mRNA_Ecto-sp13_S_contig690.17883.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig690.17883.1
Unique NamemRNA_Ecto-sp13_S_contig690.17883.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig690.17883.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 925 bits (2391), Expect = 0.000e+0
Identity = 508/533 (95.31%), Postives = 516/533 (96.81%), Query Frame = 1 
Query:    1 MLRRGIFRVAVYAQSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSD--DVTPAKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREVEAGTVRAGVAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRGVAADTPDATRVAFGATTYGKDPEAAAALSEEEAAEVEALRARTKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQASDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALQMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPDATRVAFRASVYGKDGQAAAALSEQDAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAPAAPIHHDRSMFDSDLAEGAGAALESTAIKRHVEAATPALTRLSFFGSTYGDDDPGSNKADHARTLAEKQKKGAKLARVGAGVRSSKVHNTEKAMADDEYSQAGSE 1593
            MLRRGIFRVAVYA+SQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSD  DVTP KTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKRE EAGT R G AAAPVHDNRNMFDSSLSQQAEDGKESGSIKR VAADTPDATRVAFGAT YGKDPEAAAALS +EA EVEALRAR KGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQA DAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEAL+MRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKR+VSGDTPDATRVAFRASVYGKDGQAAAALSEQ+AAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAA AAPIHHDRSMFDSDLAEGAGAA ESTAIKRHVE ATPALTRLSFFGSTYGDDDPGSNKADHA+ LAEKQKKGAKLARVGAGV+S+KVHNTEKAMADDEYSQAGSE
Sbjct:    1 MLRRGIFRVAVYARSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDSDDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQAGSE 533
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BLAST of mRNA_Ecto-sp13_S_contig690.17883.1 vs. uniprot
Match: A0A835Z577_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z577_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.090e-30
Identity = 129/396 (32.58%), Postives = 192/396 (48.48%), Query Frame = 1 
Query:  145 VTPAKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREVEAGTVRAGVAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRGVAADTPDATRVAFGATTYGKDPEAAAALSEEEAAEVEALRA-RTKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQASDAIKRDVKTDTPDATRVAFRASAYGKD--PQTAAALSEQEAAEVEALQMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPDATRVAFRASVYGKDGQAAAALSEQDAAEVDELRVRAHGAGASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAALAERVGAGTPAAPAAPIHHDRSMFDSDL 1323
