mRNA_Ecto-sp13_S_contig6903.17889.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6903.17889.1
Unique NamemRNA_Ecto-sp13_S_contig6903.17889.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6903.17889.1 vs. uniprot
Match: D7FRX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.680e-10
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 MPDVIKPGPPNXXXXXXXXXXXXQENGAVTMDLMGSGRDFPLQ 129
            MPDV+KPGPP+            QENGAVTMDLMGSGRDFPLQ
Sbjct:    1 MPDVVKPGPPSNGGDADGGGEDEQENGAVTMDLMGSGRDFPLQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6903.17889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRX9_ECTSI4.680e-1067.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6903contigEcto-sp13_S_contig6903:1532..5967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size475
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003550.1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.8223433-UTR-Ecto-sp13_S_contig6903:1531..17061681463948.8223433-UTR-Ecto-sp13_S_contig6903:1531..1706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6903 1532..1706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.8359506-CDS-Ecto-sp13_S_contig6903:1706..18771681463948.8359506-CDS-Ecto-sp13_S_contig6903:1706..1877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6903 1707..1877 -
1681463948.8475506-CDS-Ecto-sp13_S_contig6903:5838..59671681463948.8475506-CDS-Ecto-sp13_S_contig6903:5838..5967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6903 5839..5967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6903.17889.1prot_Ecto-sp13_S_contig6903.17889.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6903 1707..5967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6903.17889.1

>prot_Ecto-sp13_S_contig6903.17889.1 ID=prot_Ecto-sp13_S_contig6903.17889.1|Name=mRNA_Ecto-sp13_S_contig6903.17889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MPDVIKPGPPNNGGGADGGGEDEQENGAVTMDLMGSGRDFPLQEDCAPIV
QLPAPRSRATRRKLIGGTCLIDGVAQAGMIYPKRCRGLCLLGLSARGDN*
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mRNA from alignment at Ecto-sp13_S_contig6903:1532..5967-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6903.17889.1 ID=mRNA_Ecto-sp13_S_contig6903.17889.1|Name=mRNA_Ecto-sp13_S_contig6903.17889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4436bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6903:1532..5967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGACGTCATCAAGCCCGGGCCGCCTAACAATGGTGGGGGTGCTGA
CGGTGGGGGTGAGGACGAGCAGGAGAATGGAGCTGTGACAATGGATTTGA
