mRNA_Ecto-sp13_S_contig692.17908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig692.17908.1
Unique NamemRNA_Ecto-sp13_S_contig692.17908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig692.17908.1 vs. uniprot
Match: D8LE57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE57_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.620e-31
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  120 MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWQAATEDYRRHQKV 302
            MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEW AATEDYRR+Q +
Sbjct:    1 MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHAATEDYRRYQNM 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig692.17908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE57_ECTSI2.620e-3193.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig692contigEcto-sp13_S_contig692:157..2712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.4640694-CDS-Ecto-sp13_S_contig692:156..3371681463950.4640694-CDS-Ecto-sp13_S_contig692:156..337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig692 157..337 +
1681463950.4756615-CDS-Ecto-sp13_S_contig692:1041..10941681463950.4756615-CDS-Ecto-sp13_S_contig692:1041..1094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig692 1042..1094 +
1681463950.4909122-CDS-Ecto-sp13_S_contig692:2643..27121681463950.4909122-CDS-Ecto-sp13_S_contig692:2643..2712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig692 2644..2712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig692.17908.1prot_Ecto-sp13_S_contig692.17908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig692 157..2712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig692.17908.1

>prot_Ecto-sp13_S_contig692.17908.1 ID=prot_Ecto-sp13_S_contig692.17908.1|Name=mRNA_Ecto-sp13_S_contig692.17908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
AYTADVGWTTLTRNHYVCVRSRLSPVFFLPQTQSVALSQGWCWRSSCMPP
LRRGSSRWRLEATSLPALRSCTCPRLIRACLTQCAPSGKPPRRTTVGTKR
*
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mRNA from alignment at Ecto-sp13_S_contig692:157..2712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig692.17908.1 ID=mRNA_Ecto-sp13_S_contig692.17908.1|Name=mRNA_Ecto-sp13_S_contig692.17908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig692:157..2712+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATACACAGCGGACGTTGGGTGGACCACACTCACACGCAACCATTACGT
CTGTGTGCGCTCCCGACTCTCGCCAGTTTTCTTCCTTCCTCAGACACAAA
GTGTTGCTCTTTCTCAAGGATGGTGCTGGAGAAGCTCGTGCATGCCGCCC
CTACGAAGAGGGTCATCGCGATGGCGGTTGGGTAAGCGCACACCTTGTGC
AATCTAGCGAGAAAATTGAGATCCAACCGCCACGTGGTAATCGTACAATA
TCCATAGCTGGCTTCCGCGGCCTCAGTGCTTGAGATCGATATTGTATGTC
CATAGACTGCTGTGGGCGGGTGCGTAGTGGGTGACTGCGAGAAAAGAATG
AATGTGTGTCTACAGCAGTAGCTCAGTGTCAGAGAATGTCAATCGCGGAT
CGTACCGAGTTTATGTTGATGATGTGTCGAAAGTTATTTTCAGATCCTCG