             TPA T+LAF+ S YG      G  T +    A  LK+  +        A + VH  R++FDS+ +QQ++D K    + + V   TPD TR++   + YGK+     A+  +  A ++     R+  + V+      +H RR +FDS +TQ A  T+A   + ++VKTDTPDATR++   S YGKD  P  A A+ E     +   +  A   G+   + +H  R+MFDS L   +   +  + I R V  DTPD TR++   S YGKD   A A         D +     G  A++   + +H  R+MFDS +TQ A   +  + + R V  +TP+ TRL    SDYG D +  D   K +               AAP + +H  R  FD+DL
Sbjct:   27 ATPAATRLAFAESAYGH-----GASTHDHDVEA--LKKSYKKSATPD--ATSKVHSRRSLFDSAQTQQSDDSKTFIDVAKEVKTGTPDITRLSVFDSDYGKE-----AMPSDAQARIQGRSGKRSMAERVSA-----VHSRRALFDSVMTQ-ADDTKAFKDVLKEVKTDTPDATRLSVFNSDYGKDAMPANAGAMIE---GRIGGSRQSADAAGSGGVSRIHSRRAMFDSVLVH-SDDGKAFEDIVRVVKTDTPDVTRLSVFDSDYGKDAMPANA---------DAMIEGLSGKRAAAPRVSAIHSRRAMFDSVMTQ-ADDGKAFEHVVREVKTDTPDITRLSVFDSDYGADSQPHDAHTKIEGRSGKRE------ASAAPVSKVHCSRRAFDTDL 382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig690.17883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI1_ECTSI0.000e+095.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z577_9STRA3.090e-3032.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig690contigEcto-sp13_S_contig690:8118..10914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2424
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Cds size1596
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.40381-UTR-Ecto-sp13_S_contig690:8117..89451681463948.40381-UTR-Ecto-sp13_S_contig690:8117..8945Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig690 8118..8945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.41555-CDS-Ecto-sp13_S_contig690:8945..91181681463948.41555-CDS-Ecto-sp13_S_contig690:8945..9118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig690 8946..9118 -
1681463948.4292827-CDS-Ecto-sp13_S_contig690:9491..109141681463948.4292827-CDS-Ecto-sp13_S_contig690:9491..10914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig690 9492..10914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig690.17883.1prot_Ecto-sp13_S_contig690.17883.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig690 8946..10914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig690.17883.1

>prot_Ecto-sp13_S_contig690.17883.1 ID=prot_Ecto-sp13_S_contig690.17883.1|Name=mRNA_Ecto-sp13_S_contig690.17883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=532bp
MLRRGIFRVAVYAQSQKTCAAGVKNLPAAAAGTRAWLSATSGGDSSDDVT
PAKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREVEAGTVRAGVAAA
PVHDNRNMFDSSLSQQAEDGKESGSIKRGVAADTPDATRVAFGATTYGKD
PEAAAALSEEEAAEVEALRARTKGDGVAGAAAAPLHDRRNMFDSDLTQGA
GSTQASDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEA
LQMRAQGRGAAAAAPVHDSRSMFDSDLTQGAGSTQGSDSIKRDVSGDTPD
ATRVAFRASVYGKDGQAAAALSEQDAAEVDELRVRAHGAGASSADAAPVH
DSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRS
VDNSEKKKAEIAALAERVGAGTPAAPAAPIHHDRSMFDSDLAEGAGAALE
