mRNA_Ecto-sp13_S_contig69.17873.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69.17873.1
Unique NamemRNA_Ecto-sp13_S_contig69.17873.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A6H5L1V5_9PHAE (BTP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V5_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 2.720e-143
Identity = 214/226 (94.69%), Postives = 218/226 (96.46%), Query Frame = 1 
Query:    1 MPPRRAYRGRCQVACSTMTNSKDEGEVDSAEFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRYENAASSGSGSAAPAAXXXXXXRAAGGGRQELPKRWDQPFHHAVPPFPMPRKRAAPWDDAEDGEEGATEGPRSRPPHIPAFMPPLPPSTSRGASAGSDRSLAEV 678
            M P RAY GRCQVACSTMTNSKDEGEVDSA+FARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRY+NAASSGSGSAAPAA XXXXXRAAGGGRQELPKRWDQPFHHAVPPFPMPRKRAAPWD  E+GEE ATEGPRSRPPHIPAFMPPLPPST RGASAGSDRSLAE+
Sbjct:    1 MSPPRAYLGRCQVACSTMTNSKDEGEVDSAQFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDFAFSEDGYSNRYDNAASSGSGSAAPAANXXXXXRAAGGGRQELPKRWDQPFHHAVPPFPMPRKRAAPWDHGEEGEEAATEGPRSRPPHIPAFMPPLPPSTKRGASAGSDRSLAEI 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A5B7BZ13_DAVIN (Putative transcription initiation factor TFIID subunit 8 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BZ13_DAVIN)

HSP 1 Score: 57.0 bits (136), Expect = 7.130e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   55 TNSKDEGEVDSAEFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQM 300
            T +  E ++D  EF   + + AVA +C ++GF A  + AL+ LTD+  RY++T+AK    +   +GRT+ N+ D++   +++
Sbjct:    1 TLTSQEPKLDPPEFLFAIRRIAVAQICQSVGFKACQSSALETLTDITARYLQTLAKYAAASAAASGRTQSNLIDIVFALEEL 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A6A4L2F3_9ERIC (BTP domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4L2F3_9ERIC)

HSP 1 Score: 56.6 bits (135), Expect = 2.110e-5
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   58 NSKDEGEVDSAEFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQM 300
            N + + +  S +FAR ++K AVA VC ++GF      AL+ L+DV  RY+  + K     +  AGR E N+ D++QG + +
Sbjct:   49 NERSKTKNQSDDFARAISKIAVAQVCESVGFQIFQQSALNTLSDVAVRYIRDIGKTANNYSNLAGRAESNVFDIIQGLEDL 129
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: UPI001CB97E06 (transcription initiation factor TFIID subunit 8-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB97E06)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-5
Identity = 27/91 (29.67%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   49 TMTNSKDEGEVDSAEFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWT 321
            T+++        S++F   + K AV  +C + G+ A    AL+ LT++  RY++++AK  + +    GRTE N+ DV++GF+ +   + +T
