mRNA_Ecto-sp13_S_contig6908.17894.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6908.17894.1
Unique NamemRNA_Ecto-sp13_S_contig6908.17894.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6908.17894.1 vs. uniprot
Match: A0A6H5KE90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE90_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.710e-39
Identity = 82/105 (78.10%), Postives = 84/105 (80.00%), Query Frame = -2 
Query:    3 SHTGSDEAEAAAAMHALANXXXXXXXXXKDSSGGKNGVADKKTAHLGRLGVFVTDERMLSPAEAAKIRKGNLGRASLSGGXXXXDSETASKRGANGGVHATARPA 317
            S TGSDEAEAAAAMHALAN         KD  GGK GV+D+KTAHLG LGVFVTDERMLSPAEAAKIRKGNLGRA LSGG    D ETASKRG NGGVHATARPA
Sbjct:   71 SQTGSDEAEAAAAMHALANSSSST----KDGGGGKKGVSDRKTAHLGSLGVFVTDERMLSPAEAAKIRKGNLGRALLSGGG---DGETASKRGTNGGVHATARPA 168
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BLAST of mRNA_Ecto-sp13_S_contig6908.17894.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.090e-15
Identity = 40/45 (88.89%), Postives = 40/45 (88.89%), Query Frame = -2 
Query:   81 KNGVADKKTAHLGRLGVFVTDERMLSPAEAAKIRKGNLGRASLSG 215
            K GV DKKTAHLG LGVFV DERMLSPAEAAKIRKGNLGRA LSG
Sbjct:  106 KKGVGDKKTAHLGSLGVFVADERMLSPAEAAKIRKGNLGRALLSG 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6908.17894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE90_9PHAE5.710e-3978.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU3_ECTSI5.090e-1588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6908contigEcto-sp13_S_contig6908:5999..6320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463949.2193265-CDS-Ecto-sp13_S_contig6908:5998..63191681463949.2193265-CDS-Ecto-sp13_S_contig6908:5998..6319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6908 5999..6319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6908.17894.1prot_Ecto-sp13_S_contig6908.17894.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6908 5999..6319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6908.17894.1

>prot_Ecto-sp13_S_contig6908.17894.1 ID=prot_Ecto-sp13_S_contig6908.17894.1|Name=mRNA_Ecto-sp13_S_contig6908.17894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
PAGLAVACTPPFAPRFEAVSLSPPPPPPLSEALPRLPFLILAASAGDSIL
SSVTKTPRRPRWAVFLSATPFLPPLLSFVEEEEEEEELANACMAAAASAS
SLPVWLP
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mRNA from alignment at Ecto-sp13_S_contig6908:5999..6320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6908.17894.1 ID=mRNA_Ecto-sp13_S_contig6908.17894.1|Name=mRNA_Ecto-sp13_S_contig6908.17894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6908:5999..6320+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCCGGTCTCGCCGTGGCGTGCACCCCCCCGTTTGCACCGCGCTTTGA
GGCCGTTTCGCTGTCGCCGCCGCCGCCGCCGCCGCTGAGCGAAGCCCTAC
CGAGGTTGCCCTTCCTAATCTTGGCCGCTTCGGCCGGCGATAGCATCCTC
TCGTCGGTCACGAAAACGCCGAGACGACCGAGGTGGGCCGTCTTCTTGTC
AGCAACGCCATTCTTGCCGCCACTACTGTCTTTCGTGGAAGAGGAAGAGG
AAGAGGAAGAGTTGGCCAACGCGTGCATGGCCGCCGCCGCCTCCGCTTCG
TCGCTGCCGGTGTGGCTTCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6908:5999..6320+

>mRNA_Ecto-sp13_S_contig6908.17894.1 ID=mRNA_Ecto-sp13_S_contig6908.17894.1|Name=mRNA_Ecto-sp13_S_contig6908.17894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6908:5999..6320+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCCGGTCTCGCCGTGGCGTGCACCCCCCCGTTTGCACCGCGCTTTGA
GGCCGTTTCGCTGTCGCCGCCGCCGCCGCCGCCGCTGAGCGAAGCCCTAC
CGAGGTTGCCCTTCCTAATCTTGGCCGCTTCGGCCGGCGATAGCATCCTC
TCGTCGGTCACGAAAACGCCGAGACGACCGAGGTGGGCCGTCTTCTTGTC
AGCAACGCCATTCTTGCCGCCACTACTGTCTTTCGTGGAAGAGGAAGAGG
AAGAGGAAGAGTTGGCCAACGCGTGCATGGCCGCCGCCGCCTCCGCTTCG
TCGCTGCCGGTGTGGCTTCCG
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