STAIKRHVEAATPALTRLSFFGSTYGDDDPGSNKADHARTLAEKQKKGAK
LARVGAGVRSSKVHNTEKAMADDEYSQAGSE*
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mRNA from alignment at Ecto-sp13_S_contig690:8118..10914-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig690.17883.1 ID=mRNA_Ecto-sp13_S_contig690.17883.1|Name=mRNA_Ecto-sp13_S_contig690.17883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig690:8118..10914- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGGAGAGGAATTTTCAGGGTGGCTGTTTACGCCCAGTCTCAGAA
AACATGCGCCGCCGGGGTCAAAAATCTCCCCGCGGCAGCCGCGGGGACGA
GGGCTTGGCTCTCCGCAACATCAGGCGGAGACAGCAGTGACGACGTAACC
CCGGCCAAGACGAAACTCGCGTTTTCCTCCAGCGTGTACGGCAAGGATCC
GGCTTCTGGCGGAGAACCAACCGCGGAGGAAGCGGCCGCTGCCGCACAAC
TTAAGCGGGAGGTGGAGGCGGGCACCGTAAGGGCGGGAGTAGCGGCCGCA
CCCGTTCACGACAACAGAAACATGTTCGACTCTTCGCTGTCCCAGCAGGC
TGAGGACGGAAAAGAGTCCGGGAGTATCAAGCGCGGCGTTGCGGCCGACA
CCCCGGACGCCACACGAGTGGCATTCGGCGCTACCACCTACGGCAAAGAC
CCCGAGGCGGCCGCTGCGCTTTCAGAGGAGGAGGCTGCGGAGGTTGAAGC
GTTGCGGGCGAGGACCAAGGGCGATGGTGTCGCCGGTGCAGCAGCGGCCC
CACTTCACGACAGACGCAACATGTTCGATTCCGACTTGACGCAGGGCGCA
GGGAGCACGCAAGCGTCCGATGCCATCAAACGCGACGTCAAAACGGATAC
GCCCGATGCCACACGAGTAGCCTTCCGCGCGAGTGCTTACGGGAAAGACC
CTCAAACGGCCGCCGCGCTCTCTGAGCAGGAGGCCGCCGAGGTAGAAGCG
CTGCAGATGAGGGCCCAGGGCCGGGGTGCTGCAGCCGCGGCTCCGGTCCA
CGACTCCAGGAGCATGTTCGACTCCGATCTCACGCAAGGCGCCGGGAGCA
CGCAAGGGTCTGACTCGATCAAGCGCGACGTTTCAGGCGACACCCCGGAC
GCTACACGAGTAGCGTTCCGCGCGAGCGTTTACGGAAAGGACGGCCAAGC
GGCCGCTGCGCTTTCGGAGCAGGATGCCGCCGAGGTGGACGAGTTGCGGG
TGAGGGCACACGGTGCCGGCGCCTCTTCCGCTGATGCCGCACCTGTGCAT
GATTCTAGGAGCATGTTTGACTCCGATCTCACGCAGGGAGCTGGGGCCAT
GCAGGGTTCGGACTCGATCAAGCGCCACGTTGCGGCCAACACGCCGGAAG
CGACGCGGTTGGTCTTTGCGGGGTCCGACTACGGGAAGGACCCGCGCTCC
GTGGACAACTCGGAGAAGAAGAAGGCGGAGATCGCGGCGCTCGCGGAGAG
AGTGGGGGCGGGCACCCCCGCCGCTCCGGCGGCGCCCATCCACCACGATA
GATCGATGTTTGACTCGGACCTTGCGGAAGGCGCAGGTGCAGCACTGGAG
TCGACGGCGATCAAGCGCCACGTTGAGGCGGCCACGCCGGCATTGACTCG
TCTCAGTTTCTTCGGAAGTACCTGTGAGTAAAAAGACCCGTTTATTTTCA
AACGGGTCTAATCTTCTGTCTAAATGGTCAAAGCACGGTCACCGTGCTTT
TCATCGCCAACTAAGTGTGGCAGCACACGGAGCTCTGGAATCTCATTTGC
AGTTGGTGTGATGGCGCACTCAAGCCGCCTCATGTGTTCGAACTGCTTCA
GGCACAGCAGTTGTTCTTCTGCCAAAGTCCCCCGCTTGCATTGTTTTGTA
GTTGTTCTGCCGCCTCTCGGGGCTACCCGAGGTTGGCACCTACCCAAACA
ATGTTTGAACGCCACCCCGTTATGCGGTAGTACCCCCCAACTTCCAACGA
CCTTTTCTTGATGCGATGGGTGATGCTATGGGTGACCAAACCTCAGATGG
CGATGACGATCCTGGCTCCAACAAAGCGGATCACGCTCGAACATTGGCGG
AGAAGCAGAAGAAGGGGGCCAAGCTAGCGAGGGTAGGAGCAGGCGTCCGC
AGCTCGAAGGTCCACAACACGGAGAAGGCGATGGCCGATGACGAGTATTC
CCAAGCAGGATCGGAGTGACTCGCACGAATTCCGCCACTTCTCTCTTTCA
GCCAGACAGCACCATTTGCGAGAAGTGCGATATGTTCCGCGTGTAGAGCT
GGCGACGGCATATGTATAATGTCTCATGAAGCAGCACCGTTGAACGTTTC
TGCCATAGATGTAGGGATGAGCCTCGGGACGCGATGTGGGGAATGTTGGT