Sbjct:   10 TLSSQSQLNLFQSSDFHTAVAKIAVTQICKSAGYAAAQTTALETLTNITVRYLQSIAKSAVISAVSTGRTECNLYDVIRGFEDLHYDVGFT 100
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A3P8WEG8_CYNSE (TATA-box binding protein associated factor 3 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WEG8_CYNSE)

HSP 1 Score: 55.8 bits (133), Expect = 4.910e-5
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   94 FARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDF 336
            +AR L + +VA +C A+G+ A    A D L+DV+QRY++ MA+     +   GRT+P + D+ Q F+ +   LS  EL D+
Sbjct:    5 YARSLLRVSVAQICQALGWDAVQLTACDLLSDVLQRYIQQMARACHRYSELYGRTDPVMDDISQAFRLLGVSLS--ELEDY 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A8B7XL27_ACAPL (transcription initiation factor TFIID subunit 3-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XL27_ACAPL)

HSP 1 Score: 55.8 bits (133), Expect = 5.000e-5
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   91 EFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTE 324
            E+ R L K AVA +C  +G+ A      D LTDV+QRY+E +A+ +     + GRT+PN+ DV   F  M+  L+  E
Sbjct:    4 EYCRSLLKVAVAQLCQGLGWHAIHTTPCDLLTDVLQRYLEHLARHSHRYAEQYGRTDPNLDDVGLAFSHMQVRLNELE 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A8C4R002_EPTBU (BTP domain-containing protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R002_EPTBU)

HSP 1 Score: 55.5 bits (132), Expect = 6.480e-5
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   94 FARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDF 336
            ++R + + A A +C ++G+ A    A+D LTDV+QRY+E +A+         GRT P++ D  Q FQ M   L   EL DF
Sbjct:    5 YSRAVLRVAAAQICQSLGWDAVQVSAVDILTDVLQRYIEQLARCCHRYGELYGRTNPDVEDAGQAFQLMGVNL--VELEDF 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A3Q3JAR3_MONAL (TATA-box binding protein associated factor 3 n=2 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JAR3_MONAL)

HSP 1 Score: 55.5 bits (132), Expect = 6.540e-5
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   94 FARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDF 336
            +AR L + +VA +C A+G+ A    A D L+DV+QRYV+ +A+     +   GRT+P + DV Q F+ +   LS  EL D+
Sbjct:    5 YARSLLRVSVAQICQALGWDAVQVTACDLLSDVLQRYVQQLARVCHRYSELYGRTDPVLDDVSQAFRLLGVSLS--ELEDY 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: A0A553QX38_9TELE (BTP domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QX38_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 8.060e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   94 FARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTELRDF 336
