mRNA_Ecto-sp13_S_contig6917.17906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6917.17906.1
Unique NamemRNA_Ecto-sp13_S_contig6917.17906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6917.17906.1 vs. uniprot
Match: D8LJY3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY3_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.590e-32
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 3 
Query:    3 RNGVDEDSVGMAMFQLGVCVLQGGRRLEEAETLLRNALDVETKRLGSXXXXXXXXXXXXXXXXXXXXXXEEAETVLGECVKTLEASLGAGHEEVAAAKSMLDSCAATE 326
            RNGVDEDSVG+AMFQLGVCVLQGGRRLEEAETLLRNALDVET+RLG XXXXXXXXXXXXXXXXXXXXXXEEAE VLGECV+TLEA LGA HEEVAAAKSMLD CAATE
Sbjct:  567 RNGVDEDSVGLAMFQLGVCVLQGGRRLEEAETLLRNALDVETQRLGXXXXXXXXXXXXXXXXXXXXXXXEEAERVLGECVETLEARLGAAHEEVAAAKSMLDLCAATE 674
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BLAST of mRNA_Ecto-sp13_S_contig6917.17906.1 vs. uniprot
Match: A0A6H5L0N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N2_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.800e-32
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 3 
Query:    3 RNGVDEDSVGMAMFQLGVCVLQGGRRLEEAETLLRNALDVETKRLGSXXXXXXXXXXXXXXXXXXXXXXEEAETVLGECVKTLEASLGAGHEEVAAAKSMLDSCAATE 326
            RNGVDEDSVG+AMFQLGVCVLQGGRRLEEAETLLRNALDVET+RL  XXXXXXXXXXXXXXXXXXXXXX EAE VLGECVKTLEA LGAGHEEVAAAKSMLDSCAATE
Sbjct: 1253 RNGVDEDSVGLAMFQLGVCVLQGGRRLEEAETLLRNALDVETQRLXXXXXXXXXXXXXXXXXXXXXXXXXEAERVLGECVKTLEARLGAGHEEVAAAKSMLDSCAATE 1360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6917.17906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJY3_ECTSI2.590e-3292.59Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5L0N2_9PHAE3.800e-3293.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6917contigEcto-sp13_S_contig6917:3768..6814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2183
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_007440.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.3701108-UTR-Ecto-sp13_S_contig6917:3767..40731681463950.3701108-UTR-Ecto-sp13_S_contig6917:3767..4073Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6917 3768..4073 -
1681463950.3912802-UTR-Ecto-sp13_S_contig6917:4364..58121681463950.3912802-UTR-Ecto-sp13_S_contig6917:4364..5812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6917 4365..5812 -