ATCAAGAATGACAAGTTAGCGTCTGTTCGCAATGTACGTGTTTGGCTTCG
GGTGTTCAAGCTTGTTCGACAGCCTTTTTTAGAGGAATAAAGGATGGTCA
CAAGGGACAAATGTGGATGCCTTGTACATGGAAATGGGACGGTACAGGAA
AAGGGGTTGGTGCACTGATTGTAGTGAAACTATGAACGCGCCTCTCATAC
TGCAGACGGGACGCAGAAAGTTGCACCAGGGCAGGGTGAGTGTGAGAGGA
ATGACCGCACAGGACGACGGGGACGTTCTTTCATGTCAATTTGGGGGAAC
TTAGACTTCAACGATCCAGAATATCTATCTGTCGGAGCTTGCGTTCACCC
GTGGTGTCTGTGAAACTGCGAAGAGCTTCATTCAGGTTCCCTCCAGAAAA
CGCAAGATGACACACACATTGCATCAAAGTCCAGCTTTGAACGCATTTTC
GACATCTCGTCGTGGAGGCCATAATGACTTCTCGGCCTCGATGACGTGGC
AGAACCTTCAGGATCCCAAGGTTGTGTTAGCTTTTGGGGGGCGGACACAT
TCTCCCCGTTGATATTTGGACGAGAAAATGACCCAGAAAAGTGGGGGGCG
GTGCCACAGGTGGTCCGCCTGCTCAAGTCAGCAAAAACCATGTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig690:8118..10914-

>mRNA_Ecto-sp13_S_contig690.17883.1 ID=mRNA_Ecto-sp13_S_contig690.17883.1|Name=mRNA_Ecto-sp13_S_contig690.17883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig690:8118..10914- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGGAGAGGAATTTTCAGGGTGGCTGTTTACGCCCAGTCTCAGAA
AACATGCGCCGCCGGGGTCAAAAATCTCCCCGCGGCAGCCGCGGGGACGA
GGGCTTGGCTCTCCGCAACATCAGGCGGAGACAGCAGTGACGACGTAACC
CCGGCCAAGACGAAACTCGCGTTTTCCTCCAGCGTGTACGGCAAGGATCC
GGCTTCTGGCGGAGAACCAACCGCGGAGGAAGCGGCCGCTGCCGCACAAC
TTAAGCGGGAGGTGGAGGCGGGCACCGTAAGGGCGGGAGTAGCGGCCGCA
CCCGTTCACGACAACAGAAACATGTTCGACTCTTCGCTGTCCCAGCAGGC
TGAGGACGGAAAAGAGTCCGGGAGTATCAAGCGCGGCGTTGCGGCCGACA
CCCCGGACGCCACACGAGTGGCATTCGGCGCTACCACCTACGGCAAAGAC
CCCGAGGCGGCCGCTGCGCTTTCAGAGGAGGAGGCTGCGGAGGTTGAAGC
GTTGCGGGCGAGGACCAAGGGCGATGGTGTCGCCGGTGCAGCAGCGGCCC
CACTTCACGACAGACGCAACATGTTCGATTCCGACTTGACGCAGGGCGCA
GGGAGCACGCAAGCGTCCGATGCCATCAAACGCGACGTCAAAACGGATAC
GCCCGATGCCACACGAGTAGCCTTCCGCGCGAGTGCTTACGGGAAAGACC
CTCAAACGGCCGCCGCGCTCTCTGAGCAGGAGGCCGCCGAGGTAGAAGCG
CTGCAGATGAGGGCCCAGGGCCGGGGTGCTGCAGCCGCGGCTCCGGTCCA
CGACTCCAGGAGCATGTTCGACTCCGATCTCACGCAAGGCGCCGGGAGCA
CGCAAGGGTCTGACTCGATCAAGCGCGACGTTTCAGGCGACACCCCGGAC
GCTACACGAGTAGCGTTCCGCGCGAGCGTTTACGGAAAGGACGGCCAAGC
GGCCGCTGCGCTTTCGGAGCAGGATGCCGCCGAGGTGGACGAGTTGCGGG
TGAGGGCACACGGTGCCGGCGCCTCTTCCGCTGATGCCGCACCTGTGCAT
GATTCTAGGAGCATGTTTGACTCCGATCTCACGCAGGGAGCTGGGGCCAT
GCAGGGTTCGGACTCGATCAAGCGCCACGTTGCGGCCAACACGCCGGAAG
CGACGCGGTTGGTCTTTGCGGGGTCCGACTACGGGAAGGACCCGCGCTCC
GTGGACAACTCGGAGAAGAAGAAGGCGGAGATCGCGGCGCTCGCGGAGAG
AGTGGGGGCGGGCACCCCCGCCGCTCCGGCGGCGCCCATCCACCACGATA
GATCGATGTTTGACTCGGACCTTGCGGAAGGCGCAGGTGCAGCACTGGAG
TCGACGGCGATCAAGCGCCACGTTGAGGCGGCCACGCCGGCATTGACTCG
TCTCAGTTTCTTCGGAAGTACCTATGGCGATGACGATCCTGGCTCCAACA
AAGCGGATCACGCTCGAACATTGGCGGAGAAGCAGAAGAAGGGGGCCAAG
CTAGCGAGGGTAGGAGCAGGCGTCCGCAGCTCGAAGGTCCACAACACGGA
GAAGGCGATGGCCGATGACGAGTATTCCCAAGCAGGATCGGAGTGA
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