mRNA_Ecto-sp13_S_contig6895.17867.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6895.17867.1
Unique NamemRNA_Ecto-sp13_S_contig6895.17867.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6895.17867.1 vs. uniprot
Match: D7FXT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT9_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.680e-37
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:  340 MAGRVVVEGAAYPRCLLIEAYIPTSSETIQLYVSVDELERLFRDDPEKMWVGRKDDMVLELVKMLYFDYTLETE 561
            MAGRVVVEGAAYPRCLLIEAYIP SSETIQLYV+VDELERLFRD+PEKMWVGRKDDMVLELVKMLYFDYTLETE
Sbjct:    1 MAGRVVVEGAAYPRCLLIEAYIPASSETIQLYVAVDELERLFRDEPEKMWVGRKDDMVLELVKMLYFDYTLETE 74
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BLAST of mRNA_Ecto-sp13_S_contig6895.17867.1 vs. uniprot
Match: A0A6H5L4P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.160e-36
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:  334 LGMAGRVVVEGAAYPRCLLIEAYIPTSSETIQLYVSVDELERLFRDDPEKMWVGRKDDMVLELVKMLYFDYTLETE 561
            +GMAGRVVVEGAAYPRC+LIEAYIP SSETIQLYVSVDELERLFRDD EK+WVGRK+DMVLELVKMLYFDYTLETE
Sbjct:    1 MGMAGRVVVEGAAYPRCVLIEAYIPASSETIQLYVSVDELERLFRDDSEKLWVGRKEDMVLELVKMLYFDYTLETE 76
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BLAST of mRNA_Ecto-sp13_S_contig6895.17867.1 vs. uniprot
Match: A0A2R5GDM4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDM4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.890e-9
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  277 LLVSRTQAVLTGEGEKL--FGLGMAGRVVVEGAAYPRCLLIEAYIPTSSETIQLYVSVDELERLFRDDPEKMWVGRKDDMVLELVKMLYFD 543
            LL+ R  AVL  +   L  +G+G+AGR+ ++ A +PR + IEAY P + +T  L V++ +LE LF D P  + VG K  +   L+ M+Y D
Sbjct:  237 LLLLRQGAVLGTQAMVLSVYGMGIAGRIYIKPARFPRHVRIEAYCPRTRQTYSLRVNLSDLEELFADRPHLLEVGHKKSLCRALLDMVYMD 327
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6895.17867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXT9_ECTSI4.680e-3795.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4P3_9PHAE1.160e-3692.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GDM4_9STRA6.890e-939.56Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6895contigEcto-sp13_S_contig6895:19..2613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score147.1
Seed ortholog evalue8.4e-33
Seed eggNOG ortholog2880.D7FXT9
Model size585
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CJ4Y@1,2SDBE@2759
Cds size585
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463946.9062274-CDS-Ecto-sp13_S_contig6895:18..921681463946.9062274-CDS-Ecto-sp13_S_contig6895:18..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 19..92 +
1681463946.9259198-CDS-Ecto-sp13_S_contig6895:458..5991681463946.9259198-CDS-Ecto-sp13_S_contig6895:458..599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 459..599 +
1681463946.9371114-CDS-Ecto-sp13_S_contig6895:894..10041681463946.9371114-CDS-Ecto-sp13_S_contig6895:894..1004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 895..1004 +
1681463946.9474294-CDS-Ecto-sp13_S_contig6895:1908..20051681463946.9474294-CDS-Ecto-sp13_S_contig6895:1908..2005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 1909..2005 +
1681463946.958363-CDS-Ecto-sp13_S_contig6895:2450..26131681463946.958363-CDS-Ecto-sp13_S_contig6895:2450..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6895 2451..2613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6895.17867.1prot_Ecto-sp13_S_contig6895.17867.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6895 19..2613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6895.17867.1

>prot_Ecto-sp13_S_contig6895.17867.1 ID=prot_Ecto-sp13_S_contig6895.17867.1|Name=mRNA_Ecto-sp13_S_contig6895.17867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
REDELFPEPPRLRRDEEETTMNRNRYCLRNQGRCGEMAGGETNTGGEGSD
GSGGRRKWTRCKIAGTGVDTWRWEWSPEAQMMLGKLALWTGALLVSRTQA
VLTGEGEKLFGLGMAGRVVVEGAAYPRCLLIEAYIPTSSETIQLYVSVDE
LERLFRDDPEKMWVGRKDDMVLELVKMLYFDYTLETEVRGAVRA*
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mRNA from alignment at Ecto-sp13_S_contig6895:19..2613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6895.17867.1 ID=mRNA_Ecto-sp13_S_contig6895.17867.1|Name=mRNA_Ecto-sp13_S_contig6895.17867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2595bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6895:19..2613+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGGATGAGCTCTTCCCTGAGCCTCCACGGCTGCGAAGGGATGAGGA
AGAGACGACCATGAACCGAAACAGGTAGCCGTAGTAGTGCAATCACCAGC
GTGCTTCCAGTGAGAGCGTTTGTGTTTCGCTTTGGTTGTCTTAGTTGAGG
CTACCGATCTCTCGTTGTGACGTTTTGAAGGGGGTGCTATGCATGATCCC
AATGTGCAGCCTAAACTCTCACCCGTTTGATTCCTACCACAAGCGCCAGA
CGAGGTAGGAGGCACAGGACGGGTCCACCGCAAACGAAACTCCTTCCCAC
CCGCGACCTCCCCCAACCCCCAACATTCACGCTGGGTACCACTCGTACCG
GTTCGAGCCAGATCTAGGGAACTAGTCGAGTTCTCCGGCCTATCCACCTT
CTTGGTCCTTTCTCGTTCGACTTTTACGGCGGTTGATCAGGTACTGCCTT
CGAAACCAGGGCCGATGTGGCGAGATGGCGGGGGGTGAAACAAACACAGG
AGGGGAAGGCAGTGACGGCAGCGGCGGGAGGAGGAAATGGACCCGGTGCA
AGATTGCGGGGACGGGTGTAGACACTTGGAGGTAACGGGGCATCGCCGCG
TTGCTCTGCGAGATGCAGCTGTGTTGGACCGCGCCGTGTTTTGCTTCATA
TCGTGCGTACGGGAAGTCTAAACGCGCGCTTGTGGGTTCTACCCGTGTTC
CGAGTCTTTCTTCAGGTGCACGTCGCCTTCTTTGTCTGTTGGTAGTCGTC
TCGAATCTTCCTGAACGTGTGTGCTCACTGCAGTACCTCCATCCATGGCC
AGCAGACAAGTGCCAATGTGGTCGTTTTAAGTCACGGTTCCGAAACCAAC
GACGCTTTCCTCCTGGACGGTTCTAGGTGGGAGTGGTCCCCTGAAGCGCA
AATGATGCTTGGAAAGCTCGCGCTCTGGACCGGGGCTCTTCTGGTCAGCC
