mRNA_Ecto-sp13_S_contig6932.17926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6932.17926.1
Unique NamemRNA_Ecto-sp13_S_contig6932.17926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: D8LFM7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.170e-18
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:    3 RTSSKRQRKTSPQERMSGETVAAHTTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            R SSKRQRKTS  E     T A HTTS  TTARYH + Q+ C EHGC  +PSYGQAH+  A+FCSQHSKPGMT +  K+
Sbjct:    9 RASSKRQRKTSAPETTGXXTAAIHTTSRRTTARYHDQGQRYCQEHGCTAQPSYGQAHNNNAQFCSQHSKPGMTKLTKKR 87
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: D8LFM6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.100e-17
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:    9 SSKRQRKTSPQERMSGETVAAHTTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNV 227
            S++RQ KTSP E   G T A HTTSW T AR H + Q+ C E GC T+PSYGQA+ K A+FCSQHSKPGMTN+
Sbjct:   30 SNRRQGKTSPPETTGGGTAAIHTTSWRTKARCHDQGQRYCQERGCTTQPSYGQAYRKNAQFCSQHSKPGMTNL 102
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: D7G3L6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.000e-16
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:   75 TTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            T SW TTAR+HGRR++CC EHGC T PSYGQ HSK A+FCSQH   GMTNV DKK
Sbjct:   19 TQSWRTTARHHGRRRRCCQEHGCTTHPSYGQDHSKNAQFCSQHKNSGMTNVMDKK 73
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.090e-15
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 3 
Query:   54 GETVAAHTTSW--CTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            GE V A  +S   CTTARYHG+ Q+CC EHGC  RPSYG   SKKAEFCS+HSKPGMTNV  K+
Sbjct:    5 GEIVDACISSLASCTTARYHGKGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKR 68
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: A0A6H5KDL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-14
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 3 
Query:    3 RTSSKRQRKTSPQERMSGETVAAHTTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            RTSSKRQRK                    T ARYH + Q+CC EHGC T+PSYGQAHSK A+ CSQHSKPGMTN+  K+
Sbjct:  115 RTSSKRQRKXXXXXXXXXXXXXXXXXXXXTAARYHDQGQRCCQEHGCTTQPSYGQAHSKNAQLCSQHSKPGMTNLTKKR 193
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: A0A6H5K4U8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-12
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:   12 SKRQRKTSPQERMSGETVAAH-TTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            SKRQRK S    M G TVA H T S  +TAR   + Q+ C EHGC  RPSYG+AHSKKAEFC QH + GM +VR KK
Sbjct:   13 SKRQRKASAPGTMGGGTVATHKTASSRSTARCQRQGQRSCREHGCTIRPSYGKAHSKKAEFCYQHRERGMIDVRSKK 89
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: A0A6H5LQ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ79_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.400e-12
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 3 
Query:   81 SWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            SW  TAR+HG+ ++CC EHGC TRPSYGQAHSK A+FCSQH   GM +V  K+
Sbjct:   16 SWRPTARHHGQGRRCCQEHGCTTRPSYGQAHSKHAQFCSQHKLRGMVDVVKKR 68
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.190e-12
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:   90 TTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            TTARYHG+  +CC EHGC  RPSYG    KKAEFCS+HSKPGM N+  K+
Sbjct:   15 TTARYHGKGNRCCQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKR 64