1681463950.4020975-UTR-Ecto-sp13_S_contig6917:6676..68141681463950.4020975-UTR-Ecto-sp13_S_contig6917:6676..6814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6917 6677..6814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.3812132-CDS-Ecto-sp13_S_contig6917:4073..43641681463950.3812132-CDS-Ecto-sp13_S_contig6917:4073..4364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6917 4074..4364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6917.17906.1prot_Ecto-sp13_S_contig6917.17906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6917 4074..4364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6917.17906.1

>prot_Ecto-sp13_S_contig6917.17906.1 ID=prot_Ecto-sp13_S_contig6917.17906.1|Name=mRNA_Ecto-sp13_S_contig6917.17906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MTSLEQFTMLFCHGGCVHPHVRNNCKKIGIITRGLVQRVKKFTSITEMSP
WVGKVLRVLDGKSFFFLCSFRTIENLGNTLLLPLLQQHGEENRTML*
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mRNA from alignment at Ecto-sp13_S_contig6917:3768..6814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6917.17906.1 ID=mRNA_Ecto-sp13_S_contig6917.17906.1|Name=mRNA_Ecto-sp13_S_contig6917.17906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6917:3768..6814- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGGAACGGCGTCGACGAGGACTCCGTGGGGATGGCCATGTTCCAGCTG
GGCGTATGCGTTCTGCAGGGCGGCCGGCGGCTCGAGGAGGCGGAGACGTT
GCTGAGGAACGCTCTCGACGTGGAGACAAAGAGGCTCGGTGAGTTCCGTG
TTGTTTTGCGGTCACCTGCTGCCAAAGGCTCGGCGGGATCACACTGGCGA
AGAACATACCACGTAGATGGCGTGTTGTAGTGGCGTGCGTTTTCGGGCGC
TGCCTTCCGACGACGACGACGGTTGCTGTGCGAACAGCAGCGGTCACGGA
AAGTGTGGTGCAGGACCCTCGTATTGGCGTCAGAAGAACTGATGGAGACG
TGTAGTGCGGAGCTGGGTGGGTAGCAAGCGGTTGCCCTGCACGTCTTGAC
ACGGCGCACGCCTCGAGATTTTCTGCTACGTTGGGGGCAGTCGCTAGGTT
TGATCCCACAACACATCTCTCTAAGCCACAAGAGAGATGATCTGGGCGAT
CGCTTGGTGTATTCCTGTTGCGGTTGGAGTCGGGGGGGGTGGAGGGGAGT
CTCTTCGCCATCCCCCCCCCCCCCCCCCCCTCTCGCCTGTGTTGTAATTT
TGGCGATCGCTGCAGTCGGATGATGGCCACAAGGAGGCGAAACGGGAACT
AGTTAAGGCACCAAATAAGCCACAACGACCCCTCGGAAGTTTGGGGGCAC
CATATGGAAGCGCCCGAACGTTGGTGCTGTCACATTTGTTTGCGTTGAAG
GGCACGGTAGCTGTATGCTGCACCCTTTCCCTCTCCCCTGTCTCGTGCTT
TGCTGCCTTCGCCATGAGAAACATGTAGGGATTTTAGCATGTTCTCAGCC
CGGATCGTTTGAATGCTCTGATACGGCAAGGTTTCACACATTTGTCCCTC
CCTCCCTCTCCCCCCCCCGCCCCTCTCCCTCACTCCCTACTTCTCTCCCT
CCTTCCCTGCCTTCCACTTCCCTCCCCTGCCGTCGCCTGCTTCGGCCGCC
AGGCTCAGACGACGTATCGGTTGCGCGTATCGCGTTCCAGCGTGGGGTAT
GCCTTCGTCGCTCGGGGCGGCGGGAGGAGGCGGAGACGGTGCTCGGCGAG
TGCGTCAAGACCCTCGAGGCTAGCCTGGGGGCGGGGCACGAAGAAGTGGC
CGCGGCGAAAAGCATGTTGGATTCGTGCGCGGCGACCGAGTAGGGTGATC
ATCCCGGGAATTCCCGGAACTTTTGCGGCGAAAGGAATGAAAACGTGTGT
TGTGTTCGCTACTTGTTGGTATCAAGTTTTTTGTTTCATTTTCTCCCAAG
