mRNA_Ecto-sp13_S_contig69.17872.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69.17872.1
Unique NamemRNA_Ecto-sp13_S_contig69.17872.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69.17872.1 vs. uniprot
Match: D7FJ84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ84_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.750e-125
Identity = 224/263 (85.17%), Postives = 226/263 (85.93%), Query Frame = 1 
Query:  193 MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAAGEGRFKATGTNRAAEEMRERTVGLVTAEEFRKAREAADSLEEAEAKRRQEEEAVAEEARETARRTAERKKXXXXXXXXXLQKSKMSFALEEXXXXXXAESSGNRVGPQRTDPTSLGAGKPAGSPGCTAVEKEGGDDRPSILPSGQGITTNRDGCGGGMSESRSFKGAAPDEENSSAAAKLRERLGRDQP 981
            MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAA EGRFKATGTNRAAEEMRERTVGLVTAEEFRKAREAADSLEEAEAKRR                      XXXXXXXXX   SKMSFALEE  XX  AESSGNRVGPQRTDP SL AGKPAGS GCTAVEK+GGDD+PSI PSG GIT NRDGCGGGMSESRS KGAAPDEENSSAAAKLRERLGRDQP
Sbjct:    1 MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDRASEKEQQSWDLLKQAVGKGGGAAADEGRFKATGTNRAAEEMRERTVGLVTAEEFRKAREAADSLEEAEAKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKMSFALEEDEXXE-AESSGNRVGPQRTDPASLAAGKPAGSLGCTAVEKDGGDDKPSIPPSGHGITKNRDGCGGGMSESRSLKGAAPDEENSSAAAKLRERLGRDQP 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69.17872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ84_ECTSI5.750e-12585.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69contigEcto-sp13_S_contig69:315..4554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1169
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008500.1
Cds size792
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69.17872.1prot_Ecto-sp13_S_contig69.17872.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69 500..4324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.345691-UTR-Ecto-sp13_S_contig69:314..4991681463947.345691-UTR-Ecto-sp13_S_contig69:314..499Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69 315..499 -
1681463947.4335084-UTR-Ecto-sp13_S_contig69:4324..43721681463947.4335084-UTR-Ecto-sp13_S_contig69:4324..4372Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69 4325..4372 -
1681463947.444325-UTR-Ecto-sp13_S_contig69:4410..45541681463947.444325-UTR-Ecto-sp13_S_contig69:4410..4554Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69 4411..4554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.3702338-CDS-Ecto-sp13_S_contig69:499..7781681463947.3702338-CDS-Ecto-sp13_S_contig69:499..778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 500..778 -
