mRNA_Ecto-sp13_S_contig69133.17901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69133.17901.1
Unique NamemRNA_Ecto-sp13_S_contig69133.17901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: D8LEQ6_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.450e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEAMDSS 162
            A+LVLLEDVPAGEELTQSYVTREMGL+ERREALEDYGFFCTCPRCLEEEAM SS
Sbjct:  453 AQLVLLEDVPAGEELTQSYVTREMGLVERREALEDYGFFCTCPRCLEEEAMASS 506          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A6H5KDI3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.460e-20
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEAM 153
            A++VLLEDVPAGEELTQSYV R+MGL+ERR+ALEDYGF CTCPRC EEEA+
Sbjct:  487 ADVVLLEDVPAGEELTQSYVNRDMGLVERRDALEDYGFLCTCPRCSEEEAI 537          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: E1ZK66_CHLVA (SET domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZK66_CHLVA)

HSP 1 Score: 56.2 bits (134), Expect = 8.410e-8
Identity = 29/54 (53.70%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    4 ELVLLEDVPAGEELTQSYVTREMGLIERREAL-EDYGFFCTCPRCLEEEAMDSS 162
            E   L D+PAGEELTQSY      L +R++   EDYGF CTCPRC EE     S
Sbjct:  271 EFRALHDIPAGEELTQSYFPLPWPLADRQQRCQEDYGFQCTCPRCKEEATWSDS 324          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A7S0T5Z6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T5Z6_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 2.380e-7
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   16 LEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEA 150
            L D+PAGEELT SY+     L ER  AL  YGF C CP+CL E A
Sbjct:   88 LRDIPAGEELTLSYIDENDSLEERTGALASYGFTCGCPKCLLEVA 132          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A7J6HI71_CANSA (SET domain-containing protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HI71_CANSA)

HSP 1 Score: 54.7 bits (130), Expect = 2.950e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEE 147
            A ++ L+ +  GEE+T SYV  ++ L ER+ +L DYGF CTCP+CL EE
Sbjct:  406 ATILALKPICKGEEITISYVDEDLTLEERQASLADYGFRCTCPKCLAEE 454          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A6P3ZLJ5_ZIZJJ (histone-lysine N-methyltransferase ATXR2 n=4 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZLJ5_ZIZJJ)

HSP 1 Score: 54.7 bits (130), Expect = 2.950e-7
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEE 147
            A ++ L+ +  GEE+T SYV  E+   ER+  LEDYGF C CP+C+EEE
Sbjct:  430 ATIIALKPMCKGEEVTISYVDEELPFEERQALLEDYGFKCRCPKCMEEE 478          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: UPI001CFB722C (histone-lysine N-methyltransferase ATXR2 isoform X1 n=2 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB722C)

HSP 1 Score: 53.9 bits (128), Expect = 5.520e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEAM 153
            A ++ L  +  GEE+T SY+  ++   ER+  L DYGF C+CP+CLEEE +
Sbjct:  445 ATIIALRPISKGEEVTISYIDEDLPYEERQALLADYGFKCSCPKCLEEEPL 495          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A7S2WNM4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNM4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-6
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1
Query:    1 AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEAMDSS 162
            A++  L D+  GEEL  SY+     L ERR AL DYGF C+CP C  ++  + +
Sbjct:   48 AQVHALRDIEPGEELRFSYIDTSASLSERRLALSDYGFICSCPLCQSQQQSEGN 101          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: UPI002007F80A (SET domain-containing protein n=1 Tax=Daldinia caldariorum TaxID=326644 RepID=UPI002007F80A)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    4 ELVLLEDVPAGEELTQSYVTREM-GLIERREALEDYGFFCTCPRCLEEEAMDSS 162
            +LV ++D+PAG E+T +Y+  E   L  RRE L  +GF CTC RC EEE  D +
Sbjct:  172 QLVTIKDIPAGSEVTVTYLGLEKDNLQRRREVLRGWGFTCTCERCTEEELGDQN 225          
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Match: A0A2P6THG2_CHLSO (Histone-lysine N-methyltransferase ASHR2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THG2_CHLSO)

HSP 1 Score: 51.6 bits (122), Expect = 3.600e-6
Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 1
Query:    4 ELVLLEDVPAGEELTQSYVTREMGLIERREAL-EDYGFFCTCPRCLEEEAMDSS 162
            E   + D+PAGEE+ QSY      + ER+E   EDY F CTCPRC EE     S
Sbjct:  234 EFRAMHDIPAGEEVCQSYFPLPWSMRERQERCREDYAFCCTCPRCQEEATWSES 287          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69133.17901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEQ6_ECTSI1.450e-2594.44SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KDI3_9PHAE1.460e-2082.35SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
E1ZK66_CHLVA8.410e-853.70SET domain-containing protein n=1 Tax=Chlorella va... [more]
A0A7S0T5Z6_9CHLO2.380e-757.78Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7J6HI71_CANSA2.950e-751.02SET domain-containing protein n=4 Tax=Cannabis sat... [more]
A0A6P3ZLJ5_ZIZJJ2.950e-751.02histone-lysine N-methyltransferase ATXR2 n=4 Tax=Z... [more]
UPI001CFB722C5.520e-745.10histone-lysine N-methyltransferase ATXR2 isoform X... [more]
A0A7S2WNM4_9STRA1.080e-642.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI002007F80A1.430e-648.15SET domain-containing protein n=1 Tax=Daldinia cal... [more]
A0A2P6THG2_CHLSO3.600e-648.15Histone-lysine N-methyltransferase ASHR2 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69133contigEcto-sp13_S_contig69133:40..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score109.0
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog2880.D8LEQ6
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
Cds size165
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.9230287-CDS-Ecto-sp13_S_contig69133:39..2041681463949.9230287-CDS-Ecto-sp13_S_contig69133:39..204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69133 40..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69133.17901.1prot_Ecto-sp13_S_contig69133.17901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69133 40..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69133.17901.1

>prot_Ecto-sp13_S_contig69133.17901.1 ID=prot_Ecto-sp13_S_contig69133.17901.1|Name=mRNA_Ecto-sp13_S_contig69133.17901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
AELVLLEDVPAGEELTQSYVTREMGLIERREALEDYGFFCTCPRCLEEEA
MDSS*
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mRNA from alignment at Ecto-sp13_S_contig69133:40..204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69133.17901.1 ID=mRNA_Ecto-sp13_S_contig69133.17901.1|Name=mRNA_Ecto-sp13_S_contig69133.17901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69133:40..204+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAATTAGTGCTTTTGGAAGACGTGCCCGCCGGGGAGGAGCTGACTCA GAGCTACGTCACCAGAGAAATGGGTCTTATCGAGAGAAGAGAGGCGCTAG AGGACTACGGGTTCTTTTGTACGTGTCCCCGCTGCTTGGAAGAGGAAGCC ATGGATTCATCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69133:40..204+

>mRNA_Ecto-sp13_S_contig69133.17901.1 ID=mRNA_Ecto-sp13_S_contig69133.17901.1|Name=mRNA_Ecto-sp13_S_contig69133.17901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69133:40..204+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAATTAGTGCTTTTGGAAGACGTGCCCGCCGGGGAGGAGCTGACTCA
GAGCTACGTCACCAGAGAAATGGGTCTTATCGAGAGAAGAGAGGCGCTAG
AGGACTACGGGTTCTTTTGTACGTGTCCCCGCTGCTTGGAAGAGGAAGCC
ATGGATTCATCGTGA
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