mRNA_Ecto-sp13_S_contig6899.17871.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6899.17871.1
Unique NamemRNA_Ecto-sp13_S_contig6899.17871.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6899.17871.1 vs. uniprot
Match: A0A6H5K099_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K099_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.990e-27
Identity = 146/186 (78.49%), Postives = 148/186 (79.57%), Query Frame = 1 
Query:    1 MKQSPATATGGAAXXXXXXXXXXXXXXXXXXXXXXXXXDGSGNAPQMASLCLERMVVAFSTPMGGADGERHTATSSRTTAGRRNGLPVQHYHHSRPPAGTRPSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPGSPSGRSXXXXXXXXDEPVSVAEDEEGKDRSKERSTESSSRFPSGRSRG 558
            MKQSPATA GGA XX  XXXXXXXXXXXXXXXX     DGSGNAPQMASLCLERMVVAFSTPMGGADGER TA +SRTTAGRRNGLPVQH+H             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXX  PVSVAEDEEGKD SKERSTESS R PSGRSRG
Sbjct:    1 MKQSPATAGGGAGXXRAXXXXXXXXXXXXXXXXGK---DGSGNAPQMASLCLERMVVAFSTPMGGADGERPTAAASRTTAGRRNGLPVQHFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PVSVAEDEEGKDHSKERSTESSFRSPSGRSRG 181
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BLAST of mRNA_Ecto-sp13_S_contig6899.17871.1 vs. uniprot
Match: D7G7E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.900e-24
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 MKQSPATATGGAAXXXXXXXXXXXXXXXXXXXXXXXXXDGSGNAPQMASLCLERMVVAFSTPMGGADGERHTATSSRTTAGRRNGLPVQHYHHS 282
            MKQSPATA G   XXXXXXXXXXXXXXXXXXX      DGSGNAPQMASLCLERMVVAFSTPMGGADGER TA +SRTTAGRRNGLPVQHYHHS
Sbjct:    1 MKQSPATAAGXXXXXXXXXXXXXXXXXXXXXXSGRGGKDGSGNAPQMASLCLERMVVAFSTPMGGADGERPTAAASRTTAGRRNGLPVQHYHHS 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6899.17871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K099_9PHAE3.990e-2778.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G7E6_ECTSI3.900e-2486.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6899contigEcto-sp13_S_contig6899:4687..7438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1647
Hectar predicted targeting categoryother localisation
Exons4
Cds size1647
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.182291-CDS-Ecto-sp13_S_contig6899:4686..49671681463947.182291-CDS-Ecto-sp13_S_contig6899:4686..4967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6899 4687..4967 +