CCTGTGTCGCACCATTTACCAAGTGTCATTCAGTACACCCTGATCTTGTT
CTCCGGTGTTTGCTACGCGTTTTTTGGGTTCCCACCTGAACAAAGCCTGC
CGACGGCCGTGCAATCTCGAGGCACGATCAGTACTACATGTACTCTGACT
GAGACCACAAGGCGTACGTGTGCCGTGCTGTTTTTGTTGTTTCGCATTGC
GCCTTCTCGGCTTAGTTTCTCCATGTTACCCTCCCTGTGGCATTGTGCAG
GAGCACCCAGGCATGCGAAGCTGGGAATATCCTACTACTTCTGATTTCGC
TAGGAACACTCCACCACCACCTGTAACCTAAAAAAGAAGAGCATCGAACG
TTGCTGATCCATCGATCTCACCATGTCACTGACTGTCACCACGACCCCCT
TCGCCAAACCTTCGTCTCGTTGTGCTCCGCAACAGAGGCTACCTCACTAC
CGGCGCTGCGATCTTGTACCTGTCCCAGATTAATTCGAGTGAGTGTCATC
GGCCAAACTCTTCATTGGACAGATTCGTCGCGAGTTGCGAAGGGATGTGC
AGGTGGCAGCTCAAATCTATTAGTCTCTGCGAATACTGTTTCCGTACGGC
TTTCAAATCCAACGAAAAAATTACTTCCATGTGGCTTTTACTTGAGGGAA
CAGATCATCTGCGCAATAATGCGGAGGAGGGGGGCGCCTCCAGACGCGCC
TCACGTCGGCTGGGCATCCATGCCGTCGCTCGAGTGTGATCCACTTGTTG
TAGTATGGATTCAACGTAGGACTTACAATTGTTCCAAAAAGCGGAGTGTA
GTTTCAGGAGGCTGTTCGAACGAGTGCACAACAAGTCCGTGCCGTGACGG
AAATCGTGTGTACGGGCCCGCAACTAAGAAAATTTATGTTCAGAAAAAAA
GGCTTTCACGAAAAATAAGAAAAAAGGACCAAGAAACACAGCTCAATCTC
GGCCACAAAGTAAGAAACGTCCCAAGAAAAACATGATCGTGCGATACCCC
CAATACATAAGAAACAAGGGTTGCTGGGGGAGCGTTTCCAATAAGAGAAA
CGTTTCACTGCTGCTGCTCTTTCCGTGCTTTCACCCCCCCGGTATCTAGC
GGGACAACGTTTTTTGTCGTAGGGGGGGAGCGTGGTTGTTGGCGCTGCCC
CCCCCGCCTCCGCGCTATTTAGTTACTCGGCGCCTCCGCGGGCTGCTTTG
CCCACTGCTGCATGCATGTTTGGTGTTGTTGTATGCATATTCTTCTTCAG
AAATAAAAGAAAACGAGAAATGACGGAATCAGGACAATGCGACAGTCCAA
AGGAATAAGAAGTGCCTTTTAAGAAAATGGACGCCTTCGGCTGGTCTTTC
GACGCGAAATAAGGGATTGAGCCTCGACCCGATTTTTACGTTTCTTATCT
CCGGGCCCGTACTGTATGCCATCACGTCTATTCCGGAAGCGGAAGTTGGC
CTTTTTTCCACCTTTCGGTGCGACTTCGGACGCAGCAGCCGGGGACGCAC
ACAAGAAGAAGGCACAAGTGCTCCACCTTTTAGTTTCAGCAAGCAGGTCC
AGTCGTCCCTGTCCCTCGGCGAACATGAGTTCAATATCTTGGGGTGTGCA
CGCGGAGAAGATTACAGCAGTCGTGATCAACATTTTAAAAGATAATTCGT
GTGATTTCGCCCGAGATCCAAAATAACTCACTTTCGGAACAACGATAAGG
TAGTGCCATCTGAACCACTTGGGCGACCCGCTGGCTGCTACAGTTTCGGT
AAATACTGTGAATATGAGGAACATGCGAACGTGACACATAAATTAGATCG
GGCTGGATGTTTCCTTGACTCAGCACATGCCGTAGACCGGTGAAGACTAC
TCGACGCAGTTTCCAGTATTCTCCGGCTGTTGTATTGCGAGCATGTCGCC
GTCGGTACATTGTCATGCCCATGCCGGACGGTGGCGCTCACTGTGAATTC
ACAGGCGCCAAGGCGCTTCGGGATCAGCGTGCTTTTCCTACACTTGCTCA
TCTGAAACTGTGCTCGCCGTCGCTACATCCTGTGCAGGCATGCCTGACAC
AATGCGCGCCGAGTGGCAAGCCGCCACGGAGGACTACCGTCGGCACCAAA
AGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig692:157..2712+

>mRNA_Ecto-sp13_S_contig692.17908.1 ID=mRNA_Ecto-sp13_S_contig692.17908.1|Name=mRNA_Ecto-sp13_S_contig692.17908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig692:157..2712+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATACACAGCGGACGTTGGGTGGACCACACTCACACGCAACCATTACGT
CTGTGTGCGCTCCCGACTCTCGCCAGTTTTCTTCCTTCCTCAGACACAAA
GTGTTGCTCTTTCTCAAGGATGGTGCTGGAGAAGCTCGTGCATGCCGCCC
CTACGAAGAGGGTCATCGCGATGGCGGTTGGAGGCTACCTCACTACCGGC
GCTGCGATCTTGTACCTGTCCCAGATTAATTCGAGCATGCCTGACACAAT
GCGCGCCGAGTGGCAAGCCGCCACGGAGGACTACCGTCGGCACCAAAAGG
TGA
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