            FAR + + AVA +C A+G+ A    A D L+DV++RYV+ +A+     +   GRT+P + DV Q F  +   +S  EL D+
Sbjct:    5 FARSVLRVAVAQMCQAVGWDAVQLSACDLLSDVLERYVQQLARSCHRYSELYGRTDPVLSDVDQAFGLLGVSIS--ELEDY 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Match: UPI0014553324 (transcription initiation factor TFIID subunit 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553324)

HSP 1 Score: 55.1 bits (131), Expect = 8.870e-5
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   91 EFARILTKQAVAHVCVAIGFTATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQMRTPLSWTE 324
            E+ R L K AVA +C  +G+ A      D LTDV+QRY+E +A+ +     + GRT+PN+ DV   F  M   L+  E
Sbjct:    4 EYCRSLLKVAVAQLCQGLGWHAVHTTPCDLLTDVLQRYLEHLARHSHRYAEQYGRTDPNLDDVGLTFSHMHVRLNELE 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69.17873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L1V5_9PHAE2.720e-14394.69BTP domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A5B7BZ13_DAVIN7.130e-632.93Putative transcription initiation factor TFIID sub... [more]
A0A6A4L2F3_9ERIC2.110e-535.80BTP domain-containing protein (Fragment) n=1 Tax=R... [more]
UPI001CB97E062.240e-529.67transcription initiation factor TFIID subunit 8-li... [more]
A0A3P8WEG8_CYNSE4.910e-538.27TATA-box binding protein associated factor 3 n=1 T... [more]
A0A8B7XL27_ACAPL5.000e-539.74transcription initiation factor TFIID subunit 3-li... [more]
A0A8C4R002_EPTBU6.480e-538.27BTP domain-containing protein n=1 Tax=Eptatretus b... [more]
A0A3Q3JAR3_MONAL6.540e-539.51TATA-box binding protein associated factor 3 n=2 T... [more]
A0A553QX38_9TELE8.060e-538.27BTP domain-containing protein n=1 Tax=Danionella t... [more]
UPI00145533248.870e-539.74transcription initiation factor TFIID subunit 3-li... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69contigEcto-sp13_S_contig69:4651..9351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score72.8
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog3694.POPTR_0004s11520.1
Model size888
KEGG koko:K14649
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Transcription initiation factor TFIID subunit
EggNOG OGs37K2F@33090,3G9QF@35493,4JMIM@91835,KOG2389@1,KOG2389@2759
Ec32 ortholog descriptionBromodomain transcription factor
Ec32 orthologEc-12_008490.1
Cds size888
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69.17873.1prot_Ecto-sp13_S_contig69.17873.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69 4651..9351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.477848-CDS-Ecto-sp13_S_contig69:4650..47671681463947.477848-CDS-Ecto-sp13_S_contig69:4650..4767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 4651..4767 +