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: A0A6H5L8B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.890e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query:   90 TTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            T+ARY G+ ++CC E+ CA RPSYG+AH KKAEFCSQH +PGM NV  K+
Sbjct:   19 TSARYRGQGRRCCQENCCAKRPSYGEAHGKKAEFCSQHMQPGMVNVVSKR 68
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BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Match: D7FH63_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH63_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.850e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:   93 TARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCSQHSKPGMTNVRDKK 239
            T RY G+RQ+CC  +GC  RPSYG+AH KKAEFCSQH +PGM +V +K+
Sbjct:   56 TRRYRGQRQRCCQHNGCTKRPSYGEAHGKKAEFCSQHMQPGMVDVVNKR 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6932.17926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LFM7_ECTSI1.170e-1862.03EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LFM6_ECTSI4.100e-1763.01EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G3L6_ECTSI2.000e-1672.73EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI1.090e-1567.19EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KDL0_9PHAE3.180e-1455.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U8_9PHAE1.300e-1259.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQ79_9PHAE4.400e-1264.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY67_9PHAE9.190e-1266.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8B4_9PHAE2.890e-1164.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH63_ECTSI3.850e-1163.27EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6932contigEcto-sp13_S_contig6932:2316..4341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score83.6
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LFM6
Model size1102
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-04_001580.2
Cds size666
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.2362545-UTR-Ecto-sp13_S_contig6932:2315..23621681463952.2362545-UTR-Ecto-sp13_S_contig6932:2315..2362Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6932 2316..2362 +
1681463952.271945-UTR-Ecto-sp13_S_contig6932:3952..43411681463952.271945-UTR-Ecto-sp13_S_contig6932:3952..4341Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6932 3953..4341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.2475634-CDS-Ecto-sp13_S_contig6932:2362..23951681463952.2475634-CDS-Ecto-sp13_S_contig6932:2362..2395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6932 2363..2395 +
1681463952.2571568-CDS-Ecto-sp13_S_contig6932:3319..39521681463952.2571568-CDS-Ecto-sp13_S_contig6932:3319..3952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6932 3320..3952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6932.17926.1prot_Ecto-sp13_S_contig6932.17926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6932 2363..3952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6932.17926.1

>prot_Ecto-sp13_S_contig6932.17926.1 ID=prot_Ecto-sp13_S_contig6932.17926.1|Name=mRNA_Ecto-sp13_S_contig6932.17926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MSGETVAAHTTSWCTTARYHGRRQQCCHEHGCATRPSYGQAHSKKAEFCS
QHSKPGMTNVRDKKCGHPGCTKRPSYGKDGSRKAEFCVQSSEEGMVDVIN
KRCGHTGCMKLPSYGEDGSKKQKFCAQHAQQGMVDVMKKRCGHPGCTKRP
SYGRAGSKNAAFCVQHTLQGFVDVFNKRCGHPSCTRWPLCGRAGSKKAEF
CSQHSEGGMINVRRAQGQEKR*
