTACCACACCTGGCACCTGGTGTTTTTGTCTTTTCTG
TTCTTCAGCAAGTCTCGTCCTTTGGCACTTGACTGGATTGGCAACGAGAG
AAGTTAGCGGGGAGGTTTTTGGCATGTTTTGGAGGCAGATACCGCGGTCG
GTGTAGCGTATAAATCGTGTGCGTACTGAAGTGGACATGACTACATATCT
GTTTCGTTGTTTTCTTTCCCTTCCGGGGTGGTGTCTTTGCTTCACAAAAA
ACCCAGTGTTGCAGCCGGGCACGGGTTAGGGGGGGGGGAGGAGGAAACCG
CGCGGCTGGGCCGCTGTTGATTTCCGCCGCGGCTGTAAAAAGATGGTGTA
TGTGTTGGTTGACGGGAGGGGGTCTGTTGGTTGTTGCAACCGTTCGCTGC
GATATTGATGGGGTGATAAAGGGGCACAATATTTGATTGATTGGTGGCCA
GCAGAATCATGCGTGAACACCAAAGGGCACGCAGATTCTGAACCCAGCAT
GCACAATGACGGTGGCGGTTGCGGCGTGCTCCCTTTTCGTGGGGTTTTTT
GTGGCTATGCTTTTGAGGGATCGCTTATTTGTTGCGGGATTGCGTGCCGA
TGCTGCTGCGTGCGCCCTTTGCTACCCACGGCGGGCGCGGACGCGAGATC
AGGGTCGTCCGGCAGCTAGTTCTAACGTTGGTGGTCGAGGTGGCGACTGC
GTATGGTCGTAGCTTAGCCCAGCGCGGTGTGTGTCGGAGAGTCAAGTCGC
AATGTTGAGCGAGGCCGGCCTCTTGGGGCTGGACTTCGCTTGGGCTGTTA
ATTTTTTTTTTGTGTGGAGCGTTTTAGGGCTGGTGACACGCACACGCACG
TTTGCCTCAACATCCTTATGTAGCCGTCCGAGTGTATCCTGAGTAGAACA
CTGTGTGGGACCCGTGGTAATGCCTTCGAGGCGCTTGAAAGGCGTTGTTG
ATTGCGATAGAATGCCGCCTCGTTTGCATACTACCGTGAATTCCACATGC
CATGAATAATTTTTTGTCCGATCAGTAGTCTACCGCCTTTGGTATTTGGG
GTTGATTTTTGCACAACAATTTATTTAATGTAGACCAATAATTGCACGAG
ACGAATGCACCGTTGTCTACACGGCTTGCAAGTTGACAAAGTACGGATCG
CACGACTTTGCCGCTGGTCCAACCGGAGAGCGATCCACGGGGCGGCGGGG
GTGGGCAGAAAGTTTCCGGGTGTCCAGGCTGAGGCACTCTGTCGTTGCGG
TTATTTTAGTGGTGGATGCCGGTGCCGCCCGTGGCTTTGTGGTGCGAGGT
GATGAGGTGAAGCGGCCAGTTCGATATTGGTACCGTGTGCAGGCACTTTC
CCGTGAGTCTCGCACCGGAGAAGCTGTGTCTGCAGGTAGTGCATGGAAGC
ACGTTGTAAGACATCCGTTGATGATGCCCAGAGCTGAACTCGAATTCTTT
GCGACAAAAAAACTGCTGCTGGGGGGGGTAACCTTGGAAGGCTGTCTGGT
ACAACGGGGCGCTGGATCTGGCGAGCAGAAGTCCAGACTGCTTTCACTCA
AGGCGCAGACATACAGAAATGCCTCCCCATCCTTTGTAGGAACACGTCGT
CTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6937:669..5372+

>mRNA_Ecto-sp13_S_contig6937.17930.1 ID=mRNA_Ecto-sp13_S_contig6937.17930.1|Name=mRNA_Ecto-sp13_S_contig6937.17930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6937:669..5372+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGAACGGTTGTGTGCGAAGAGGCGGACGTGGCGGGATCTTTCGA
GGGTGTGGAGATGACCATCCACCACCGTCTGACGCTCAGCGGCACCGCCA
GGGTCGGGGGCAAGACAACATACCACCGGCTGTCCGTGCACGACGGGGCG
ATCCTGACGGGAGAGCTGCAGTACAAGCCTTCCCTGCGAGACGAGACTGC
CGTGCCTCCGTCACCGGCCGACAAGGGCGAAGCAGAGCCAGCAACAAACA
CCGCCGTCGAGGGCGCGGTGCCTCTTGAGGCGACGAGCGATGCCGCATCG
GCGGTGGCAAGCGAGACGTGCCCTGAGAAGACAACAGCCGTGACCAAGAG
TCCTTCGAAACAGTGA
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