mRNA_Ecto-sp13_S_contig69.17876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69.17876.1
Unique NamemRNA_Ecto-sp13_S_contig69.17876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69.17876.1 vs. uniprot
Match: D7FKJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKJ2_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 1.160e-109
Identity = 182/207 (87.92%), Postives = 190/207 (91.79%), Query Frame = 1 
Query:    1 ADWPKSPGPEKDRLSTPPRADHAAERDAKEAERHCGLSLGAETANASTAATRESPRALERXXXXXXRKLLGGGGSGAQAVEDVASIWSALRDIARGTAPGRLLVKDFLPMLTEACSVVVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEMQQDDRIVIRDPARRQPMAGRLAVATTLSQHADSGCWSGIGMDAPMLEGCNLLRDG 621
            ADWPKSPGPEKDRL TPPRADHAAERDAKEAERHC LS GAETANAS AATRESP+ LER       KLLGGGG+GA+AVEDVASIWSALRD +RGTAPGRLLVKDFLPMLTEACSV+VQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEM+QDDRIVIRDPARRQP+AGR  VATTLSQHADSGCWSGIG DAPM+E CNLLRDG
Sbjct: 1301 ADWPKSPGPEKDRLGTPPRADHAAERDAKEAERHCDLSPGAETANASPAATRESPKTLER-------KLLGGGGAGAEAVEDVASIWSALRDFSRGTAPGRLLVKDFLPMLTEACSVIVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEMRQDDRIVIRDPARRQPVAGRSVVATTLSQHADSGCWSGIGKDAPMVESCNLLRDG 1500
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BLAST of mRNA_Ecto-sp13_S_contig69.17876.1 vs. uniprot
Match: A0A6H5KQU0_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU0_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.990e-97
Identity = 172/209 (82.30%), Postives = 181/209 (86.60%), Query Frame = 1 
Query:    1 ADWPKSPGPEKDRLSTPPRADHAAERDAKEAERHC-GLSLGAETANASTAATRESPRALERXXXXXXRKLLG-GGGSGAQAVEDVASIWSALRDIARGTAPGRLLVKDFLPMLTEACSVVVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEMQQDDRIVIRDPARRQPMAGRLAVATTLSQHADSGCWSGIGMDAPMLEGCNLLRDG 621
            ADWPKSP PEKDRL TPPRADHAAERDA EAER C  LS GAE A AS AATRESP+A ER        LLG GGG+GA+AVEDVASIWSALR+ +RGTAPGRLLVKDFLPMLTEACSVVVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEM+Q DRIVIRDPARRQP+AG  AVATTL QHAD+GCWSGIG  APM+E CNLLRDG
Sbjct: 1845 ADWPKSPAPEKDRLGTPPRADHAAERDANEAERPCCDLSPGAEAAKASPAATRESPKASER-------NLLGAGGGAGAEAVEDVASIWSALRNFSRGTAPGRLLVKDFLPMLTEACSVVVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRTEMRQHDRIVIRDPARRQPLAGGSAVATTLGQHADAGCWSGIGKAAPMVESCNLLRDG 2046
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69.17876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKJ2_ECTSI1.160e-10987.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQU0_9PHAE1.990e-9782.30HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69contigEcto-sp13_S_contig69:13925..14545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score359.8
Seed ortholog evalue8.7e-97
Seed eggNOG ortholog2880.D7FKJ2
Model size622
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2242@1,KOG2242@2759
EC2.3.2.26
Cds size621