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mRNA from alignment at Ecto-sp13_S_contig6932:2316..4341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6932.17926.1 ID=mRNA_Ecto-sp13_S_contig6932.17926.1|Name=mRNA_Ecto-sp13_S_contig6932.17926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6932:2316..4341+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGAACGTCATCCAAGCGCCAACGGAAGACCTCCCCGCAAGAAAGAATG
AGCGGTGAGACGGTGGCAGCACACACGACGGTGAGTAATGTGGAAGGCTC
GTTCCTCTCGCGTTTCATCGCGAATATGTCATGATTTTGCGGTTGGCCAG
TGCATGCTTTGCTCGTGCTGGTTTGCCGCGTCGCTCGCTCCTGCTTTCCG
AACAGTGCCGGTTCGGGATGATCGCTCCCGAGCACCTGTACAGCTGGCGG
AATTGAGCACCGGCAAAAGTGCTATCGAGTCTTGAGACGCCACGATGCTG
AGAGGCAATCGTCGTTGCAACTCTAGCAAGTTTACATCGGTAGGTTGACT
CTGTTTCCGACTATCCCTACAACTACACTCGAAATTGTTTGATTGTGTCT
GAGGAACGGCAAGGGGAATACACGCGGACTTTGCAAGGCGCTGTTTGACT
GCTGGTAGCCGAGAAGCCATACAGGCGTGTTCTGGGTGGATTTGAATATG
GAAAGCAAGGTCTCCGAAACTTATCAGACCGTCTTTCCAATGTGCAGGAT
GATTGCCGGAAAGCTTCCGTTAGAATCCCAAAGTTCGGAGGTATTTTCGG
AGAACGCGCTTGAAGCACGGACTGTGCAACGCACTCCGAGTAGCTGACGA
CGAAGATGTTCAGACGAACGGTTCGTCGATGGAGGTCTCGCGTGAGAGGC
AACCAACCAATTTCAGGGCGGAACTGTCTTCCATGGGGTTGCAACGTGAT
GAGCATGGACGTGCCGATGAGCACAGGGCACATGATGTTGGCGGTGGAAC
ATCGATGGGTGCTTCTACCCCGGCAACAAGCACTTCGTGCAATCTATAAT
GGAGGTCATGAGATCCTTAAGCGGCGTGTGCTTTCATTGAATCACCTCTC
GCTGCTTCCCGACGTCGCTCGCATCGTTGCTGAGATGTTGACCTGTTTTA
CACTCTGGAATGTGAGTTCTGCTCGATCGCATTTGGAACCCCGCCTTTCA
ACAGTCATGGTGTACGACCGCCAGATATCATGGCCGGAGACAACAATGCT
GTCACGAGCACGGCTGTGCAACGCGGCCATCGTACGGCCAAGCCCATAGC
AAGAAGGCGGAGTTCTGCTCCCAGCACTCCAAGCCAGGGATGACAAACGT
GAGAGATAAGAAGTGCGGTCATCCAGGTTGCACGAAGAGGCCGTCATATG
GAAAAGACGGCAGCAGGAAGGCGGAGTTCTGTGTGCAGAGCAGCGAGGAA
GGCATGGTCGATGTCATCAACAAGAGGTGTGGCCACACAGGGTGCATGAA
GCTGCCTTCATATGGCGAAGACGGCAGCAAGAAGCAGAAGTTCTGCGCTC
AACACGCGCAACAGGGCATGGTCGATGTCATGAAGAAGAGGTGCGGTCAT
CCAGGTTGCACGAAGCGGCCGTCGTACGGTAGAGCCGGCAGCAAGAATGC
GGCGTTCTGTGTTCAGCATACGCTACAGGGCTTTGTCGATGTCTTCAACA
AGAGGTGCGGCCATCCAAGTTGCACGAGATGGCCGTTGTGTGGTAGAGCC
GGCAGCAAGAAGGCGGAGTTCTGCTCTCAGCACAGCGAGGGAGGAATGAT
TAATGTGCGACGTGCGCAGGGCCAGGAGAAGCGCTAGGGCGTATTGCCCC
ACGTATATTCTCGTACCGTTCCACAAGGTCGTTAAGTCCATTATGGTGGA
CCCTGCTACGTTTGCGCCAGATACATGGCTCGCTTGGCAAGGGGATTTTT
CACGAACGTTGTCGTTCAGTCTTGACCAACAGTGCATTTAACGTGCATGG
CGCGTGAGTGCATGTAGCATGACCATGTATTTCGCCATTGGTTTCGTCGG
CCTGTACACGCTGTACATGGATGTAGGGGTTGCACAAGGTGTATTATCGT
CGTGTTCCTGGGTTCATTTTTGGGCAGGAGTACGGGTACAGGGATAAGCT
ATGGTCTCGGGCCCCGTGCGAATGTAGGTTTAGTGTACGGATTGGACGAT
GCCATCGAAGTCAAAAAAGAAACGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6932:2316..4341+

>mRNA_Ecto-sp13_S_contig6932.17926.1 ID=mRNA_Ecto-sp13_S_contig6932.17926.1|Name=mRNA_Ecto-sp13_S_contig6932.17926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6932:2316..4341+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTGAGACGGTGGCAGCACACACGACGTCATGGTGTACGACCGC
CAGATATCATGGCCGGAGACAACAATGCTGTCACGAGCACGGCTGTGCAA
CGCGGCCATCGTACGGCCAAGCCCATAGCAAGAAGGCGGAGTTCTGCTCC
CAGCACTCCAAGCCAGGGATGACAAACGTGAGAGATAAGAAGTGCGGTCA
TCCAGGTTGCACGAAGAGGCCGTCATATGGAAAAGACGGCAGCAGGAAGG
CGGAGTTCTGTGTGCAGAGCAGCGAGGAAGGCATGGTCGATGTCATCAAC
AAGAGGTGTGGCCACACAGGGTGCATGAAGCTGCCTTCATATGGCGAAGA
CGGCAGCAAGAAGCAGAAGTTCTGCGCTCAACACGCGCAACAGGGCATGG
TCGATGTCATGAAGAAGAGGTGCGGTCATCCAGGTTGCACGAAGCGGCCG
TCGTACGGTAGAGCCGGCAGCAAGAATGCGGCGTTCTGTGTTCAGCATAC
GCTACAGGGCTTTGTCGATGTCTTCAACAAGAGGTGCGGCCATCCAAGTT
GCACGAGATGGCCGTTGTGTGGTAGAGCCGGCAGCAAGAAGGCGGAGTTC
TGCTCTCAGCACAGCGAGGGAGGAATGATTAATGTGCGACGTGCGCAGGG
CCAGGAGAAGCGCTAG
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