1681463947.1988184-CDS-Ecto-sp13_S_contig6899:5439..58001681463947.1988184-CDS-Ecto-sp13_S_contig6899:5439..5800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6899 5440..5800 +
1681463947.214463-CDS-Ecto-sp13_S_contig6899:6064..69821681463947.214463-CDS-Ecto-sp13_S_contig6899:6064..6982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6899 6065..6982 +
1681463947.2261279-CDS-Ecto-sp13_S_contig6899:7351..74381681463947.2261279-CDS-Ecto-sp13_S_contig6899:7351..7438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6899 7352..7438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6899.17871.1prot_Ecto-sp13_S_contig6899.17871.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6899 4687..7438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6899.17871.1

>prot_Ecto-sp13_S_contig6899.17871.1 ID=prot_Ecto-sp13_S_contig6899.17871.1|Name=mRNA_Ecto-sp13_S_contig6899.17871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=549bp
MKQSPATATGGAAGGGGGRASAASGGSSGSSGSGRGGKDGSGNAPQMASL
CLERMVVAFSTPMGGADGERHTATSSRTTAGRRNGLPVQHYHHSRPPAGT
RPSTTSHTPRAAAAAAAAAWLQEAEAAGAAAATSNLPGSPSGRSHGGGGG
EQDEPVSVAEDEEGKDRSKERSTESSSRFPSGRSRGGGGSSGGETAPAAA
AAAAAGGEGNAEEKDDGHSAKRRKRTSDAAAAAAEGGGDGKGEDGDAADD
DDAVDAAAAAAGEATAAAAAAAAEGGRGDCVGASPPAASSKKKGKGKARG
TQLSSSSPGGGATGAAAAGTAGTRTGEVTPSASAPASSPPPAAACRESER
GAGGGGGNTGVEIKTEVGGGGDGDGGDRVEERGEDEDALARLKTGSPPSV
PAAAAAAAGPATAVEPDPMDEDEEGEQEDEEDEDEDEEDEEDEEDEDDEE
EEEESSGGSGGRGVGGSGRAASTSGGGGGWGDLFTALGRTEVSSSGGGGG
GGGEDGARSVVLAGGLEAWQVAFVLEVADGAVLSAWSKTLGDSVAALES
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mRNA from alignment at Ecto-sp13_S_contig6899:4687..7438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6899.17871.1 ID=mRNA_Ecto-sp13_S_contig6899.17871.1|Name=mRNA_Ecto-sp13_S_contig6899.17871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2752bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6899:4687..7438+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAGAGCCCCGCAACCGCGACTGGCGGGGCGGCCGGCGGGGGCGG
CGGTAGGGCCAGCGCTGCTTCGGGCGGCAGCAGCGGCAGCAGCGGTAGCG
GAAGGGGCGGTAAAGACGGTTCCGGGAACGCGCCGCAGATGGCTAGCCTC
TGCCTCGAGAGGATGGTCGTGGCGTTTTCTACTCCCATGGGGGGGGCGGA
CGGCGAGCGACATACTGCTACTTCGTCTCGAACGACGGCCGGCCGCAGGA
ACGGCTTGCCGGTACAACATTACCACCACAGGTGACTGTGTGTTGGTTTT
