mRNA_Ecto-sp13_S_contig69129.17899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69129.17899.1
Unique NamemRNA_Ecto-sp13_S_contig69129.17899.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69129.17899.1 vs. uniprot
Match: A0A6H5KKC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.980e-20
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 2 
Query:    2 LLKTVPMRTRKRDVLRKIIFGKSVPNKNRAASRANTKGGGGEVEDTGGSAVAWGGTPALPSG 187
            LLK VPMRTRKRD+LR I+FGKSVP KN AASRANTKGGG EVEDTGGSAVAWGGT ALPSG
Sbjct:  434 LLKAVPMRTRKRDMLRNILFGKSVP-KNSAASRANTKGGG-EVEDTGGSAVAWGGTHALPSG 493
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69129.17899.1 vs. uniprot
Match: D7FPD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.120e-20
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 2 
Query:    2 LLKTVPMRTRKRDVLRKIIFGKSVPNKNRAASRANTKGGGGEVEDTGGSAVAWGGTPALPSG 187
            LLKTVPMRTRKRDVLRKIIF K  P  N+AASRANTKGGGGEVE+ GGSAVA GGT ALP+G
Sbjct:  243 LLKTVPMRTRKRDVLRKIIFRKPGPKNNKAASRANTKGGGGEVENAGGSAVAGGGTQALPAG 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69129.17899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKC6_9PHAE1.980e-2087.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPD3_ECTSI3.120e-2082.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69129contigEcto-sp13_S_contig69129:48..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score83.2
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D7FPD3
Model size187
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.positive regulation of mitochondrial calcium ion concentration
EggNOG OGsKOG2643@1,KOG2643@2759
Cds size168
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.7273393-CDS-Ecto-sp13_S_contig69129:47..1331681463949.7273393-CDS-Ecto-sp13_S_contig69129:47..133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69129 48..133 -
1681463949.7402115-CDS-Ecto-sp13_S_contig69129:565..6471681463949.7402115-CDS-Ecto-sp13_S_contig69129:565..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69129 566..647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.7505999-UTR-Ecto-sp13_S_contig69129:647..6661681463949.7505999-UTR-Ecto-sp13_S_contig69129:647..666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69129 648..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69129.17899.1prot_Ecto-sp13_S_contig69129.17899.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69129 48..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69129.17899.1

>prot_Ecto-sp13_S_contig69129.17899.1 ID=prot_Ecto-sp13_S_contig69129.17899.1|Name=mRNA_Ecto-sp13_S_contig69129.17899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MRTRKRDVLRKIIFGKSVPNKNRAASRANTKGGGGEVEDTGGSAVAWGGT
PALPSG
back to top

mRNA from alignment at Ecto-sp13_S_contig69129:48..666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69129.17899.1 ID=mRNA_Ecto-sp13_S_contig69129.17899.1|Name=mRNA_Ecto-sp13_S_contig69129.17899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69129:48..666- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCTCAAAACCGTCCCCATGCGGACAAGAAAACGGGACGTGCTCCGAA
AGATAATATTCGGGAAGTCTGTGCCGAATAAGAACAGAGCAGCCTCCAGA
GGTAAGTTGGGTGTGTGGAGGGGAGCAAGGGGGTGTAAGCTGGCTACAAC
CATGTCATGTCAAGTCGTCGAATAGTGGTATTGGCGTTTCACAGCAACCG
TGTGAGGCGCGTTCTCATGCGCCGCGGTGTAGCCCGCGCATGTTACCGTT
TATTTGCTCATTTGGTGGTTCACACACCCAACCAGAGGGCTCCGGCGAGG
GGAACCTTCTTTTCCTGGTGTAGAGAGGCAGAAATGTACCAAACAGCACA
CTTGTGTGTGGGCGGTCTGGGTGTCGACATGGTTTCGGATCACCGGAAAG
ACAGACAACAAGCATGTCTGTTTCTCGATGTCTGAAAACCGCGCTCTCTT
TAGGCAAGTCGCCTACATTCGCTGTCTGCCACCGTGCGCGTTTTCACCAT
GTACCATCGACCCTGTACCAATCAATATCGCAGCGAATACCAAGGGTGGC
GGCGGTGAGGTTGAGGACACAGGAGGCTCCGCGGTTGCGTGGGGGGGGAC
CCCGGCGTTGCCCTCCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69129:48..666-

>mRNA_Ecto-sp13_S_contig69129.17899.1 ID=mRNA_Ecto-sp13_S_contig69129.17899.1|Name=mRNA_Ecto-sp13_S_contig69129.17899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69129:48..666- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGACAAGAAAACGGGACGTGCTCCGAAAGATAATATTCGGGAAGTC
TGTGCCGAATAAGAACAGAGCAGCCTCCAGAGCGAATACCAAGGGTGGCG
GCGGTGAGGTTGAGGACACAGGAGGCTCCGCGGTTGCGTGGGGGGGGACC
CCGGCGTTGCCCTCCGGG
back to top