prot_Ecto-sp13_S_contig69208.17914.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig69208.17914.1
Unique Nameprot_Ecto-sp13_S_contig69208.17914.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.140e-76
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 108
            MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD
Sbjct:    1 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 108
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BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 2.690e-68
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0 
Query:    1 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 108
            MRQGKFLFTVKQMKNRRDFGAVLKLLHEAER G+GATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD
Sbjct:  188 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERTGEGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI3.140e-76100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE2.690e-6898.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 40..68
e-value: 0.0043
score: 17.2
coord: 80..98
e-value: 0.28
score: 11.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 40..73
e-value: 2.2E-7
score: 28.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..71
score: 8.923
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 72..102
score: 6.401
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..105
e-value: 1.6E-13
score: 52.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69208contigEcto-sp13_S_contig69208:376..699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69208.17914.1mRNA_Ecto-sp13_S_contig69208.17914.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig69208 358..699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig69208.17914.1 ID=prot_Ecto-sp13_S_contig69208.17914.1|Name=mRNA_Ecto-sp13_S_contig69208.17914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGK
GGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQAR
DVWGAQLD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf