mRNA_Ecto-sp13_S_contig101504.179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101504.179.1
Unique NamemRNA_Ecto-sp13_S_contig101504.179.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A6H5J9J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 7.890e-41
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            +ANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA+DGCKEKV
Sbjct:  560 RANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVAQDGCKEKV 633
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: W7TJD8_9STRA (Atp-dependent rna helicase ddx1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJD8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.210e-29
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            NL AFK+GDVRFLICTDVAARG+DI+ LP+VIN TLPD  ENYIHR+GRVGR DCLGLA+S+VA  G +EKV
Sbjct:  580 NLQAFKEGDVRFLICTDVAARGIDIQNLPFVINYTLPDAVENYIHRVGRVGRADCLGLAISLVAASGYQEKV 651
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S2WVU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 9.830e-29
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA 198
            NL AFK+GDVRFLICTDVAARG+DI+GLPYV+N+TLPDVPENYIHRIGRVGR D +GLAVS+VA
Sbjct:  303 NLAAFKEGDVRFLICTDVAARGIDIQGLPYVVNVTLPDVPENYIHRIGRVGRADRMGLAVSLVA 366
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A183T7I9_SCHSO (Helicase C-terminal domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183T7I9_SCHSO)

HSP 1 Score: 112 bits (279), Expect = 1.010e-28
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            +ANL  FK+GDV FLICTDVAARG+DI GLPYVIN+TLPD  ENY+HRIGRVGR + +GLA+S+VA   CKEKV
Sbjct:  107 KANLQKFKNGDVNFLICTDVAARGLDITGLPYVINVTLPDEKENYVHRIGRVGRAERMGLAISLVA--ACKEKV 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S0HCK1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HCK1_9CRYP)

HSP 1 Score: 108 bits (270), Expect = 5.240e-28
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:   10 LDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDG-----CKEKVQG 228
            + AFKDGDVRFLI TDVAARG+DI GLPYV+NMTLPDV  NY+HRIGRVGR D +GLA+S VA +      C++ V+G
Sbjct:    1 MQAFKDGDVRFLIATDVAARGIDISGLPYVVNMTLPDVAANYVHRIGRVGRADKMGLAISFVATEKERVWFCQKNVKG 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A0R3SKL4_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SKL4_HYMDI)

HSP 1 Score: 111 bits (278), Expect = 1.230e-27
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            +ANL  FKDG+V FLICTDVAARG+DI GLPYVIN+TLPD  +NY+HRIGRVGR + +GLA+S+VA   CKEKV
Sbjct:  292 KANLQRFKDGEVNFLICTDVAARGIDITGLPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT--CKEKV 363
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A482T3W9_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3W9_9ARCH)

HSP 1 Score: 108 bits (269), Expect = 2.320e-27
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            NL  FKDG+++FLICTDVAARG+D+  LPYVIN+TLPD P++Y+HR+GR GR D +GLA+SIVA D  KEKV
Sbjct:   51 NLQRFKDGEIKFLICTDVAARGIDVDSLPYVINVTLPDQPDDYVHRVGRAGRADRMGLAISIVAMDN-KEKV 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A7S0T1I6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T1I6_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 2.940e-27
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    7 NLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVA 198
            NL AFK+GDVRF+ICTDVAARG+DIKGLP+VINMTLPD PE+YIHRIGRVGR D +GLA+S+V+
Sbjct:  338 NLQAFKEGDVRFMICTDVAARGLDIKGLPFVINMTLPDRPEDYIHRIGRVGRADTMGLAISLVS 401
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A8J4TNC2_9TREM (ATP-dependent RNA helicase DDX1 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4TNC2_9TREM)

HSP 1 Score: 109 bits (272), Expect = 4.360e-27
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            +ANL  FK+GDVRFLICTDVAARG+DI GLPYVIN+TLPD  +NY+HRIGRVGR + +GLA+S+VA    KEKV
Sbjct:  136 KANLQKFKNGDVRFLICTDVAARGIDIAGLPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAT--VKEKV 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Match: A0A8J1XQR3_OWEFU (Ofus.G062670 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XQR3_OWEFU)

