mRNA_Ecto-sp13_S_contig693.17924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig693.17924.1
Unique NamemRNA_Ecto-sp13_S_contig693.17924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig693.17924.1 vs. uniprot
Match: D8LIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.170e-9
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  313 KSAGDGAVRGGGPEHAGRGVMIAGRLPGISLDRLSPSEAS 432
            KS GDGAV GGGPEHAGRGVMIAGRLPGISLDRLS +  S
Sbjct:  133 KSTGDGAVGGGGPEHAGRGVMIAGRLPGISLDRLSSTTPS 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig693.17924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIU3_ECTSI2.170e-985.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig693contigEcto-sp13_S_contig693:1033..2067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LIU3
Model size577
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00166,ko:K09422
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008677,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
EC1.2.4.4
Cds size573
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.9511821-CDS-Ecto-sp13_S_contig693:1034..11911681463951.9511821-CDS-Ecto-sp13_S_contig693:1034..1191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig693 1035..1191 -
1681463951.9643178-CDS-Ecto-sp13_S_contig693:1651..20671681463951.9643178-CDS-Ecto-sp13_S_contig693:1651..2067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig693 1652..2067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig693.17924.1prot_Ecto-sp13_S_contig693.17924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig693 1035..2067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig693.17924.1

>prot_Ecto-sp13_S_contig693.17924.1 ID=prot_Ecto-sp13_S_contig693.17924.1|Name=mRNA_Ecto-sp13_S_contig693.17924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
SPSAPRKRGREEDGDDDGRQRQEQPRKAVAGAASPPPPTCGGSSNTPAEQ
SPAATAPVSSAAASPAGADAGLRAAAAAAPAASSGGNATNAAAAAAEADV
DGGGKSAGDGAVRGGGPEHAGRGVMIAGRLPGISLDRLSPSEASPPTASI
VSGFPSSGRIIPPSAAAAAAAAAAAMAAATNGADFDAAAAA
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mRNA from alignment at Ecto-sp13_S_contig693:1033..2067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig693.17924.1 ID=mRNA_Ecto-sp13_S_contig693.17924.1|Name=mRNA_Ecto-sp13_S_contig693.17924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig693:1033..2067- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGTCGGCGCCCAGAAAGCGGGGCCGAGAAGAAGACGGAGACGACGA
CGGACGCCAGCGGCAGGAGCAGCCGCGCAAAGCAGTCGCGGGGGCGGCGT
CGCCGCCGCCTCCGACGTGTGGTGGCAGCAGCAACACCCCGGCGGAACAA
TCCCCTGCCGCAACGGCCCCTGTTTCTTCTGCCGCTGCTTCGCCTGCCGG
AGCAGACGCGGGACTGCGGGCGGCGGCGGCGGCGGCACCAGCGGCAAGCA
GCGGTGGGAACGCTACAAACGCGGCGGCGGCTGCGGCCGAGGCTGACGTT
GATGGCGGGGGGAAGAGCGCTGGGGATGGGGCTGTGAGAGGTGGTGGGCC
GGAGCATGCGGGACGTGGGGTCATGATCGCCGGGAGGCTGCCTGGGATAT
CGCTGGACCGCCTTTCGTGAGTGGTTGTTTTAGTTTGATTGTCCTCGAAC
GTGCCGTAGGCTACTGCTGTTGCCACCGGATGGTGTGACTGCGTTGCCCG
AGACAAACTAGAAAAATAACCTGCTTAGACGTGGCACCGCTGCCTCGACT
GGGCGAGGAAAACCGCTTGAAAATTCTCAGTAGGTCTAGCTTCTGACTCG
CGAAGAAATCGAACGACTGAACATTTTGATATCCCTTCCACATTTGTGGT
GTGTCATCTCATGGCTGGAAGGCCGGAAGCACGAACACTGCTCCACAGCT
CATTGCAAGGCGAGGACGGATCCAAACTTGCGTTTCATCGGGCCTAATGC
GTTTGCGTCCAAACGAACCGCCCAAATCTGCCTCCGGCGCAATGCCACGC
TGGGGTTTGTGTCTGTTTCCCCCCCCCCCCCCCACCCTCTGAATCCTCGA
CAATTCCCCCCGAAACTCGTTTGCAGGCCGTCAGAGGCGTCCCCTCCTAC
CGCCAGCATCGTCAGCGGCTTCCCCTCCAGCGGCCGCATCATACCCCCTT
CCGCAGCCGCCGCAGCCGCAGCCGCCGCAGCCGCCATGGCCGCTGCCACG
AACGGCGCCGACTTCGATGCTGCCGCCGCTGCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig693:1033..2067-

>mRNA_Ecto-sp13_S_contig693.17924.1 ID=mRNA_Ecto-sp13_S_contig693.17924.1|Name=mRNA_Ecto-sp13_S_contig693.17924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig693:1033..2067- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGTCGGCGCCCAGAAAGCGGGGCCGAGAAGAAGACGGAGACGACGA
CGGACGCCAGCGGCAGGAGCAGCCGCGCAAAGCAGTCGCGGGGGCGGCGT
CGCCGCCGCCTCCGACGTGTGGTGGCAGCAGCAACACCCCGGCGGAACAA
TCCCCTGCCGCAACGGCCCCTGTTTCTTCTGCCGCTGCTTCGCCTGCCGG
AGCAGACGCGGGACTGCGGGCGGCGGCGGCGGCGGCACCAGCGGCAAGCA
GCGGTGGGAACGCTACAAACGCGGCGGCGGCTGCGGCCGAGGCTGACGTT
GATGGCGGGGGGAAGAGCGCTGGGGATGGGGCTGTGAGAGGTGGTGGGCC
GGAGCATGCGGGACGTGGGGTCATGATCGCCGGGAGGCTGCCTGGGATAT
CGCTGGACCGCCTTTCGCCGTCAGAGGCGTCCCCTCCTACCGCCAGCATC
GTCAGCGGCTTCCCCTCCAGCGGCCGCATCATACCCCCTTCCGCAGCCGC
CGCAGCCGCAGCCGCCGCAGCCGCCATGGCCGCTGCCACGAACGGCGCCG
ACTTCGATGCTGCCGCCGCTGCC
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