1681463947.3864696-CDS-Ecto-sp13_S_contig69:1401..15361681463947.3864696-CDS-Ecto-sp13_S_contig69:1401..1536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 1402..1536 -
1681463947.398751-CDS-Ecto-sp13_S_contig69:2176..22781681463947.398751-CDS-Ecto-sp13_S_contig69:2176..2278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 2177..2278 -
1681463947.4107814-CDS-Ecto-sp13_S_contig69:2975..31911681463947.4107814-CDS-Ecto-sp13_S_contig69:2975..3191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 2976..3191 -
1681463947.421342-CDS-Ecto-sp13_S_contig69:4264..43241681463947.421342-CDS-Ecto-sp13_S_contig69:4264..4324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69 4265..4324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69.17872.1

>prot_Ecto-sp13_S_contig69.17872.1 ID=prot_Ecto-sp13_S_contig69.17872.1|Name=mRNA_Ecto-sp13_S_contig69.17872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
MDRFASMHDEDIDKLGIPNQGGARGGGGEGGWKGRKRARELSQLKDRLDR
ASEKEQQSWDLLKQAVGKGGGAAAGEGRFKATGTNRAAEEMRERTVGLVT
AEEFRKAREAADSLEEAEAKRRQEEEAVAEEARETARRTAERKKRKSEAK
KKRLQKSKMSFALEEDEDEEEAESSGNRVGPQRTDPTSLGAGKPAGSPGC
TAVEKEGGDDRPSILPSGQGITTNRDGCGGGMSESRSFKGAAPDEENSSA
AAKLRERLGRDQP*
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mRNA from alignment at Ecto-sp13_S_contig69:315..4554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69.17872.1 ID=mRNA_Ecto-sp13_S_contig69.17872.1|Name=mRNA_Ecto-sp13_S_contig69.17872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:315..4554- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACGGGAGCGACGACCTGCCTTGTCTGACTCGTGCACCCACCGTGCCA
ATCAGTTTTTTCATCAGGGTGTACTCTCCGCTCGACCTGTCTCCTGCGTG
CGTGCTTGTGTGCGTGCATGGTACTGTGGCGGCCTGCACGATTCTTTTCC
AATTAGGAGAGTCAAGTATTGTACCAGAGTACAGGTAACCTGCCGCAGAT
TGTTGTCGCTGGATTTCTGAGAGAGAAACCATGGACCGCTTCGCAAGCAT
GCACGACGAAGACATCGACAAGCTGGGAATCCCGAACCAAGTGAGTCACG
ACAAGCTTCCCATGTTCGTCTCCGCGATAGGATCGCCTCGTAATAAGTTG
TGAAATGCGAGGAGCGTTTGCAGTCGGCTTGCTGAGCGAAACGACACGCA
GGGGGCATCGATTTCAAAGCGATACGATCACCAGAATGTCACCTCTTCAC
GCCACACAAATGCCTCACCACATCCGTTCTATTGAACCATACACAAGTTG
ATCAACGAGTGGCATGATTTTACTCATGCAGGAGTGTCATACATCTGATT
TTTTCTCCGAACGACGACCCTCTCTCTGCTCAAACGTTCGCGGTATTTAT
GACTAGTCATGGTACCTCGGTGGTCGCACCCACTGTCGCCCTCCCCGCGC
GAGGCACCCGTAGTTTCTGTTCTTGTGTGGGGGGATCATTCGTTAACGGT
