mRNA_Ecto-sp13_S_contig6937.17931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6937.17931.1
Unique NamemRNA_Ecto-sp13_S_contig6937.17931.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6937.17931.1 vs. uniprot
Match: A0A6H5K212_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 9.600e-53
Identity = 138/164 (84.15%), Postives = 140/164 (85.37%), Query Frame = 3 
Query:    3 VRQKGPMHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACTAGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRKPATARLGSRRRQPPPEAQATAGVSAKDAGGKSKVSDDGSPTAXXXXAAGPERGTALFRAVGGVDPDTTHLNAG 494
            VRQKGPMHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACTAG N      XXXXXXXXXXXXXXXXXXXXXXXXX     + KPATA LG RRRQPPPEAQATAGV AKDA GK+ V DDGSPTA    AAGPERG ALFRAVGGVDPDTTHLNAG
Sbjct:  929 VRQKGPMHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACTAGRNLGDNSNXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGVSKPATAGLGPRRRQPPPEAQATAGVYAKDARGKNHVGDDGSPTAA---AAGPERGPALFRAVGGVDPDTTHLNAG 1089
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6937.17931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K212_9PHAE9.600e-5384.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6937contigEcto-sp13_S_contig6937:6364..7672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size494
Hectar predicted targeting categoryother localisation
Exons2
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.7307193-CDS-Ecto-sp13_S_contig6937:6363..67861681463952.7307193-CDS-Ecto-sp13_S_contig6937:6363..6786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6937 6364..6786 -
1681463952.740591-CDS-Ecto-sp13_S_contig6937:7601..76521681463952.740591-CDS-Ecto-sp13_S_contig6937:7601..7652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6937 7602..7652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.7513278-UTR-Ecto-sp13_S_contig6937:7652..76721681463952.7513278-UTR-Ecto-sp13_S_contig6937:7652..7672Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6937 7653..7672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6937.17931.1prot_Ecto-sp13_S_contig6937.17931.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6937 6364..7652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6937.17931.1

>prot_Ecto-sp13_S_contig6937.17931.1 ID=prot_Ecto-sp13_S_contig6937.17931.1|Name=mRNA_Ecto-sp13_S_contig6937.17931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MHRSRATVSAGQDSAVQVLELVGHVLPSALADLALAMASACTAGGNVGGN
SNDDDDDDDGSDGGAGRVADTAAATARGAARGLRKPATARLGSRRRQPPP
EAQATAGVSAKDAGGKSKVSDDGSPTAAAAAAAGPERGTALFRAVGGVDP
DTTHLNAG
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mRNA from alignment at Ecto-sp13_S_contig6937:6364..7672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6937.17931.1 ID=mRNA_Ecto-sp13_S_contig6937.17931.1|Name=mRNA_Ecto-sp13_S_contig6937.17931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6937:6364..7672- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGGCAGAAAGGGCCCATGCACCGATCCAGGGCTACAGTGAGCGCG
GGACAAGACTCGGCAGTCCAGGTGAGAGGGGGGCGGGACCCCAGTATGCT
TATCGCGTTGGGTTGGAACGACGTGTTGTGAGTCTTTGCGCTTCAAAAAC
TTGGTAAGTTCTAGAAAACAAGACTCGGTTGCGGGACGGACAGAAATGCT
TGAGATTCCTGCGCCCCGCTCCCCCGAAAAAAATGCGCCAAGATTGCAAG
TTTCCACGATCAGTGCCGACACGACACGGGTGTAGAGGATTCGCTAGAGA
ACTAGCGTCTGGCGGGCGGGAGGCAGGCAGCACACATCAGCGCAACGTTG
GTGGTCGGGAACGAAACTCCTCCTTTTCTTGGAGTGTACTCTCGTGTTGC
AGACAAAAAGAATTGGGTACGTGGCTTGTTGGAGGTGGGGTGCCCCTTTG
CCCTTGGCGGACGTCCTCTCAGTAACAACTCCTTTGACGCTCGTTTCGGC
GGCACGCGCCATTTTGCCCTCGTTCGAGTTCTCTGCATTGTATTCAGAGT
GTTCGTTCTCAATTGTACTTGTAGCATATGCTTGAGGCATGTATGTTTGT
CTCTATTTGAATCGTTTTTCTTTCTCGCCCACACAGGGCGAGATACCTAA
CCCCGGGGACGAAGGGGGGAAAGATCCCTGTGTGGGTGGGATTCCCTCTC
GCCAGCGAGCAGCAGGGCACACAGTGTACCCGTTTATCGTTGCTCCGTGG
TTCAATTGATTGGTGAACGCTCGGACACCCTCTGAGCGAGAGCGCGCGCG
GAGGAGGGGGGGGGGTAGAGTGGCCCCTGCCTACAGGAGTTTCTTTGTTA
ACCATACACGTGCACGTACGTCTCCCCGCTGCGCAGGTGCTTGAGCTTGT
CGGGCACGTGCTGCCTTCGGCCCTCGCCGACCTGGCCCTGGCGATGGCGT
CCGCCTGCACGGCCGGCGGGAACGTTGGTGGCAACAGCAACGACGACGAC
GACGATGACGACGGGAGTGATGGGGGGGCGGGCCGCGTGGCCGACACTGC
TGCTGCTACCGCACGTGGAGCCGCTCGGGGGTTAAGGAAGCCGGCGACGG
CAAGGCTTGGTTCGAGGCGTCGTCAACCCCCGCCAGAGGCACAAGCAACA
GCCGGCGTTTCCGCGAAGGATGCCGGTGGCAAGAGTAAGGTCAGTGATGA
CGGTTCTCCAACGGCTGCCGCCGCCGCCGCCGCCGGCCCCGAGCGAGGCA
CGGCGCTGTTTCGAGCGGTGGGCGGGGTCGATCCCGACACGACTCACTTG
AACGCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6937:6364..7672-

>mRNA_Ecto-sp13_S_contig6937.17931.1 ID=mRNA_Ecto-sp13_S_contig6937.17931.1|Name=mRNA_Ecto-sp13_S_contig6937.17931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6937:6364..7672- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCGATCCAGGGCTACAGTGAGCGCGGGACAAGACTCGGCAGTCCA
GGTGCTTGAGCTTGTCGGGCACGTGCTGCCTTCGGCCCTCGCCGACCTGG
CCCTGGCGATGGCGTCCGCCTGCACGGCCGGCGGGAACGTTGGTGGCAAC
AGCAACGACGACGACGACGATGACGACGGGAGTGATGGGGGGGCGGGCCG
CGTGGCCGACACTGCTGCTGCTACCGCACGTGGAGCCGCTCGGGGGTTAA
GGAAGCCGGCGACGGCAAGGCTTGGTTCGAGGCGTCGTCAACCCCCGCCA
GAGGCACAAGCAACAGCCGGCGTTTCCGCGAAGGATGCCGGTGGCAAGAG
TAAGGTCAGTGATGACGGTTCTCCAACGGCTGCCGCCGCCGCCGCCGCCG
GCCCCGAGCGAGGCACGGCGCTGTTTCGAGCGGTGGGCGGGGTCGATCCC
GACACGACTCACTTGAACGCCGGG
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