prot_Ecto-sp13_S_contig69197.17907.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig69197.17907.1
Unique Nameprot_Ecto-sp13_S_contig69197.17907.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69197.17907.1 vs. uniprot
Match: A0A7S2FAX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAX3_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.270e-5
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 0 
Query:   19 ACGRGGCWERAVRLVDDMHAEGLVPDSLTYRRVIG 53
            ACG+GG W+RA+R++++MH  G+ PD ++Y   IG
Sbjct:    1 ACGKGGKWDRALRILEEMHRSGVAPDIISYSTAIG 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69197.17907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2FAX3_9STRA4.270e-548.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 19..45
e-value: 1.7E-6
score: 25.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 10..63
e-value: 3.7E-7
score: 31.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69197contigEcto-sp13_S_contig69197:414..665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69197.17907.1mRNA_Ecto-sp13_S_contig69197.17907.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig69197 414..665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig69197.17907.1 ID=prot_Ecto-sp13_S_contig69197.17907.1|Name=mRNA_Ecto-sp13_S_contig69197.17907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
ATCLSLLLPRGTNAVAHQACGRGGCWERAVRLVDDMHAEGLVPDSLTYRR
VIGARCGLVAVNDGALVPVSREGGLVPAHRERL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf