prot_Ecto-sp13_S_contig6917.17905.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6917.17905.1
Unique Nameprot_Ecto-sp13_S_contig6917.17905.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length430
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6917.17905.1 vs. uniprot
Match: D8LJY4_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY4_ECTSI)

HSP 1 Score: 657 bits (1695), Expect = 1.570e-233
Identity = 376/411 (91.48%), Postives = 380/411 (92.46%), Query Frame = 0 
Query:   22 MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEAACCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWEDNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD-VNGGGNNPYTPMSPSATTTPTTSLASSFVKAALSLPHKPRASGGAGDGAAA--VQAELLALSPRTVTRGTEKKNGISATKSPALAKSSSLPGTEKAAXXXXXXXXXXXXGGGGSGCYGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXX---RGRGCSKGDGAGGWSLKSFFFGVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS 426
            MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEA+CCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWE+NRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD VN GGNNPY PMSPS       SLASSFVKAALSLPHKPR SGGAGDGAAA  VQAELLALSPRT TRGTEKK  +SATKSPALA+ SSLPGTEKAAXXXXXXXXXXXX    S  YGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXX   RGRG SKG  AGGWS KSFF GVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS
Sbjct:    1 MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEASCCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWENNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETDDVNRGGNNPYPPMSPSXXXXXXXSLASSFVKAALSLPHKPRTSGGAGDGAAAAAVQAELLALSPRTATRGTEKKKAMSATKSPALARVSSLPGTEKAAXXXXXXXXXXXXXXXXSDRYGSAAAVAQEDLLPLSPRMARGAEAAXXXXXXXXXXXARGRGYSKGGSAGGWSWKSFFCGVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGS 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6917.17905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJY4_ECTSI1.570e-23391.48C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainSMARTSM00239C2_3ccoord: 63..163
e-value: 2.0E-6
score: 37.3
IPR000008C2 domainPFAMPF00168C2coord: 64..153
e-value: 2.9E-10
score: 40.4
IPR000008C2 domainPROSITEPS50004C2coord: 49..148
score: 11.315
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 62..195
e-value: 5.7E-14
score: 54.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 376..399
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..375
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 400..430
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 65..188
NoneNo IPR availableTMHMMTMhelixcoord: 377..399

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6917contigEcto-sp13_S_contig6917:88..3047 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6917.17905.1mRNA_Ecto-sp13_S_contig6917.17905.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6917 88..3047 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6917.17905.1 ID=prot_Ecto-sp13_S_contig6917.17905.1|Name=mRNA_Ecto-sp13_S_contig6917.17905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
GSSNQQHQLLRCVCYLKLSILMPPTPHRTRVRPSPSTSKSPRRRGLAAEF
VDSDNDEAACCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTD
VVFDSVNPSWEDNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVA
LSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVG
RPALDETDVNGGGNNPYTPMSPSATTTPTTSLASSFVKAALSLPHKPRAS
GGAGDGAAAVQAELLALSPRTVTRGTEKKNGISATKSPALAKSSSLPGTE
KAAASSCSSSAGTHRGGGGSGCYGSAAAVAQEDLLPLSPRMARGAEAAAA
AAAAEAARGRGCSKGDGAGGWSLKSFFFGVVFSALLVLGGLWAVGVPLLS
GQLGFGLRVLEDGENGRQAVVLIHGSVSGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf