mRNA_Ecto-sp13_S_contig6911.17897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6911.17897.1
Unique NamemRNA_Ecto-sp13_S_contig6911.17897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6911.17897.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 1.610e-83
Identity = 121/134 (90.30%), Postives = 125/134 (93.28%), Query Frame = 2 
Query:  152 SPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPACRNFSAGTCAWTGLLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYIDRCLNAEPCIVLKEDGVPVNVRLAGEDD---VGKRCRDCKRARP 544
            SPEQVPADRELQYLCPRTGCNTNL LKENIRKDRADYPACRNF+AGTCAWTGLLIKYPGKV WLCASEFEVGEVVWA+TIPDVERPAC+I+ CLNAE CIVLK DGVPVNVRLAGEDD   VGKRCRDCKRA P
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADP 185
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BLAST of mRNA_Ecto-sp13_S_contig6911.17897.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.390e-65
Identity = 104/132 (78.79%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  149 GSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPACRNFSAGTCAWTG--LLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYIDRCLNAEPCIVLKEDGVPVNVRLAGEDDVGKRCRDCKRA 538
            GSPEQVPADRELQ+LCP TGCNTNL LKENI KDRADY  C    AGT A     LLIKYPGKV WLCASEFEVGEVVWAYT PDVERPACYI+ CLN + CI+LKE+G PVNVRLAGEDDV KRC DCKRA
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRA 181
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BLAST of mRNA_Ecto-sp13_S_contig6911.17897.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 4.340e-59
Identity = 90/116 (77.59%), Postives = 94/116 (81.03%), Query Frame = 2 
Query:  161 QVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPACRNFSAGTCAWTGLLIKYPGKVSWLCASEFEVGEVVWAYTIPDVERPACYIDRCLNAEPCIVLKEDGVPVNVRLAGEDDV 508
            +  ADRE QYLCP TGCNTNL       KDRADYPACR FS GTC WTGLLIKYPG V WLCASEFEVGEVVWAYTIPDVERPACYI  CLN +  I+LKE+GVPVN RLAGEDDV
Sbjct:   99 RAKADREPQYLCPGTGCNTNL------HKDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
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BLAST of mRNA_Ecto-sp13_S_contig6911.17897.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.370e-16
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  149 GSPEQVPADRELQYLCPRTGCNTNLSLKENIRKDRADYPACRNFS 283
            GS EQVPADRE QYLCP TGCNTNL LKENI K RADYPACR  +
Sbjct:   83 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6911.17897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE1.610e-8390.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI1.390e-6578.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI4.340e-5977.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI6.370e-1680.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6911contigEcto-sp13_S_contig6911:5430..7720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size698
Hectar predicted targeting categoryother localisation
Exons4
Cds size282
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.609162-UTR-Ecto-sp13_S_contig6911:5429..55271681463949.609162-UTR-Ecto-sp13_S_contig6911:5429..5527Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6911 5430..5527 -
1681463949.6202996-UTR-Ecto-sp13_S_contig6911:5831..59241681463949.6202996-UTR-Ecto-sp13_S_contig6911:5831..5924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6911 5832..5924 -
1681463949.6314669-UTR-Ecto-sp13_S_contig6911:6704..68141681463949.6314669-UTR-Ecto-sp13_S_contig6911:6704..6814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6911 6705..6814 -
1681463949.6421301-UTR-Ecto-sp13_S_contig6911:7325..74381681463949.6421301-UTR-Ecto-sp13_S_contig6911:7325..7438Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6911 7326..7438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.6532245-CDS-Ecto-sp13_S_contig6911:7438..77201681463949.6532245-CDS-Ecto-sp13_S_contig6911:7438..7720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6911 7439..7720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6911.17897.1prot_Ecto-sp13_S_contig6911.17897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6911 7439..7720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6911.17897.1