TGTTCATTTTTCTGGCAATGATCAGAAAAATCAAACATGAGTGTCTACCC
TCGGAAAGGACTTCAGGAAGGCTTTTGCCAGTAGATCATGGCCACAGCCA
CCCGTACTTTGTGTGTTTTGATATTTTTTTTCGAAAACACAGCAAGCACA
TCTCTATCTTCAGATGAGAGTCCAGGAACGACTTATCATCACCGCTGGTA
ATTTTTTTGTTGTCGTGCCTCAGGAATCGTTCGCGAAAGACGTTTAGGAG
ACCGTAACCTTTTGTGAGGGGAATCGCTGAGGATTGACAGATTGTGAGAG
CTTTTTCTTGACTCTGAAGGTGGTGGTGCGTGGCCCGTCTTACTTGGCGG
AGATCAACTGCCCTCATCCACATTCACCCGCCTGTATGCCTTCAACGGAA
CCACCATCCCTGTCACCACCCTCATCCTGTCACCACTGTCTCGCGCTTGG
CAGCAGGCCGCCCGCGGGCACACGGCCCTCCACGACGAGCCACACGCCTA
GAGCGGCGGCAGCGGCGGCGGCGGCGGCATGGCTGCAGGAAGCTGAAGCG
GCAGGAGCGGCGGCGGCGACATCGAACCTGCCCGGCTCGCCGTCAGGCCG
CTCCCACGGCGGCGGCGGTGGAGAGCAAGACGAACCCGTGTCGGTGGCGG
AAGACGAAGAAGGAAAAGACCGTTCCAAGGAACGTTCCACGGAATCATCA
TCCCGGTTCCCATCGGGCCGCTCCCGCGGCGGCGGCGGTAGCAGTGGTGG
GGAAACGGCGCCTGCGGCGGCAGCAGCGGCGGCGGCGGGAGGAGAAGGAA
ATGCCGAGGAAAAGGTGGCCGCCGGGGATAGTGCGGGCGAACCGCCGAGG
GCCCCGTCTTCCGCCTCCAAGAAGAGGAAGGGAAAGGGAAGGGCGGCGGC
TGGGAGCGGGGGCGCCACTGCCGCCGCTACCGCCGACAGCGGTGGCGACG
GAGGAAGCGGCCGCAGCAAAGGGAAAGGTGGAAGAGGGGACGAGAGTGCT
ACCCCGTCCTCTGCCACCCCGCCAGCAGGGAAAACGCCGCCGCCGTCCTC
GTTGTCATCCGCCGGTGCTGGCTCGAAGGACGATGGTCACTCCGCAAAGA
GGCGGAAGAGGACCAGCGATGCCGCCGCCGCTGCCGCCGAAGGTGGTGGT
GATGGCAAGGGCGAGGACGGCGATGCTGCTGATGATGATGACGCCGTCGA
TGCAGCAGCAGCAGCAGCGGGGGAAGCAACAGCAGCAGCAGCAGCAGCAG
CAGCGGAAGGCGGACGAGGAGATTGCGTGGGGGCCTCGCCGCCGGCGGCA
TCGTCCAAGAAGAAGGGGAAGGGAAAGGCGAGGGGGACTCAGCTGTCATC
ATCGTCTCCGGGAGGAGGGGCAACCGGAGCGGCGGCGGCGGGGACTGCGG
GGACGAGGACGGGGGAGGTAACACCCTCGGCGAGTGCCCCCGCGTCTTCC
CCTCCTCCTGCTGCTGCTTGTCGGGAAAGCGAGCGGGGGGCCGGCGGCGG
CGGCGGCAACACCGGCGTTGAAATCAAGACCGAGGTTGGAGGGGGCGGCG
ACGGCGACGGCGGCGACCGGGTGGAGGAGAGAGGAGAGGACGAGGACGCT
CTCGCGCGGCTGAAGACGGGATCACCACCTTCCGTGCCGGCGGCGGCGGC
GGCGGCGGCAGGGCCGGCGACGGCGGTAGAGCCCGACCCGATGGATGAGG
ATGAGGAGGGAGAGCAGGAGGATGAGGAGGATGAGGATGAGGATGAGGAA
GACGAGGAGGATGAGGAAGACGAGGACGACGAAGAAGAGGAGGAGGAGTC
CAGCGGTGGCAGTGGTGGCCGGGGTGTCGGCGGGAGCGGCCGCGCTGCCA
GCACCAGCGGCGGCGGCGGTGGATGGGGCGATCTGTTCACTGCCCTGGGA
AGGACCGAAGTTTCTTCGTCTGGTGGCGGTGGCGGCGGCGGTGGCGAAGA
TGGCGCTAGGTCTGTTGTTCTGGCAGGCGGGCTAGAAGCATGGCAGGTGA
GACAGGCCCGGAGGCAGAATGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG
TTAGTATTTTTTGTTGTTGGGGGGGGGGGGAGGAGGAAAAAAGGGCGGGC
GATCNNNNNNNNAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTATCGTGGTATCATTCG
