mRNA_Ecto-sp13_S_contig69208.17914.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69208.17914.1
Unique NamemRNA_Ecto-sp13_S_contig69208.17914.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 9.900e-77
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:   19 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 342
            MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD
Sbjct:    1 MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 108
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BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 3.300e-73
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 1 
Query:    1 ISHDTSMRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 342
            ISHDTSMRQGKFLFTVKQMKNRRDFGAVLKLLHEAER G+GATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD
Sbjct:  182 ISHDTSMRQGKFLFTVKQMKNRRDFGAVLKLLHEAERTGEGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWGAQLD 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69208.17914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI9.900e-77100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE3.300e-7398.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69208contigEcto-sp13_S_contig69208:358..699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score231.9
Seed ortholog evalue1.4e-58
Seed eggNOG ortholog2880.D7FKL0
Model size342
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-09_000630.1
Cds size324
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.11163-UTR-Ecto-sp13_S_contig69208:357..3751681463951.11163-UTR-Ecto-sp13_S_contig69208:357..375Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69208 358..375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.1247733-CDS-Ecto-sp13_S_contig69208:375..6991681463951.1247733-CDS-Ecto-sp13_S_contig69208:375..699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69208 376..699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69208.17914.1prot_Ecto-sp13_S_contig69208.17914.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69208 376..699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69208.17914.1

>prot_Ecto-sp13_S_contig69208.17914.1 ID=prot_Ecto-sp13_S_contig69208.17914.1|Name=mRNA_Ecto-sp13_S_contig69208.17914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MRQGKFLFTVKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGK
GGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQAR
DVWGAQLD
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mRNA from alignment at Ecto-sp13_S_contig69208:358..699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69208.17914.1 ID=mRNA_Ecto-sp13_S_contig69208.17914.1|Name=mRNA_Ecto-sp13_S_contig69208.17914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69208:358..699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCCCACGACACCAGCATGCGGCAGGGGAAGTTCCTCTTCACCGTCAA
GCAGATGAAGAACAGGCGAGACTTCGGCGCGGTGCTGAAGCTGCTACACG
AGGCGGAGCGCAGGGGGGACGGCGCGACCCCCAAGATGTACTCGTGCTGC
ATCGGGTACATGGGCAAGGGGGGAAACTGGGAAGGGGCGCTGGACGTGCT
GGACCGGATGCACGCTCTGGGGAACAAGCCGGACGCCTTCTGCATCAACG
ACGGGATGAACGCGTGCAAGCGGGCGCGCAAGTACGACAAGGCGCTGTGG
GTGTTTGAGCAGGCGCGGGATGTCTGGGGGGCTCAGCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69208:358..699+

>mRNA_Ecto-sp13_S_contig69208.17914.1 ID=mRNA_Ecto-sp13_S_contig69208.17914.1|Name=mRNA_Ecto-sp13_S_contig69208.17914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69208:358..699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGGGGAAGTTCCTCTTCACCGTCAAGCAGATGAAGAACAGGCG
AGACTTCGGCGCGGTGCTGAAGCTGCTACACGAGGCGGAGCGCAGGGGGG
ACGGCGCGACCCCCAAGATGTACTCGTGCTGCATCGGGTACATGGGCAAG
GGGGGAAACTGGGAAGGGGCGCTGGACGTGCTGGACCGGATGCACGCTCT
GGGGAACAAGCCGGACGCCTTCTGCATCAACGACGGGATGAACGCGTGCA
AGCGGGCGCGCAAGTACGACAAGGCGCTGTGGGTGTTTGAGCAGGCGCGG
GATGTCTGGGGGGCTCAGCTGGAC
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