TGTCATGTCAATAGGAGCGAGTAGGCGCCTATCCTCTTTCTCTCCACAAC
GACACGTTGTAGGAGTTGTCATGTTCAATAGGCGGTACAACTTGTAATTA
CACCGCTTCTTGGTGGCCTTCACCCGCAAAGCCCGCTTCCCGAACAGCGA
CACCAAAATACGGCCTTATCAACACGAACGGAGTGTAAGATTCCTAACAT
GAGCCGAGGCGAAAGCACGATGAACGCAATTCACAGGCGACCTCTTTACG
GCAGGCCATCATACAAAATTTTCTTGTCCAGCGGGCGCTCTCTACTCCAG
CCTCCTTTTCCCGCCACAACTGCATGCTCCTCTTGCGGACGGCGGTCCGC
CCGCCCTCTTGTCCGTCCTCGTGTGCCGACGTGCTGTCGGCTAAGCCGTC
CCTCCTCTGTAACAGGGGTCGAACGCTTGTTTTGCAAGCTTTGCAGTCCG
CCAAACGAGGCCTGAAAGTCCTTGCTACAAAATAGTTATGCTCAGGTGGG
TGTGCTGGTAGGAGGACGGGGTGTGAAAGGGAGTGATTTGTCACGACAGC
AGTCCTCTGCATGCATTACCATCGTGACACAGTAGAGTGGTAGAACCCTC
CCATCTCCGACCAACCGTTTCCTATATGTGTGTACCCCACGGCCGCTCCG
CTACTTTCGCTAGGGAGGTGCGCGAGGCGGCGGGGGAGAGGGTGGGTGGA
AAGGCCGGAAACGCGCGAGAGAGCTGTCCCAGCTGAAGGACAGGCTGGAC
AGGGCCTCCGAAAAGGAGCAGCAGTCTTGGGACCTCCTGAAGCAGGCTGT
GGGTAAGGGGGGAGGCGCGGCAGCCGGCGAGGGTCGCTTCAAGGCCACCG
GCACGAACCGGGCAGCGGAGGAGATGCGGGTGGGCTATCCACTTTCCAAC
TCCTCCCTTTTTTTGAGGCCAATGATCGGCTCACTGTGAAGTGTGTTTTG
TTTCCGGCTTTCTCCCTCCCTGTGTAGAGATGAGGACCGCTTGGAGATCG
CTAGCCAGGTGGCGAAGCGACGCAAGGTCATGTGCCCTCAGTGCGTCGGT
GTTCTGTGAATCGCCCCAGATGAAATATCACGGGCGGCTCCAGGCACGGT
GTCACCAGTACTCTGTTTTGCAGCGCGTGTCCAGGGATTCAAGTCCCCGC
CGTCGGGCGAGCTTCGCTCGAAGTTGGATGTTTCCGCCTTCGTGAAACCA
CAAAATGTCGTTGCTCGTTCGGGCCGAAGCTGCGATCGTGCGCGAATCAC
CTACAGTAGGTTGTTCGAAGGCGTCCGATCATTCGAGAGCATGAGAAGGT
TGTTGCCAATCTTGCCAGATCGATCGTGTATCGTGCGCGCATCATAGCGC
CTGCGTTGTAGTCCTATTCGACAGAGCAACCAGTGACGGTAGTTTCGCTC
CCGATGTTTGTTGCGGGACAATTATTGCAATTTTGAAGTTCTCGCTGAGC
ATGGAATGTGAGAGCGTGTTCAGGCTTAACCGACACCCTGCCCCCTGCCT
GGCCGTGAGAACTATGGTGCTCTCTCGCCCAAAGGTACGCGTGAATGATT
CACGTACGTTTTTGTTTGATCGACAGGAACGGACGGTCGGACTGGTAACG
GCAGAGGAGTTCCGCAAGGCCAGGGAGGCCGCCGACTCTTTGGAGGAGGC
GGAGGCGAAGCGAAGACAAGAGGAGGAGGTAGGTACGCATAGGTCGGGCG
TAAACTGGTCATTGCGACAGGCCCGTGCGCTACACTTATCCCGTGATCGT
GATCATGACCGTGACCCAGTCATCGGGACATTGTTGCTTCGCGGTTGCCT
TCGGCGTGCATGCCAGATTTGTTTCTGTTCTGTTTTTTCCTTCTCGCGGA
GGAGCAGGCTCGTGCGAATGTGATGGGCTCAACTTACGTTGCACTCGGAC
CAGCACTCTCACGGCGTTTTGAGTCCAACTCGTGGGAGGGCGGACGGAGT
GTCGACCTCCCGAGCGCCAATGTCACAATCATCTGGGTTGGACATGTGCT
CAGAATCGCCTGTCGTATTGTGGTGCGACTTCGTTCGAGAGCTGTTGGTT
TTTCGTTGTTTGTGTTGTCATTGCTTTGTACCCCGTTTCATTCTTCGTGC
CGCGCAAGCCTTGCGACTTTCTCTACTCGCGCACGGCGGTGAAGGTGGCT
ATAATCTCGTCGGGGGTTTTGTTGGCTCTTGCAGATATCGTATGACGATT
GGAGTCTGGCGTGCATGTGTACGTGAACAAGACTTTATTTTTCTACCGAA
GAGTCTCGTGGGCCTGAGATCACGGACGGACGGTTTCAAACGATTCCCGT