TTGTCCTGGGACCAGTTGGTAGACGGTAATCAGGACGGCTGTTGACACTC
AGCACAAGAGCTACACAAGAGAGAACGCCACTTTATCAACTGAATTCCTC
TGCACGAAACTATTTTCTCTGCCCACTCCAACAACAACAACAACACCAAC
GACGACGACGATAAGGTGGCTTTCGTCCTTGAAGTTGCAGACGGAGCAGT
CCTGAGCGCGTGGTCCAAGACCCTGGGAGACAGTGTGGCTGCCTTGGAAA
GT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6899:4687..7438+

>mRNA_Ecto-sp13_S_contig6899.17871.1 ID=mRNA_Ecto-sp13_S_contig6899.17871.1|Name=mRNA_Ecto-sp13_S_contig6899.17871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6899:4687..7438+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAGAGCCCCGCAACCGCGACTGGCGGGGCGGCCGGCGGGGGCGG
CGGTAGGGCCAGCGCTGCTTCGGGCGGCAGCAGCGGCAGCAGCGGTAGCG
GAAGGGGCGGTAAAGACGGTTCCGGGAACGCGCCGCAGATGGCTAGCCTC
TGCCTCGAGAGGATGGTCGTGGCGTTTTCTACTCCCATGGGGGGGGCGGA
CGGCGAGCGACATACTGCTACTTCGTCTCGAACGACGGCCGGCCGCAGGA
ACGGCTTGCCGGTACAACATTACCACCACAGCAGGCCGCCCGCGGGCACA
CGGCCCTCCACGACGAGCCACACGCCTAGAGCGGCGGCAGCGGCGGCGGC
GGCGGCATGGCTGCAGGAAGCTGAAGCGGCAGGAGCGGCGGCGGCGACAT
CGAACCTGCCCGGCTCGCCGTCAGGCCGCTCCCACGGCGGCGGCGGTGGA
GAGCAAGACGAACCCGTGTCGGTGGCGGAAGACGAAGAAGGAAAAGACCG
TTCCAAGGAACGTTCCACGGAATCATCATCCCGGTTCCCATCGGGCCGCT
CCCGCGGCGGCGGCGGTAGCAGTGGTGGGGAAACGGCGCCTGCGGCGGCA
GCAGCGGCGGCGGCGGGAGGAGAAGGAAATGCCGAGGAAAAGGACGATGG
TCACTCCGCAAAGAGGCGGAAGAGGACCAGCGATGCCGCCGCCGCTGCCG
CCGAAGGTGGTGGTGATGGCAAGGGCGAGGACGGCGATGCTGCTGATGAT
GATGACGCCGTCGATGCAGCAGCAGCAGCAGCGGGGGAAGCAACAGCAGC
AGCAGCAGCAGCAGCAGCGGAAGGCGGACGAGGAGATTGCGTGGGGGCCT
CGCCGCCGGCGGCATCGTCCAAGAAGAAGGGGAAGGGAAAGGCGAGGGGG
ACTCAGCTGTCATCATCGTCTCCGGGAGGAGGGGCAACCGGAGCGGCGGC
GGCGGGGACTGCGGGGACGAGGACGGGGGAGGTAACACCCTCGGCGAGTG
CCCCCGCGTCTTCCCCTCCTCCTGCTGCTGCTTGTCGGGAAAGCGAGCGG
GGGGCCGGCGGCGGCGGCGGCAACACCGGCGTTGAAATCAAGACCGAGGT
TGGAGGGGGCGGCGACGGCGACGGCGGCGACCGGGTGGAGGAGAGAGGAG
AGGACGAGGACGCTCTCGCGCGGCTGAAGACGGGATCACCACCTTCCGTG
CCGGCGGCGGCGGCGGCGGCGGCAGGGCCGGCGACGGCGGTAGAGCCCGA
CCCGATGGATGAGGATGAGGAGGGAGAGCAGGAGGATGAGGAGGATGAGG
ATGAGGATGAGGAAGACGAGGAGGATGAGGAAGACGAGGACGACGAAGAA
GAGGAGGAGGAGTCCAGCGGTGGCAGTGGTGGCCGGGGTGTCGGCGGGAG
CGGCCGCGCTGCCAGCACCAGCGGCGGCGGCGGTGGATGGGGCGATCTGT
TCACTGCCCTGGGAAGGACCGAAGTTTCTTCGTCTGGTGGCGGTGGCGGC
GGCGGTGGCGAAGATGGCGCTAGGTCTGTTGTTCTGGCAGGCGGGCTAGA
AGCATGGCAGGTGGCTTTCGTCCTTGAAGTTGCAGACGGAGCAGTCCTGA
GCGCGTGGTCCAAGACCCTGGGAGACAGTGTGGCTGCCTTGGAAAGT
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