>prot_Ecto-sp13_S_contig6911.17897.1 ID=prot_Ecto-sp13_S_contig6911.17897.1|Name=mRNA_Ecto-sp13_S_contig6911.17897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
ASPKPPSLQPRYQPIALHRWILSAGCFYGCSYPGARARSRLICECWLICR
LARASPGRPRAAIPLPTHRLQHQPLLKGKYPQRQGRLPRLQEL*
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mRNA from alignment at Ecto-sp13_S_contig6911:5430..7720-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6911.17897.1 ID=mRNA_Ecto-sp13_S_contig6911.17897.1|Name=mRNA_Ecto-sp13_S_contig6911.17897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6911:5430..7720- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGCCAAAACCGCCAAGCCTCCAGCCCCGCTACCAACCCATCGCCCT
CCACCGCTGGATCCTTTCCGCCGGCTGCTTCTACGGCTGCTCCTACCCCG
GCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTAATCTGCCGG
CTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCCAC
GCACCGGTTGCAACACCAACCTCTCCTTAAAGGAAAATATCCGCAAAGAC
AGGGCCGATTACCCCGCCTGCAGGAACTTTAGCGCCGGCACCTGCGCGTG
GACCGGCCTTTTGATCAAGTACCCTGGAAAGGTCTCCTGGCTCTGCGCCT
CCGAGTTCGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGGTGAG
AGCTTTCTTATATCTACAGCAGTAGTATAATGAATGATCTTCCTTCACGG
ATGTAATCTGCAGCGGCAGGCTTGGAGTTCGCGCGTTGATGTTGTGTTTG
TTCGTATGTATGAACGCGATTCATATTTTTTGCCGACGCACATTATGTCC
ATACAAAGTTGTTTACGCCACAAAACATTAGGCGCTCTTCATTATTTTTC
GGCGCTCTTCGTGATGGGGTATGAATCATATGCCCACGTCGTAGAACTAA
CACGATTCATTCCTGATTTCTGTCACAAGAAAACCACACAACCACCAAGC
AACCTTGAATTTTTTTTTGTGCTGAGCTGTGCAAGGTTGTCGCACAAACT
TTGCCTCTCCCCGCGCTGTTGAATCACTCAGAAAATGAACAGATCTACTT
CAACAAAACGCTGCAACAAAAAACGTTTTTCACTGACGAGTTTTCCGCCC
CCGTGTGTGTATGTATGTATATATGTATGTGCCCTTCTCTTTTTGTGATC
AAACAGACGTGGAACGCCCGGCGTGCTATATTGACAGGTGCCTCAACGCC
GAGCCCTGCATCGTCCTCAAGGAGGACGGCGTCCCCGTCAACGTTAGGCT
GGCCGGCGAGGACGACGTGAGTCCTTTATTTCTGTTTCACAAAACTATCT
TTCCCGTCCCTACCCCTTCCTCCTGCCAGCCGAACACAACGCAACATCAA
ACTCTTATTTATGTTCTCGCCCGTCAAGATGCGCATTGTACGTGTTTGGC
ATGTGTCTGATGTCCTTTCGTGTATATATCTATATATATATGCGCACGCA
CATGCTCGGTAAAATGTGATCCTCCTTTTTGCTACGCAAAGACAAACGCT
GACAACGCAAGACACACACATTTCTTCGTTCCAGCACCGTTTTTTTTTGT
GCTCCCGCCTGCTGCCGTGGAATTGCGCACATGTTCGGTTATATTAAGTG
TTCGCCCTGTCCTTGCTGCTGCGCAAAGATATAATGATGACGCAAGACAC
ATGTTTGTAGTTCCTGCCGATAATATGCGCACTGCCATGAACACAACACC
ATAGCTTTCCTGCCCGAACATATCCGCACGCACATGCTCGGTGCAACAAG
ACGGTTTTTTTTCGTGTTGGACACCATTATTTTCAGCGTGAAGATGCGCA
CATACACGTTCGTTATGTATAGTATGTGTTCCTGTCTTTGCTGCTGCGCA
AACACTCAAGCTGGCGCAGAACCTACTTATTTTTGCATTCCTAGTGTTTG
TGCACACTTTTTTTTTCGTGTTCCACGCCATTTTTTTCGGTCCTCTTTGT
CCTGTTCTTGACACTTTATTTGCTGCGCAACGACACAATGGTGACGCAGT
ACGCATCTTTTTTCCCTTACACATTTTTCTCGTGCAATTCATACAGGTTG
GCAAGCGCTGCCGTGACTGCAAACGTGCCCGACCATACTGGACACGGACC
AGTTAATCGCCAAGTCCACCCAGCCCTTGCACGTGGGCTGTGCCATGAAA
CACCGTCGGGAGCTCGAGGACAAGATCAACGAAAGCTGCTCGCCTAGTCA
GAACGCAACCCATCGACCACGTCAACGACAACCTCCACAACCCCATCCCC
GATTCTGGACGAGACACCTTCTTCGACTCCATTTTTGCTGGAATAAATTC
AGGGAACATTCAAATAGCTGGTCAAACTCAAAAAACCTACCAAAATGTTC
CAGAGTACCTCCAACTCATGTCAGTTCCAACTGCCTATGTAACCCACGTC
GAGATTGCAGCTGCCCGACAGTTATACAACCATAACATAAGAGTTCCCCT
TGTTGGCCAACCCTCTTCACCTCCTCCGTCCCATGATGCATGCGATGTTT
TGTACGGGGGCGAGCACTACCGAACTTTGCAATTTAATCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6911:5430..7720-

>mRNA_Ecto-sp13_S_contig6911.17897.1 ID=mRNA_Ecto-sp13_S_contig6911.17897.1|Name=mRNA_Ecto-sp13_S_contig6911.17897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6911:5430..7720- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGCCAAAACCGCCAAGCCTCCAGCCCCGCTACCAACCCATCGCCCT
CCACCGCTGGATCCTTTCCGCCGGCTGCTTCTACGGCTGCTCCTACCCCG
GCGCCCGCGCGCGGAGCCGGCTCATCTGCGAGTGCTGGCTAATCTGCCGG
CTCGCCCGAGCAAGTCCCGGCCGACCGCGAGCTGCAATACCTCTGCCCAC
GCACCGGTTGCAACACCAACCTCTCCTTAAAGGAAAATATCCGCAAAGAC
AGGGCCGATTACCCCGCCTGCAGGAACTTTAG
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