TATTTTTGTCCGAGTGCCATTTGGTGTTCAATTGTCTCTGTTCTGTTTTG
GTCGTATCCGCGTCTGTTTGTGCGTTGTGCTATCTACGGTTGACAGGTTC
GGACGTGGGTGGTACAACCTATTCGGCTGTAGATGCTGAGGCCGCCACAC
TGCCGGCAACCTGAAGAAGCACATGTGTCCCTGAGCTCAGTTTGTACCAG
TGTTGTTTGTAAACAGAAAAACATGTGTTTTTTTTGTGCTTGAGAATTAT
AACGTAACTTGTTTTCTTCTTGTGCCTGCTGTAGTGTGCTTACGAGTCGT
GTCTCTCTATGCGTTTTTTATTTAGGAGCCGTTGATTTGCGCTTGCGACC
CTCAAAAACTCGTATCGACATGTGTTGTTTCGCATCTACTTTTTGTAGGA
TAGCTCGATTTAGCTTCGGACTGTTGTAGTTGTGAGTGTGTCGTGCATGA
GCACCTGCCGCGTTACACTAACCGGCGCGCAAATGACAGATTACGTACGA
ACGTGTAGAGGCGCCTTTTCTTCGCGGCGGAGTCCCCGGGAAGGGATGGG
GGGGGGTGGATGAGCATAGCCGTTCCGGTAAGTGCCGGTAATTCTGTAAC
GAAAACAATTCATGGTCGGATGATAAATTGTTTGTACAATCTAGTGAGGG
TATGATGAGCTGCGCATCGAAAGCTCCATGTTTGATGCCGGCGTATATTT
GTATCTTGTTGTTGAGCTGTTCTTTGTCTGTTTTTATCGAGTGTTGTGTG
TACGTGCTCCTGGTAGTGGGTTTCTGATGGCGATTTTCGATAGCGGTATT
GTTTATTATTGGATAGTTGCCTCCTGCTTGAATCGCGTTGTTGTTGCCAT
GCCTGGGCGATCCCAAGAGCAAGCTAGGTGAGTACCTCTTTCTCTCTCTC
TCTCTCTCTCTCTCCTCCCCCTCTGTCGAAAGTTTAATTTTCTTTAGTGC
CACCTTCGATGGTATTGTGTTTCGGGAGCAACGAGCGTGAGGTTGCGGGG
AGGGGTATTTTGATGGATGGCCCTCTGTAGTTAAAGAGAGAGGGAGAAAT
AGAGAGAGAAGGATTGGAGAACCCGCATCTGGGCACCGTTGGGTATCATA
CAGAACGAGCACACGTTCGTCGTATTGTAGTCTAGTGCAAGGTCTATCAA
ATGACTAGTCTAGAGCAATTCACGATGCTTTTCTGTCACGGCGGGTGTGT
GCATCCGCACGTACGCAACAACTGTAAGAAGATTGGTATCATTACACGCG
GCCTGGTGCAGAGAGTGAAAAAGTTCACAAGCATTACAGAAATGTCACCA
TGGGTGGGAAAAGTGTTGCGTGTACTTGATGGTAAGAGCTTTTTTTTTCT
GTGCTCTTTCCGTACGATTGAAAACCTGGGCAATACACTTTTGCTGCCGC
TGTTACAGCAACATGGAGAGGAAAATAGGACTATGCTGTGATAGTTTATT
CTCATGTGTCGGAGAAGTCTTTCCGATTGATCGGTGTTCCTTGTTATCGT
AGCGTACGGCAAACGGTTTTGCCGCCTTTTTCTGAGGATTTGCGGTGGAA
TATTATGATCGATTGATGAGGCACAAGCACGCGTAGCTTTCTTTGTGATG
GTCTGGGATCCTCCGAAACGGAGGAACGCTTTGGTGCGCTACAGTATTCT
TGAAATGGGCTCTACAACTACTTTGAGCGACACAAGACAGCGGGGATTTG
GTTTTTGTGTCAAGTCTTTAGACTAATTTGCTCACTATCAAGCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6917:3768..6814-

>mRNA_Ecto-sp13_S_contig6917.17906.1 ID=mRNA_Ecto-sp13_S_contig6917.17906.1|Name=mRNA_Ecto-sp13_S_contig6917.17906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6917:3768..6814- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTAGTCTAGAGCAATTCACGATGCTTTTCTGTCACGGCGGGTGTGT
GCATCCGCACGTACGCAACAACTGTAAGAAGATTGGTATCATTACACGCG
GCCTGGTGCAGAGAGTGAAAAAGTTCACAAGCATTACAGAAATGTCACCA
TGGGTGGGAAAAGTGTTGCGTGTACTTGATGGTAAGAGCTTTTTTTTTCT
GTGCTCTTTCCGTACGATTGAAAACCTGGGCAATACACTTTTGCTGCCGC
TGTTACAGCAACATGGAGAGGAAAATAGGACTATGCTGTGA
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