TGGGATCTGGACGCGACTTTCCTCTTCAGGTACGTGAGTGAGCTGGAAAG
CTTACTCGGACCAGCTGTCTGCTGGTGTTCTGTCGTCCTGACAGCAGTAT
GTTGAGGCTCTTGGATGTGTGGTCTACTCAACAGCAGTTCCTCGTGCGTA
CAAGTACGAACGTACGAACTTCAGTCTGCGTAGGATACTTAACCTGCACC
TAACGCGTCTTTGGTGAAACAATAGAGCAAGCGGAAGTTCGCGTGTTCAC
CTGGAAGGTTGTGAACAAAAACCTACACTGTTCACTGCTGTGCGATTTAT
CTTGACTTAACATACAGGAGACTGCATAAGATAACACACCCCGGTGATAA
CATGTTGGGCTTTGAAAATGTTATCACCGGGTGCGGTATCCTGTGGGAGG
TGTGGTCGTGTGGTATCTTATGTAGCCCGGGTGATAAAGTGCAGCTCGCT
TGGGCCCTTAAGTGCAATAGCACGTCCGAACAGGCACAGGGTGTGTTTGG
AGTGTGATAAATGAGGGGGTATGGGGGTATGCTAACACGTCCGAATACAC
ACAGGGTGTGTTTTGGGTGTAATAATGAGGGTGTGTGTTAAAAAGGTGTC
CACACGTGTTCGCGCCTATTGAAAAATTGGCATATTTTTTTTTTATGCAG
ACATTACAAATCCTGGAATCATATCCGGAAGCAGTCTCTCCGCGAGGTAC
ATTTAGTTATTTGCTACAACTCTCGCTGTGGTGCTGATCCCAAATCGTTC
ACATCCTCCATGCGTTGCCCATATGTAAAGGCACACACACACCAATTTTC
GTCAGGATTGGTTCACCCCAAGTGGGTAACCAAAGGCATCTGGGTACGTT
GCGTGCTTCCATGGCTTGGATTACCATGATATTTGTTGGAGGTAGGCTCA
TGATCGTTCCGGAGGCCTGTCTGCTGACTACTGGAGTTAAGAGATGAATT
TGGGCCGACTTTTGCAAGCCCATTGCGATCGCTTTAGTGCAGATCCCAAA
TTGTGCACATCATGCATTCGTTCTATGGCCTTTCATCTCTACTATGGCGC
GGAGTTTTGGCCGAATTGGGGCTCCGAAGCGGGTAACCATCTTGGATGAA
AGTTGCTTCCCGAGAGCTGAAAACGTTGCGTCCAGCAGCAGATGACAGCT
TCAATCCAGATGTGATCGTGAGACATTGCTCCGGCCCAAAGCAAAATCAA
AGGGTAAAAACAGCTTTCCGATGGAGGGTATGACTTGCTTGAGGTGCCCA
CCTACTTTGGGGGAATGACAAGGTCTGTGTGAGGAGCACGAGGTGGTGAA
AGAACTGGGCTCAGCCATGTCCAATCTGGGGAGGGGATGAAACAACATTG
ACCCCGCTGAAACCGGCGGCGTGATTTTTTGTCTGTACTTTGTTTTCAAT
TTCCTACAGGCGCGAACACGTGTGTGTCATAACACTTCTTGTAGAGTTGA
ACCGCTGCCGCCGCACACTTGGTTGGTATTGCGGGGGTGTGATAGCAATG
CCTGTACGAACACTTCATTACTTCTGGTTCTGCGGAGTGTGGTAAAACAA
AGGAGCTCAACGGAGGTGACGACACTCCTGAGCACATGACTTGGTGGCCA
CAGAGTGTGCCATCCGTCCTGCCCCCTCACACAAAAAAAGTAGGCTCCTG
CATACCTTGCTATTGGGTACGACCAAAAGAGAGCTACGCAGATGTTGTGT
GTGAGAGATACCCACATACCCACGCGGCAGATGTTCTATCACCCCGGTGA
TAGACGGAGGAGCCCGCGGCCTAACCTCAAGGGGTGTGTTATCTTATGGA
ACCCCAGTGATAAATCGATGGGTTGTCAGAAACGCCGAAAATTATCACCG
GGGTGTCGTATTCTGTGGTGGGGATGGTTTCTTATGTGGGTGTGTTATCT
TGTGTCGTCTACACGTACTCCGGAGTACACAATGTGCTTGTAAGTAGTTG
TAGATGAGAAGCGCGGCATGGTCGGCTTACGGACGAGGAGAGAGAGCGGA
TGCTTGGCCACGGAAATGCAAGCAGACGGATGCCCTGACAGGGCAAAAGT
TCCATCCATCACCACGAACAAGCCTTTCTGTAGGTGGTGGCTATTCTGTC
TGGCAAGTGTCCAACGAAATCAGTACATGAATTACACAAGATAAAGGCTA
CGCAGGCTGGCAAATGTACCGGGAGAAAGGTTTTAGACTTTAATTTCGCG
GGCGAAGCCCGCTAGTTATACATGTGTGAAACCAATTATCTGCGGGCCGC
ACGCTTTCAAAATGTTGGGCATCTCCGAATAAATGAACGAATGGGTATAT
CAAAACAGAGGTGTCGTCACCGCGGCAGCAAAGCAAGACAACCCCGTGCA
GATATGTATGTTGCTAATGCGGGTCATCGTACAAACGAGATGATGGTGGG
GCGTTCGTTCCAAAGAACCCTAGATGGAGTCAAGAGAGCGAAGAAGGAAA
GGTAATAATCAACAGATAGATTGGATGCAGAGATGCCACAGCATCATCAT