1681463947.5412006-CDS-Ecto-sp13_S_contig69:6143..62181681463947.5412006-CDS-Ecto-sp13_S_contig69:6143..6218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 6144..6218 +
1681463947.5599425-CDS-Ecto-sp13_S_contig69:7188..72961681463947.5599425-CDS-Ecto-sp13_S_contig69:7188..7296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 7189..7296 +
1681463947.5723417-CDS-Ecto-sp13_S_contig69:7868..81421681463947.5723417-CDS-Ecto-sp13_S_contig69:7868..8142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 7869..8142 +
1681463947.6043782-CDS-Ecto-sp13_S_contig69:8899..90041681463947.6043782-CDS-Ecto-sp13_S_contig69:8899..9004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 8900..9004 +
1681463947.6169205-CDS-Ecto-sp13_S_contig69:9142..93511681463947.6169205-CDS-Ecto-sp13_S_contig69:9142..9351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 9143..9351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69.17873.1

>prot_Ecto-sp13_S_contig69.17873.1 ID=prot_Ecto-sp13_S_contig69.17873.1|Name=mRNA_Ecto-sp13_S_contig69.17873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=296bp
MPPRRAYRGRCQVACSTMTNSKDEGEVDSAEFARILTKQAVAHVCVAIGF
TATSAGALDCLTDVVQRYVETMAKRTMENTYRAGRTEPNIPDVLQGFQQM
RTPLSWTELRDFAFSEDGYSNRYENAASSGSGSAAPAANGSGGARAAGGG
RQELPKRWDQPFHHAVPPFPMPRKRAAPWDDAEDGEEGATEGPRSRPPHI
PAFMPPLPPSTSRGASAGSDRSLAEVDPTGEIKAAASRRDGSKKSRGSRG
CCWSSGRGKYLRRLRRRRRAVSIRLFRARGRSFQREIWGHQQNYYQ
back to top

mRNA from alignment at Ecto-sp13_S_contig69:4651..9351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69.17873.1 ID=mRNA_Ecto-sp13_S_contig69.17873.1|Name=mRNA_Ecto-sp13_S_contig69.17873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:4651..9351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCTCGACGAGCTTATCGAGGTCGATGCCAGGTCGCGTGCTCGAC
CATGACGAATTCCAAGGACGAGGGGGAGGTGGACAGCGCGGAGTTCGCGA
GAATTCTCACCAAGCAGGTAGATTTCGGGGTCCCATGGTTGCGCGCCGGA
ACCGTCTTTGTCGAGTGCACGATACGGTCGGCAAAGTTAGAAAGTCCAGC
TGGGGGTGTGGCACGGGTCCAAGCGTTGAGGGCGGCAGACGGGCACACCT
TGCGATAAGCAGGCAGGTGGCCCACGCCACGTGTCAGCAGCGAGCGAAAT
TCCGGCTCCGACCGCCAAACTTAAGCACCGCATCGGTGGAAAGGCCAAGG
TAGCCCTCATTTTTGCGTAGCACGCTCTGAGCGAAACGCTTTTGAAGGAG
CCTTCCATTCCTGCCGCGGACCCTCTGATGCAATGATGTGTATGGAGAGG
TAACAACATTGCGCCAACCTGGCTACTCCTTCCGTTAGCACGGCTCTTGG
GCACCATGCATGATATGGGAAAATGCTTTGCATAGGTTTGGGTTTGGAGA
GAGGTGCCGACGCTGTTGCCCTACTCGTTCGCGACGTCCCCTTTGTGGTT
CCATCAATGGATCGATCGGATTTGAACTTTTCCTCTCACGAACATCTTGT
GTTTAATATACTGCTGTGTCGTTTTGATGGGCGGATACTCCCAAGTACTA
TTTGCTGCCTCAGCGGTCGAGTATCACCTCTCTGCTCTCGGTATGCTTAC
TTCATTACCAGCAGTCTCCGATGCACAAGCATGAAGAGGACCCTTCGAGC
