mRNA_Ecto-sp13_S_contig6920.17911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6920.17911.1
Unique NamemRNA_Ecto-sp13_S_contig6920.17911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6920.17911.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 8.500e-40
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 RGPPGGAPAVAGGVGIRSTKASKMHNPVDAEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGMPGSKEAEVFYLQQAMEERNERN 261
            RGPPGGAPA  GGVG+RSTKAS MHNPVD EELARIQAKKESYRRDLEAQMAEHTKLQDQRKQG+PGSKEAEVF+LQ+AMEER+ERN
Sbjct:  551 RGPPGGAPAAGGGVGVRSTKASTMHNPVDPEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGVPGSKEAEVFHLQKAMEERSERN 637
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BLAST of mRNA_Ecto-sp13_S_contig6920.17911.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.010e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 RGPPGGAPAVAGGVGIRSTKASKMHNPVDAEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGMPGSKEAEVFYLQQAMEERNERN 261
            R PP GAPAV GGVG+RSTKASKMHNPVD  ELA+IQAKKESYRRDLEAQMAE TKLQ+QRKQGM  SKEAEVFYLQQAMEERNERN
Sbjct:  554 RDPPSGAPAVGGGVGVRSTKASKMHNPVDPVELAKIQAKKESYRRDLEAQMAERTKLQNQRKQGMHRSKEAEVFYLQQAMEERNERN 640
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6920.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV6_ECTSI8.500e-4089.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL2_9PHAE2.010e-3687.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6920contigEcto-sp13_S_contig6920:62..786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002630.1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.967946-CDS-Ecto-sp13_S_contig6920:61..1721681463950.967946-CDS-Ecto-sp13_S_contig6920:61..172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 62..172 -
1681463950.9799995-CDS-Ecto-sp13_S_contig6920:636..7861681463950.9799995-CDS-Ecto-sp13_S_contig6920:636..786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 637..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6920.17911.1prot_Ecto-sp13_S_contig6920.17911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6920 62..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6920.17911.1

>prot_Ecto-sp13_S_contig6920.17911.1 ID=prot_Ecto-sp13_S_contig6920.17911.1|Name=mRNA_Ecto-sp13_S_contig6920.17911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
RGPPGGAPAVAGGVGIRSTKASKMHNPVDAEELARIQAKKESYRRDLEAQ
MAEHTKLQDQRKQGMPGSKEAEVFYLQQAMEERNERN
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mRNA from alignment at Ecto-sp13_S_contig6920:62..786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6920.17911.1 ID=mRNA_Ecto-sp13_S_contig6920.17911.1|Name=mRNA_Ecto-sp13_S_contig6920.17911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:62..786- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCCCTCCCGGCGGGGCTCCAGCAGTGGCGGGTGGGGTTGGGATACG
TTCCACGAAGGCCAGTAAAATGCACAATCCTGTCGACGCGGAGGAACTGG
CCAGGATCCAAGCAAAGAAGGAGTCTTACCGGAGAGATCTGGAGGCTCAG
GTGAACATGACAGTATCTCTCGGGCCGAGAGAGTGATGTCCGGGACGGGG
TCAGTCATGAATTGTGAATCGCATGTTTACGTTGTACTTCACGATCTGCA
TGTTCTTAAAGCATATTACTCTCATGTCAAGAAATAGTTGGCCTTGTGCA
TGATTCGTATTTCTGTCCCCGAGCTTTCTTGAGAGACTGTCCTCTACTGC
TCGGCCCATCCCATTCGGACAACAACAACCACGAACTTCATATCGCTTGC
ATTAATGCCGATCTCCCGCACGATACGCACCATTTATGTCATTTGCTTCA
CGATCTGTGAATTTGGCTGAAGTCATGATCATGGCCGATCCACGGTACAG
CCTCTTCCCCCCGAAACCCCCGAAAATTTAATGCAACCTGCTGCCACAAG
TGCTGATCAATTGGTGTTCGTAAGCATCCCGCTCCAACGTCTGGGCACCG
TGGGGTCAACATAGATGGCCGAGCACACAAAACTCCAAGACCAGCGAAAG
CAGGGAATGCCCGGATCAAAGGAGGCCGAGGTTTTCTACCTGCAGCAAGC
TATGGAAGAGAGAAACGAACGAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6920:62..786-

>mRNA_Ecto-sp13_S_contig6920.17911.1 ID=mRNA_Ecto-sp13_S_contig6920.17911.1|Name=mRNA_Ecto-sp13_S_contig6920.17911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:62..786- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCCCTCCCGGCGGGGCTCCAGCAGTGGCGGGTGGGGTTGGGATACG
TTCCACGAAGGCCAGTAAAATGCACAATCCTGTCGACGCGGAGGAACTGG
CCAGGATCCAAGCAAAGAAGGAGTCTTACCGGAGAGATCTGGAGGCTCAG
ATGGCCGAGCACACAAAACTCCAAGACCAGCGAAAGCAGGGAATGCCCGG
ATCAAAGGAGGCCGAGGTTTTCTACCTGCAGCAAGCTATGGAAGAGAGAA
ACGAACGAAAC
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