TGCGGCGGAAACGCGCAGGCGGTAGCGGAGGAGGCGAGAGAGACGGCGCG
AAGAACGGCCGAGCGAAAGAAGAGAAAATCCGAAGCCAAAAAGAAACGCC
TCCAGAAGAGCAAGATGAGCTTTGCCTTGGAGGAGGACGAGGACGAGGAG
GAGGTGAGCCACACACCAACAGCGTGGGGGGTCCCATTCAGCAGTGGGGA
CAGGGTTGAGGGTGTTGCTGTTCAGAGGGGCTCAGGTTGGCTAAAGAGAG
TTTACATGTGTTGGCGACTCGAACGCCGGAACTCAGCGCGGGGGGGGGTC
AACAAGAGGAAAACAACAGGATAGGGAGTTAGATGAGTTGAATCGGCGGA
ATTCGTCCGAAGAGGAAGGAGAGGCGAGTGGAACTGCAAGAGGGGTAGAT
AGCGAGACGCGACAGGGGTTCGGTAAAACGAAGAACAAAAATCGCTTGCA
CGGTAAGCGATATCGCTTGGTGGTGTGTGGGGTCACGGAACGCTACATCT
CCGAAGGCAGCTCTGGCATCGAGTGCGGTCTTGCCCTCTTTTTCACGGAG
GGGGCTTGATCTTCGTCGTCCGTTGGGGGTTGGAACCACCCCTTCCGTTG
TATGTTCGCCCCCGCTCACTCCATGACGGAGGAAAAGTAGCACGGACAGC
CGTTGTCTGCACCATGCGCGTGGTGCATACTCGGTCCGATCCAGCCGAAT
GGCATTGCGAGCAACAGGAACGCTCCTAACCCCACGCCCATTCCCGGCTG
CATGCCATTGTACCGTTCGTTGGCAGGCGGAATCTTCGGGCAATCGCGTA
GGGCCACAGCGAACAGATCCCACCTCCCTGGGTGCCGGGAAACCTGCCGG
GTCGCCTGGGTGTACAGCAGTGGAGAAGGAGGGTGGGGACGACAGGCCAT
CAATACTCCCGAGTGGGCAAGGCATCACGACAAACAGGGATGGCTGTGGG
GGAGGCATGTCGGAAAGTCGGAGCTTTAAGGGGGCCGCACCGGATGAGGA
AAATTCCAGCGCAGCCGCCAAGCTCCGGGAACGCCTGGGCCGTGATCAAC
CGTAGGGTTTTCTTGGTTCCAATCGATGCGTGTACCTTTTTCAAAGCGTT
TGTGTTTGTTGACGATGTGGTGGTTGAATGACAAGTAGCGTTGTTTGGGT
TGGCCGTTCGAGCAGTTTTTTATCCTCTCACGACAGCCAATCAGAACGCA
CGGGTTCACGAGAGAGGGGGGTTCCATCTGAAACGCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69:315..4554-

>mRNA_Ecto-sp13_S_contig69.17872.1 ID=mRNA_Ecto-sp13_S_contig69.17872.1|Name=mRNA_Ecto-sp13_S_contig69.17872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69:315..4554- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCTTCGCAAGCATGCACGACGAAGACATCGACAAGCTGGGAAT
CCCGAACCAAGGAGGTGCGCGAGGCGGCGGGGGAGAGGGTGGGTGGAAAG
GCCGGAAACGCGCGAGAGAGCTGTCCCAGCTGAAGGACAGGCTGGACAGG
GCCTCCGAAAAGGAGCAGCAGTCTTGGGACCTCCTGAAGCAGGCTGTGGG
TAAGGGGGGAGGCGCGGCAGCCGGCGAGGGTCGCTTCAAGGCCACCGGCA
CGAACCGGGCAGCGGAGGAGATGCGGGAACGGACGGTCGGACTGGTAACG
GCAGAGGAGTTCCGCAAGGCCAGGGAGGCCGCCGACTCTTTGGAGGAGGC
GGAGGCGAAGCGAAGACAAGAGGAGGAGGCGGTAGCGGAGGAGGCGAGAG
AGACGGCGCGAAGAACGGCCGAGCGAAAGAAGAGAAAATCCGAAGCCAAA
AAGAAACGCCTCCAGAAGAGCAAGATGAGCTTTGCCTTGGAGGAGGACGA
GGACGAGGAGGAGGCGGAATCTTCGGGCAATCGCGTAGGGCCACAGCGAA
CAGATCCCACCTCCCTGGGTGCCGGGAAACCTGCCGGGTCGCCTGGGTGT
ACAGCAGTGGAGAAGGAGGGTGGGGACGACAGGCCATCAATACTCCCGAG
TGGGCAAGGCATCACGACAAACAGGGATGGCTGTGGGGGAGGCATGTCGG
AAAGTCGGAGCTTTAAGGGGGCCGCACCGGATGAGGAAAATTCCAGCGCA
GCCGCCAAGCTCCGGGAACGCCTGGGCCGTGATCAACCGTAG
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