mRNA_Ecto-sp13_S_contig6895.17868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6895.17868.1
Unique NamemRNA_Ecto-sp13_S_contig6895.17868.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6895.17868.1 vs. uniprot
Match: D7FXT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.660e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 PRNEHQLQQPSPKDHRRTFSLVSSRSTHSASVGVAEPSVGVTAVDHVSGTAMQENPASSHGMD--ADDSWKELTDNEGQGATRSRDVKG 261
            PR  HQLQQP+PKDHRR FSLVSSRSTHSASVGVAEPSVGV A DHVSG+AMQ NPASSHG+D  ADDSWKELTD+EGQGATRSRDVKG
Sbjct:  571 PRKAHQLQQPNPKDHRRAFSLVSSRSTHSASVGVAEPSVGVAAADHVSGSAMQGNPASSHGVDGSADDSWKELTDSEGQGATRSRDVKG 659
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BLAST of mRNA_Ecto-sp13_S_contig6895.17868.1 vs. uniprot
Match: A0A6H5L4P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.430e-31
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 PRNEHQLQQPSPKDHRRTFSLVSSRSTHSASVGVAEPSVGVTAVDHVSGTAMQENPASSHGMD--ADDSWKELTDNEGQGATRSRDV 255
            P N HQLQQPSPKDHRRTFSL+SSRSTH+A VGVAEPSVGV   D VSGTAMQ NPASSHG+D  AD+SWK+LTD+E +GATRSRDV
Sbjct:  552 PCNAHQLQQPSPKDHRRTFSLMSSRSTHTALVGVAEPSVGVAVGDQVSGTAMQGNPASSHGVDGSADNSWKDLTDDESEGATRSRDV 638
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6895.17868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXT9_ECTSI1.660e-3786.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4P3_9PHAE1.430e-3179.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6895contigEcto-sp13_S_contig6895:7098..7358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.7
Seed ortholog evalue4.9e-33
Seed eggNOG ortholog2880.D7FXT9
Model size261
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CJ4Y@1,2SDBE@2759
Cds size261
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463947.0204275-CDS-Ecto-sp13_S_contig6895:7097..73581681463947.0204275-CDS-Ecto-sp13_S_contig6895:7097..7358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 7098..7358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6895.17868.1prot_Ecto-sp13_S_contig6895.17868.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6895 7098..7358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6895.17868.1

>prot_Ecto-sp13_S_contig6895.17868.1 ID=prot_Ecto-sp13_S_contig6895.17868.1|Name=mRNA_Ecto-sp13_S_contig6895.17868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
PRNEHQLQQPSPKDHRRTFSLVSSRSTHSASVGVAEPSVGVTAVDHVSGT
AMQENPASSHGMDADDSWKELTDNEGQGATRSRDVKG
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mRNA from alignment at Ecto-sp13_S_contig6895:7098..7358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6895.17868.1 ID=mRNA_Ecto-sp13_S_contig6895.17868.1|Name=mRNA_Ecto-sp13_S_contig6895.17868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6895:7098..7358+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGCAATGAACACCAGCTGCAGCAGCCTAGCCCGAAGGACCACCGCCG
CACCTTCTCTCTCGTGTCTTCCCGGTCGACTCACTCGGCATCGGTCGGTG
TCGCGGAGCCAAGCGTTGGAGTGACTGCGGTTGATCATGTTTCCGGCACA
GCGATGCAAGAGAACCCAGCTTCAAGCCATGGGATGGACGCTGATGACTC
GTGGAAGGAACTGACAGACAACGAAGGTCAAGGGGCAACGAGGAGTCGGG
ATGTGAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6895:7098..7358+

>mRNA_Ecto-sp13_S_contig6895.17868.1 ID=mRNA_Ecto-sp13_S_contig6895.17868.1|Name=mRNA_Ecto-sp13_S_contig6895.17868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6895:7098..7358+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGCAATGAACACCAGCTGCAGCAGCCTAGCCCGAAGGACCACCGCCG
CACCTTCTCTCTCGTGTCTTCCCGGTCGACTCACTCGGCATCGGTCGGTG
TCGCGGAGCCAAGCGTTGGAGTGACTGCGGTTGATCATGTTTCCGGCACA
GCGATGCAAGAGAACCCAGCTTCAAGCCATGGGATGGACGCTGATGACTC
GTGGAAGGAACTGACAGACAACGAAGGTCAAGGGGCAACGAGGAGTCGGG
ATGTGAAGGGG
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