CATCACGTTACTTGAAGTTGTCTAGCGAGGACGGGTGTGTAGACGTGTAG
ACGATGTACAAATATACGCGCATCCCTGGGCGTGGGTTACTGCTGTAGCT
CGACATAAATATGCGCGTGTGCGTGTGTGGGTGATCTCCCTCCTCGCTGT
TTCCAAGCTTTTTTAGAAAGTAAACCCAACCTCTCAGAAATACTACCCGT
TCGAGAAATAACCTCAGTCGAAAATGTTGGGTTGAAGTCTTTTCAGTAAG
TGGATTGAAACCGACTGGAAACTGGGCTTGTTTTGAGCATGTGTAAGCCT
ATACACTGAGTTATATTAATCAGTGAAACCAATTGGCGCTAAGAACGAAA
GTAGCTGTCTAGTTGAATACATTCTTAACACAGCTCCTGTAGTGCGCTAC
TGGGTCGACGACAAAACTATCGGGGAGAAGCTCTCCCGTTATGTCGTATT
ATTGAATGTGGCCTTAACAGGGAACGCGGCGCAGTGTCGTTTGACAACTT
GCTGGTTTTAGGAAGTACTGTTTTGTTTAGACTTGTTGTTGACGAGTATG
CTCCCGCCGCACCTCTGTGAATGTCTCGGGTCTTGTCGTGTTCAAACGTT
CGCGCTCGCTGCTTGTGTCGCTTGTCCCGTGTCACCGAGCTCTCTCTCTC
TCTGTTCGTTTTTTTTTTATGTCGTCATAGCTGCGGGCACCTTTTATCTC
TCTCGCTATTTGAATGTAGCTACAACATAGCAGCTTTTTTTTTTGGTGCT
GCTGCTGCCGGCTCGTTATCGACACTGAAGTGTGTGTTGACGTTGCGAAA
CTCTGTACACACATAGACCCGAGGTCTATGCTGGGTCTATCCCGCTGTGG
GCATTTGGTATGCGCCAGTTGCCGCTCCCAGGCTCCTGGCTGATGTGCGT
GGGTCTGTGAGCTGGTTGTTGGAATGCGGTGCCCACAAGAAAGCGGAGTA
ATTGCCAATATTACTCGAAAATAGACAAGACGCCAAGTAGGCGCCAAGTT
AAATGAAGACAGCTGATTGGCCGACGCCAAGTTAAATTTGTCCCGGTGGC
TTTTTTTGCTGCCGCCAGGCTCCTCACAAAAAGAGGGGATGGCGTTTCGC
AAAACTAAACGAAACAACTTGAAGTTTAGTGAGGGATTCGCACTAAAGCA
CTAAGCTTTATACGGGGGGGCGAAAAAAGACCGCACAAGCATAGTAACGT
TTTGCGCCCGACAAGTTGAAATGAGAACAACCGGTACAGCTAGTTCGCGT
TCGATCCGTTTGTTGATCGGGCATACACACATAGAGAACGGCGGCGGGGC
GTCAAAGGACCCAGACGATCCACCATTGTGGCCAAATTTCGGGCTGCTGG
GTACAACTTCATAGAGCGCAACTCACACACCATAACGCTACGATCTGGCA
ATTTCGAGCAGTGTGGTCGCTTGGGGCGTGGTATAGCTGTCGGTAACGGA
AGCACACTTTGCTGTGCTGTTTCAATAAAAATCTTGGCAGGAAGATTGTG
CTCCAATTGTACAACTGCCAGCACCTCGATCTCGCGCTACAAGGCGTAAA
CTGATCGGCGGAACATGTTTGATCGATGGGGTTGCTCAAGCTGGTATGAT
TTATCCAAAAAGATGTAGAGGTTTGTGTCTCCTGGGGCTAAGCGCCAGAG
GGGATAATTGAGATTTTGCAGCAGTCTGCGGGGGCACCGCCCGAGATTTT
TTATCAAGCAGTTTGACTTGTGAGAAAAAAAACAGTTGGGAAAAAAACAC
CATCTTGGAGCCCCGGGGCACTGGGGACGACGAAGATCGTTGCGCATCCT
TAAGCGTGACATGATCGATGACAGACGTAGGTCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6903:1532..5967-

>mRNA_Ecto-sp13_S_contig6903.17889.1 ID=mRNA_Ecto-sp13_S_contig6903.17889.1|Name=mRNA_Ecto-sp13_S_contig6903.17889.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6903:1532..5967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGACGTCATCAAGCCCGGGCCGCCTAACAATGGTGGGGGTGCTGA
CGGTGGGGGTGAGGACGAGCAGGAGAATGGAGCTGTGACAATGGATTTGA
TGGGATCTGGACGCGACTTTCCTCTTCAGGAAGATTGTGCTCCAATTGTA
CAACTGCCAGCACCTCGATCTCGCGCTACAAGGCGTAAACTGATCGGCGG
AACATGTTTGATCGATGGGGTTGCTCAAGCTGGTATGATTTATCCAAAAA
GATGTAGAGGTTTGTGTCTCCTGGGGCTAAGCGCCAGAGGGGATAATTGA
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