TTGCTATTGATGTGCGGTTGCGTGTACTGCTGTAAAGGCGTCTCTCTTTA
GGGGGGATGGGGTGGGTTAGTCCGCTCGCTTGCATTCCGAAGTTTTTGGG
GGTCAATCTCTGATTTCAGAGTAACAACACGGACAGGCGGAGAGGTATAG
TTCCTTGTACATAGTATTTGCCAAACCGCGGTCAGGAGCTGTTTGTCAGA
ATGGGGGGGAGGAACGGCTGTGTAGCGTACCTGGAGAGAGGTAGTTCAAG
CCTCACAGTTTACAACCGCTTGGTATGCACGCAAAACACATGCGTGTGTT
CCGTGTGTTCGTGACATTTTGACTTTCCTTCCGATACATACAACGTGATG
TTTAGATTCGAGTGTCCTCCTCAGCGGTACATCATCATCATCCGGTGTCA
AGACCTCTCTCTCTTTCTCGTTCTGGACGCACATCTCTGGCAAATCTATC
TACTTATGAAGCAACCCGTATCGTATGTTCTCGAACAGTTATCAAACGTG
GGTGAGATGGTTCAAGGTGTTCAAGTTCGACGTGCTAATTCCTCGCAACA
TCTCATAGTTGTGTCTACAATTTTGTTTTGCCCCGATTCCTATCCACACC
GCCGCTGCTCTTCTACGTGTCTCGTGGTACTCTTGCTTCCCGTCCGCACT
GCCGCTGCTCTGTTACGTTTGTCGTGGAACTTGGGTGGCACAGGCGGTAG
CGCACGTATGCGTGGCGATAGGCTTCACTGCGACTTCAGCCGGAGCTCTC
GACTGCCTGACAGATGTGGTGAGCAGAGACGTTTCTACATGTTGTGCTAG
CTATTCGCCTTACGCTGATCTAAGTTGACGATGTATTGCTAGGGTGCATA
ATGCAGGTCTTCTGCGTGTCGAAGTCAACGCCAATTCCCATCGCCTTGCA
GTGGAACGCCTCACACAAATGTCTGCTAGGTTGCTTCTGTTTTGTCGCCG
TTGGAAACGGTTCGACATGCTATTCCATCGTATCGTTTTGTGGGTACTCT
CTCTCGGAAGGACTGATGAATGTGAAATTGGTTGGAGCAGGAGAACTGCT
CCGACCTTGCCATAAGCAGACGCTGACAGCAGTGCGAGCTGCTAATATGC
GTACCATTTTTGTCATCCTGGCGTGTGGTCGAGCTCCCTGACGACGTTTC
CTATTTCCAATGCGAGTGCGATGTACATGAACTGTTCGCAAATTGACGTA
GACAGGGATTTCCGCCATTACACACAACTGGCGACGCGTGGGTGGCTCTC
TCAGTCGCTTGACGCTGTATACGAGTCTCACATCGAACTAGTGATATAAG
CACGCAAGGCATGCGCTACGGCGATGCTCTGCTTATCCGCGGGTTGACGA
CGTTCATACGCCGTTGTATCGTGCCTGATTCTCACCCCTCGAAGCGTGTC
GTACGAATTTTTCTCTATCTTTGGTCAACATTTCATCTCCCCGCCTTAAT
ATTGGCCTATGCACGTACAGTATTGGAGGTAATTTATGCGTAATACGATC
AATCTGAGAGCAAGTCAGCTGCAATTCAGAATCCCTCCCCCGGCGTCCCA
ATAAAAAAGGAGAACACCGACCAAGCCGTCGCCGCATCTTGACCATGGGA
ACCCCCCCCACCTCATGGTATTTGGGAGCGCCAGAGAACACTCCTGTAGC
ATCCGGTGTGACGTTACGAGGCTGTGCTTTTTAATGGCTTGTCTGCTTTC
TAAAATGTGGAAGAACCCGCGGTATATGACATGCTCAGGTCCAGCGATAT
GTGGAGACCATGGCGAAACGTACGATGGAGAACACGTACCGAGCTGGTCG
GACCGAGCCCAACATACCGGACGTTTTGCAAGGATTCCAGCAAATGGTGA
GCACGAGCAGGGTTGGAGCAACATCCCGTGACGTGTGCGTTGATGGCACG
ACCTGGAGAGAAGAATGAGGATGGAGAAATTGCATTTCTCAAGCGTCTTC
GGCTTGTGTGTCAAGCGTCTCTTGTGTCCTTGTCCGCGAATGTCGGAAAC
GCGAGAAATATTGTAACCCTCCCGGCGACAACGCCTCGTTGGGTACCTGA
GGAATTGTTCCAAAATACAGTCGGCCGGATACCCCCGGTCGTAATTTGAA
AAGAGGTAAGGTTGCTAATAGACCAGGGATAACGGAACAAGACGCGTCAG
GTCAGCGCTATGACCCCGCTCTCGTGCGGGACACACTTTGGTCGTAGCGG
GTAGAGGATGGCCATGCTAGAAGCGGAGAACGGACTAAGTGTAGCTTGAT
CCAGGCGTTTGCGTCTTGAGTCTGGCCAATTCTGTATGGCTCGAAACAGT
TTGGGTGGATTCACTGTGTCCGTAGATAGTGGCGTTCAACTACTTGGCAT
CAGGCTAGCCGCAGACGATTTTAACCGACCCTGGCCACATATCTATCTCC
CTTTCGCCCACATCGTAGCGAACGCCGCTGAGCTGGACGGAGCTTCGAGA
TTTCGCCTTCAGCGAGGACGGTTACTCGAACCGTTACGAAAACGCGGCCT
CCAGCGGTAGCGGCAGCGCCGCTCCCGCCGCTAACGGGTCTGGGGGCGCT