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.7234232-CDS-Ecto-sp13_S_contig69:13924..145451681463947.7234232-CDS-Ecto-sp13_S_contig69:13924..14545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 13925..14545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69.17876.1prot_Ecto-sp13_S_contig69.17876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69 13925..14545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69.17876.1

>prot_Ecto-sp13_S_contig69.17876.1 ID=prot_Ecto-sp13_S_contig69.17876.1|Name=mRNA_Ecto-sp13_S_contig69.17876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
ADWPKSPGPEKDRLSTPPRADHAAERDAKEAERHCGLSLGAETANASTAA
TRESPRALERTPRALERKLLGGGGSGAQAVEDVASIWSALRDIARGTAPG
RLLVKDFLPMLTEACSVVVQSAHPFDRLAQRRVVLVPGAVGVQVRFDHRT
EMQQDDRIVIRDPARRQPMAGRLAVATTLSQHADSGCWSGIGMDAPMLEG
CNLLRDG
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mRNA from alignment at Ecto-sp13_S_contig69:13925..14545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69.17876.1 ID=mRNA_Ecto-sp13_S_contig69.17876.1|Name=mRNA_Ecto-sp13_S_contig69.17876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:13925..14545+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACTGGCCCAAGAGTCCAGGGCCTGAGAAAGACAGACTCAGCACACC
TCCTCGGGCAGACCATGCTGCTGAGCGGGATGCCAAGGAGGCGGAGAGGC
ACTGTGGTCTTTCACTGGGAGCCGAAACTGCTAACGCTTCAACTGCTGCT
ACTCGGGAGTCACCAAGGGCTTTGGAAAGGACACCAAGGGCTTTGGAAAG
GAAACTTTTGGGCGGTGGTGGTTCAGGAGCGCAGGCCGTTGAGGACGTGG
CCTCAATCTGGTCAGCGCTGCGCGATATTGCTCGGGGTACGGCTCCAGGG
CGTCTGCTGGTGAAGGATTTCCTACCGATGTTGACCGAGGCCTGCTCGGT
GGTAGTCCAGAGCGCCCATCCCTTCGACCGGCTGGCGCAACGCCGCGTCG
TCCTGGTTCCAGGCGCGGTAGGGGTACAGGTTCGGTTCGACCACCGCACG
GAAATGCAACAGGACGACCGAATCGTCATCCGAGATCCAGCGCGTCGCCA
GCCAATGGCGGGAAGATTGGCGGTTGCGACAACGCTCAGCCAACACGCCG
ACTCGGGCTGCTGGTCGGGGATCGGAATGGACGCGCCGATGCTCGAGGGT
TGCAACCTGCTGCGCGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69:13925..14545+

>mRNA_Ecto-sp13_S_contig69.17876.1 ID=mRNA_Ecto-sp13_S_contig69.17876.1|Name=mRNA_Ecto-sp13_S_contig69.17876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:13925..14545+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACTGGCCCAAGAGTCCAGGGCCTGAGAAAGACAGACTCAGCACACC
TCCTCGGGCAGACCATGCTGCTGAGCGGGATGCCAAGGAGGCGGAGAGGC
ACTGTGGTCTTTCACTGGGAGCCGAAACTGCTAACGCTTCAACTGCTGCT
ACTCGGGAGTCACCAAGGGCTTTGGAAAGGACACCAAGGGCTTTGGAAAG
GAAACTTTTGGGCGGTGGTGGTTCAGGAGCGCAGGCCGTTGAGGACGTGG
CCTCAATCTGGTCAGCGCTGCGCGATATTGCTCGGGGTACGGCTCCAGGG
CGTCTGCTGGTGAAGGATTTCCTACCGATGTTGACCGAGGCCTGCTCGGT
GGTAGTCCAGAGCGCCCATCCCTTCGACCGGCTGGCGCAACGCCGCGTCG
TCCTGGTTCCAGGCGCGGTAGGGGTACAGGTTCGGTTCGACCACCGCACG
GAAATGCAACAGGACGACCGAATCGTCATCCGAGATCCAGCGCGTCGCCA
GCCAATGGCGGGAAGATTGGCGGTTGCGACAACGCTCAGCCAACACGCCG
ACTCGGGCTGCTGGTCGGGGATCGGAATGGACGCGCCGATGCTCGAGGGT
TGCAACCTGCTGCGCGACGGG
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