HSP 1 Score: 107 bits (268), Expect = 5.880e-27
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIGRVGRQDCLGLAVSIVARDGCKEKV 222
            + NL+ FK G+V+FLICTDVAARG+DI GLP+VIN+TLPD  +NY+HRIGRVGR + +GLA+S+VA+  CKEKV
Sbjct:   79 KGNLERFKRGEVKFLICTDVAARGIDITGLPFVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAQ--CKEKV 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101504.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9J1_9PHAE7.890e-4197.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TJD8_9STRA1.210e-2976.39Atp-dependent rna helicase ddx1 n=2 Tax=Monodopsid... [more]
A0A7S2WVU8_9STRA9.830e-2984.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A183T7I9_SCHSO1.010e-2872.97Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S0HCK1_9CRYP5.240e-2866.67Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0R3SKL4_HYMDI1.230e-2771.62Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]
A0A482T3W9_9ARCH2.320e-2768.06DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A7S0T1I6_9CHLO2.940e-2779.69Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A8J4TNC2_9TREM4.360e-2771.62ATP-dependent RNA helicase DDX1 n=1 Tax=Paragonimu... [more]
A0A8J1XQR3_OWEFU5.880e-2767.57Ofus.G062670 protein n=1 Tax=Owenia fusiformis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101504contigEcto-sp13_S_contig101504:154..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score113.2
Seed ortholog evalue5.6e-23
Seed eggNOG ortholog55529.EKX49574
Preferred nameDDX1
Model size246
KEGG koko:K13177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0001700,GO:0003006,GO:0003674,GO:0003676,GO:0003682,GO:0003712,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006417,GO:0006446,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008026,GO:0008033,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009790,GO:0009792,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010608,GO:0014070,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0033677,GO:0034248,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0035770,GO:0036464,GO:0042221,GO:0042254,GO:0042623,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051246,GO:0051252,GO:0051276,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070717,GO:0070727,GO:0071103,GO:0071704,GO:0071826,GO:0071840,GO:0071920,GO:0072669,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1901698,GO:1903506,GO:1903608,GO:1990904,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.DNA/RNA helicase activity
EggNOG OGsCOG0513@1,KOG0349@2759
EC3.6.4.13
Cds size246
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.127451-CDS-Ecto-sp13_S_contig101504:153..3991681462511.127451-CDS-Ecto-sp13_S_contig101504:153..399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101504 154..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101504.179.1prot_Ecto-sp13_S_contig101504.179.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101504 154..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101504.179.1

>prot_Ecto-sp13_S_contig101504.179.1 ID=prot_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
QANLDAFKDGDVRFLICTDVAARGVDIKGLPYVINMTLPDVPENYIHRIG
RVGRQDCLGLAVSIVARDGCKEKVQGVRNEP*
back to top

mRNA from alignment at Ecto-sp13_S_contig101504:154..399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101504.179.1 ID=mRNA_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101504:154..399+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGAACCTTGACGCCTTTAAGGACGGGGATGTCCGGTTCCTGATCTG
CACCGACGTTGCGGCAAGGGGCGTGGACATCAAGGGACTGCCGTACGTGA
TTAACATGACTCTCCCCGACGTGCCCGAGAACTACATCCACAGGATAGGC
CGCGTGGGGCGGCAGGACTGTCTCGGGCTGGCGGTGTCCATTGTGGCTCG
GGACGGCTGCAAGGAGAAGGTGCAGGGCGTGAGAAATGAACCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101504:154..399+

>mRNA_Ecto-sp13_S_contig101504.179.1 ID=mRNA_Ecto-sp13_S_contig101504.179.1|Name=mRNA_Ecto-sp13_S_contig101504.179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101504:154..399+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGAACCTTGACGCCTTTAAGGACGGGGATGTCCGGTTCCTGATCTG
CACCGACGTTGCGGCAAGGGGCGTGGACATCAAGGGACTGCCGTACGTGA
TTAACATGACTCTCCCCGACGTGCCCGAGAACTACATCCACAGGATAGGC
CGCGTGGGGCGGCAGGACTGTCTCGGGCTGGCGGTGTCCATTGTGGCTCG
GGACGGCTGCAAGGAGAAGGTGCAGGGCGTGAGAAATGAACCGTGA
back to top