GGACGCAAGCGGTACTAACAGGCGAGGGCGAGAAGTGTACCCACTCCCAA
TATCGTCTACGCGTGGTAGGTGGCGGTGGCCACGGCCGTAATCGTCGTTG
TCGTAGCACTTGCACGATTCATCCTGGCCTTACATACGCGTTGGACCTGT
GTGTGTGTGTTTTCGGGCATACAAACACGCTGCTCGTTCACTGCCAAGCT
TTCGGCGCCTACCCACTGTTGGCGCATCCTCACGTGCCCTTTCGTTTAAG
TCTGAACAGTTTCCCAGCGTCCTTCATGTCTTGAATATTGCTGACATGTC
CTACCGTAGTCCCGAATGTTGCATGGTCGGGGCGGGCAGTCTTACGCCGA
CTCCTCGTTTGTTGTTTTGAGCTTGCGATACGTGTTTTCACTGCGCAAAA
GGTTGTGTCGTGCACCGCACGTGCGCTCTCTCTACTGCGTTGAGCACGAA
GACCAACCGCTCCGGGGGGGGTCGGTGGTTGCCGATGTACGCCCCCCCTT
TGGGCAGGTGGAAGGTGCACTCTCGTCTCGAGTCCACTCTCATATTCACC
CTCCATGTGCAGCCAAAAACACGCGTTGCTCGTCTGATGTGTCCTCAAGC
TAGGTTTTGATGCTTTCGACTCCGAAGAAAAAAAGCTTAGTTTCGTGTGT
CCTGGTTTGTTCGATTGTTTCTAGAAGCCGAACATCTGGTCGCTTCACAC
TGAGAAAAAAATCTTCCCGGACGGCTAAAGCGGTTTGGTCTGCACACAAA
CTCGATTCGATCGACCCAGTCTATCGGCTACGACCACCCGACCGTCCTTC
CCTCACCCGTGACCAGCGCGTACAAATGACCGCACCCTGCAACCCAAACC
CGATGAAGCCGACCGGTGCATGCACACCACCGTGTTCGCTTGAGATACCT
TCCAACATGGTGTCCCCCACTCCATGCAACTTTTTGGCAGTGTTCGGGTT
GGGAATGGCGGGCCGTGTGGTGGTGGAGGGTGCAGCTTACCCCAGATGTT
TGCTGATCGAGGCGTACATTCCAACCTCAAGCGAGACGTGAGTGCGTGTT
TGTTTGGAATTTCCGCTTCAGGAAGGCGTAGCTCAACGGATTTGATCGAA
ACCAGGGCTTTGAGATAGGAACAGCGAGGACGTTTTCGCGAGTGAACTGG
AAGCCCCCGACTCGGGGGGTCGTACGTGTCAGTGACCCAGTTTTTTACAG
TTTCGGTTCCTCGTTAGGTTTCGCCGTGCCTATCCGATTCGCAGTCAGCG
TGCGAGTTGAACTGACTAAAGCATCGTGAATTCAAAACACAGCGCCCGAA
AAGCACCCGAAACCCCTTCACGCCTGTCATGATTGGATTATCACAATACA
TTTTTTTTCGCGAGGGTTCTCCGTTTGAGAGGACCCGGATGCTCCTCTTC
CTAACGGAGTCGTGCTGCTGAAGCGCTTCCTTTCGCACCGCCTAACGGCC
GTGGCTACTCCATGCATACAATCAATTGTCAGGATTCAGCTGTACGTGTC
GGTGGACGAACTGGAGCGCCTGTTTCGGGATGATCCCGAGAAAATGTGGG
TGGGCAGGAAGGATGACATGGTGCTGGAGCTCGTCAAGATGCTGTACTTT
GACTACACGCTGGAAACTGAGGTGCGTGGCGCCGTACGGGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6895:19..2613+

>mRNA_Ecto-sp13_S_contig6895.17867.1 ID=mRNA_Ecto-sp13_S_contig6895.17867.1|Name=mRNA_Ecto-sp13_S_contig6895.17867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6895:19..2613+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGGATGAGCTCTTCCCTGAGCCTCCACGGCTGCGAAGGGATGAGGA
AGAGACGACCATGAACCGAAACAGGTACTGCCTTCGAAACCAGGGCCGAT
GTGGCGAGATGGCGGGGGGTGAAACAAACACAGGAGGGGAAGGCAGTGAC
GGCAGCGGCGGGAGGAGGAAATGGACCCGGTGCAAGATTGCGGGGACGGG
TGTAGACACTTGGAGGTGGGAGTGGTCCCCTGAAGCGCAAATGATGCTTG
GAAAGCTCGCGCTCTGGACCGGGGCTCTTCTGGTCAGCCGGACGCAAGCG
GTACTAACAGGCGAGGGCGAGAAGTTGTTCGGGTTGGGAATGGCGGGCCG
TGTGGTGGTGGAGGGTGCAGCTTACCCCAGATGTTTGCTGATCGAGGCGT
ACATTCCAACCTCAAGCGAGACGATTCAGCTGTACGTGTCGGTGGACGAA
CTGGAGCGCCTGTTTCGGGATGATCCCGAGAAAATGTGGGTGGGCAGGAA
GGATGACATGGTGCTGGAGCTCGTCAAGATGCTGTACTTTGACTACACGC
TGGAAACTGAGGTGCGTGGCGCCGTACGGGCTTGA
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