mRNA_Ecto-sp13_S_contig6920.17912.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6920.17912.1
Unique NamemRNA_Ecto-sp13_S_contig6920.17912.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6920.17912.1 vs. uniprot
Match: A0A6H5KLL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.610e-49
Identity = 83/101 (82.18%), Postives = 89/101 (88.12%), Query Frame = -1 
Query:    1 VADGISTSGLPPPQREFADDGERRGGRWGTSGSYPERGGGYTVNRSILPEFGGKNARQESWENTNPSLGHEYNRDVHLGPIRDHREQQDHWYFGPRGPPGG 303
            VA+GISTSGLPPP+REFADDGERRG RWGTS SYP  G GY ++RSILPEFGGKNARQESWE T+PS+ H YNRDVHL PIRDHREQQDHWYFGPR PP G
Sbjct:  459 VAEGISTSGLPPPRREFADDGERRGERWGTSESYPATGSGYPIHRSILPEFGGKNARQESWETTHPSVRHGYNRDVHLVPIRDHREQQDHWYFGPRDPPSG 559
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BLAST of mRNA_Ecto-sp13_S_contig6920.17912.1 vs. uniprot
Match: D7FYV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 5.010e-41
Identity = 75/101 (74.26%), Postives = 83/101 (82.18%), Query Frame = -1 
Query:    1 VADGISTSGLPPPQREFADDGERRGGRWGTSGSYPERGGGYTVNRSILPEFGGKNARQESWENTNPSLGHEYNRDVHLGPIRDHREQQDHWYFGPRGPPGG 303
            VADGIS SGLPPP+R+F DDGERRG RWGTSG YPERGGGY  NR+ LPEFGGK     SW+ TNPS+G  ++R+VH GPIRDHREQQD  YFGPRGPPGG
Sbjct:  461 VADGISASGLPPPRRDFVDDGERRGERWGTSGPYPERGGGYPGNRTRLPEFGGK-----SWDITNPSVGGGHDRNVHPGPIRDHREQQDRRYFGPRGPPGG 556
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6920.17912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLL2_9PHAE1.610e-4982.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYV6_ECTSI5.010e-4174.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6920contigEcto-sp13_S_contig6920:769..1071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.9363773-CDS-Ecto-sp13_S_contig6920:768..10711681463950.9363773-CDS-Ecto-sp13_S_contig6920:768..1071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 769..1071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6920.17912.1prot_Ecto-sp13_S_contig6920.17912.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6920 769..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6920.17912.1

>prot_Ecto-sp13_S_contig6920.17912.1 ID=prot_Ecto-sp13_S_contig6920.17912.1|Name=mRNA_Ecto-sp13_S_contig6920.17912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
PAGRAPRSKVPMILLFTMVPNRTQMYISVVLMPQGGVSVLPALLPGILAS
KLRQYATINGVPASSFWIGSTRAPTSPPPFSIVREFPLRGRKPGGGNTIS
D
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mRNA from alignment at Ecto-sp13_S_contig6920:769..1071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6920.17912.1 ID=mRNA_Ecto-sp13_S_contig6920.17912.1|Name=mRNA_Ecto-sp13_S_contig6920.17912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:769..1071+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCGGGAGGGCCCCTAGGTCCAAAGTACCAATGATCCTGCTGTTCAC
GATGGTCCCTAATCGGACCCAGATGTACATCTCTGTTGTACTCATGCCCC
AAGGAGGGGTTAGTGTTCTCCCAGCTCTCCTGCCTGGCATTCTTGCCTCC
AAACTCCGGCAATATGCTACGATTAACGGTGTACCCGCCTCCTCTTTCTG
GATAGGATCCACTCGTGCCCCAACGTCCCCCCCGCCGTTCTCCATCGTCC
GCGAATTCCCTCTGAGGGGGAGGAAGCCCGGAGGTGGAAATACCATCAGC
GAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6920:769..1071+

>mRNA_Ecto-sp13_S_contig6920.17912.1 ID=mRNA_Ecto-sp13_S_contig6920.17912.1|Name=mRNA_Ecto-sp13_S_contig6920.17912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:769..1071+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCGGGAGGGCCCCTAGGTCCAAAGTACCAATGATCCTGCTGTTCAC
GATGGTCCCTAATCGGACCCAGATGTACATCTCTGTTGTACTCATGCCCC
AAGGAGGGGTTAGTGTTCTCCCAGCTCTCCTGCCTGGCATTCTTGCCTCC
AAACTCCGGCAATATGCTACGATTAACGGTGTACCCGCCTCCTCTTTCTG
GATAGGATCCACTCGTGCCCCAACGTCCCCCCCGCCGTTCTCCATCGTCC
GCGAATTCCCTCTGAGGGGGAGGAAGCCCGGAGGTGGAAATACCATCAGC
GAC
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