AGGGCGGCAGGAGGCGGGCGGCAAGAGTTGCCAAAGCGGTGGGACCAGCC
GTTCCATCACGCGGTGCCCCCGTTCCCGATGCCGAGAAAACGCGCCGCTC
CCTGGGATGACGCGGAGGATGGAGAAGAGGGCGCAACAGAGGGTGCGAAG
CGAAACATAGACGGCGTTGTTAGGAACCCGGGGGGAGGGCGGGACTGCCG
TGTATATCTGGAAGGCGTTTGTAGTAGCCGGGAGGGAGGGGGGGGGTAGA
GTACGTTGGGCGCTTTCGTGGGTTTTTTTCGATGTTTCACCATGTGGGGA
GTGGAGGTCACCTTCTTCGTCGATCATGTCCGAACGAAGCTTTCGTGAAA
CATTGACCATGTGTGTCATTTGCATGAGCTCGGGGCCCGAGAAGTGCGGT
TGATTGAAGACGGTTGCCACCGTAGTTGCGCTTGGGCCGAAGCGTGATGT
CAATCTATGCGTATATCTACTCAGCAACCAACAAAATGATTTCAGGTAGA
ACAAAATGGACAACCATACGCACGAGCGTCTTGTGGTGAATGCGGCAAGT
TACCATTTGTGTGTGTGTGTGTTTATCGAGAACAGCAGTAGTTGTTGGCT
CCAAGAGACACGGCCGAAGCTACCTGGCAAAACAATCCAGATAGCCCAGG
CAAGGCGGGACTGGTTCTTGCTCTCTCACCTCCCCACTTTCGCGACCACT
GGTCACGTCTGCCTCCCCCCTGATTGGCCACCGCTGGTCGGTCCTGTGGT
AACATTGCTCCTTTCTCTGGAGGACGCGTGGTCAATGGTCAACACCTAAG
ACATGCAAAAGATGAGTATCAGTACCCCCCCACCCCCACCGCCCGTCCCC
TCCGCGGGTGCCCATCGTTTCTCGTGTTTCGCGCGGCCGCGTTTACCAGG
GCCAAGATCGCGACCACCTCACATCCCGGCCTTCATGCCACCACTGCCGC
CCAGCACTAGCAGGGGGGCCTCAGCGGGGTCGGACAGAAGTTTAGCGGAG
GTGGGTGGGGATCAAGCAAGTATAGCAAAGATTGCTGAAATCACGTACTT
TGGGTTGATGCGAATCTCGACGACAAGTTAAGCCTCCAGCTACTTCTCTC
AACAAGCAATCTTTGCTTCCCTGTTTTTTTTTTCGCGCGAAGATCCGACT
GGAGAGATTAAAGCGGCAGCGTCAAGGCGAGACGGCTCTAAGAAGTCTCG
GGGCTCCAGGGGCTGCTGCTGGAGCAGCGGCCGCGGGAAATACTTGCGCC
GCCTCCGCCGCCGCCGCCGCGCCGTTAGCATCCGGCTCTTCCGCGCCCGC
GGAAGGTCCTTCCAGCGAGAAATCTGGGGGCATCAGCAAAATTATTATCA
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69:4651..9351+

>mRNA_Ecto-sp13_S_contig69.17873.1 ID=mRNA_Ecto-sp13_S_contig69.17873.1|Name=mRNA_Ecto-sp13_S_contig69.17873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:4651..9351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCTCGACGAGCTTATCGAGGTCGATGCCAGGTCGCGTGCTCGAC
CATGACGAATTCCAAGGACGAGGGGGAGGTGGACAGCGCGGAGTTCGCGA
GAATTCTCACCAAGCAGGCGGTAGCGCACGTATGCGTGGCGATAGGCTTC
ACTGCGACTTCAGCCGGAGCTCTCGACTGCCTGACAGATGTGGTCCAGCG
ATATGTGGAGACCATGGCGAAACGTACGATGGAGAACACGTACCGAGCTG
GTCGGACCGAGCCCAACATACCGGACGTTTTGCAAGGATTCCAGCAAATG
CGAACGCCGCTGAGCTGGACGGAGCTTCGAGATTTCGCCTTCAGCGAGGA
CGGTTACTCGAACCGTTACGAAAACGCGGCCTCCAGCGGTAGCGGCAGCG
CCGCTCCCGCCGCTAACGGGTCTGGGGGCGCTAGGGCGGCAGGAGGCGGG
CGGCAAGAGTTGCCAAAGCGGTGGGACCAGCCGTTCCATCACGCGGTGCC
CCCGTTCCCGATGCCGAGAAAACGCGCCGCTCCCTGGGATGACGCGGAGG
ATGGAGAAGAGGGCGCAACAGAGGGGCCAAGATCGCGACCACCTCACATC
CCGGCCTTCATGCCACCACTGCCGCCCAGCACTAGCAGGGGGGCCTCAGC
GGGGTCGGACAGAAGTTTAGCGGAGGTGGATCCGACTGGAGAGATTAAAG
CGGCAGCGTCAAGGCGAGACGGCTCTAAGAAGTCTCGGGGCTCCAGGGGC
TGCTGCTGGAGCAGCGGCCGCGGGAAATACTTGCGCCGCCTCCGCCGCCG
CCGCCGCGCCGTTAGCATCCGGCTCTTCCGCGCCCGCGGAAGGTCCTTCC
AGCGAGAAATCTGGGGGCATCAGCAAAATTATTATCAG
back to top