mRNA_Ecto-sp13_S_contig68907.17863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68907.17863.1
Unique NamemRNA_Ecto-sp13_S_contig68907.17863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.720e-51
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 246
            FRSVSHQVYGDD+HHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ
Sbjct:  352 FRSVSHQVYGDDNHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 433
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: W2LIN5_PHYPR (Deubiquitinating enzyme A n=12 Tax=Phytophthora TaxID=4783 RepID=W2LIN5_PHYPR)

HSP 1 Score: 150 bits (380), Expect = 3.000e-41
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 246
            FRSVSHQVYGDDSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ
Sbjct:  233 FRSVSHQVYGDDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQ 314
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: H3GFG4_PHYRM (Deubiquitinating enzyme A n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFG4_PHYRM)

HSP 1 Score: 149 bits (375), Expect = 1.150e-40
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDP 243
            FRSVSHQVYGDDSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDP
Sbjct:  233 FRSVSHQVYGDDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDP 313
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A8J5J3G2_9STRA (OTU domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3G2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.180e-40
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 246
            FRSVSHQVYGDDSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ
Sbjct:  447 FRSVSHQVYGDDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLSYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQ 528
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: G4Z036_PHYSP (Deubiquitinating enzyme A n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z036_PHYSP)

HSP 1 Score: 149 bits (375), Expect = 1.360e-40
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDP 243
            FRSVSHQVYGDDSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDP
Sbjct:  216 FRSVSHQVYGDDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDP 296
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A0P1AKP3_PLAHL (Deubiquitinating enzyme A n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP3_PLAHL)

HSP 1 Score: 149 bits (375), Expect = 5.790e-40
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 246
            FRSVSHQVYG+DSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ
Sbjct:  449 FRSVSHQVYGNDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQ 530
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A833TF83_PHYIN (Deubiquitinating enzyme A n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TF83_PHYIN)

HSP 1 Score: 148 bits (374), Expect = 8.200e-40
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ 246
            FRSVSHQVYGDDSH+ LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ
Sbjct:  472 FRSVSHQVYGDDSHYALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLHYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQ 553
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A3M6VJM3_9STRA (Deubiquitinating enzyme A n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJM3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.350e-39
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDP 243
            FRSVSHQ+YG+DSHH LVRA CMDYMESE  +FEPYV GDMAAF+RYL  KR++ VWGDDPE+QA+CE+YDRPAE++AYDP
Sbjct:  233 FRSVSHQIYGNDSHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYLRHKRRDGVWGDDPELQAMCELYDRPAEVFAYDP 313
[Close]
BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A484DTW9_BRELC (Deubiquitinating enzyme A n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTW9_BRELC)

HSP 1 Score: 144 bits (363), Expect = 7.820e-39
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYD 240
            FRSVSHQVYGDDSHH L+RA CM+YMESE  +FEPYV GDM AF+RYL +KR++ VWGDDPE+QALCE+YDRPAE++AYD
Sbjct:  230 FRSVSHQVYGDDSHHALIRAACMNYMESEKEYFEPYVVGDMTAFMRYLRIKRRDGVWGDDPELQALCELYDRPAEVFAYD 309
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BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Match: A0A3F2RFP2_9STRA (Deubiquitinating enzyme A n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFP2_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.690e-38
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDP 243
            FRSVSHQVYGDD HH LVRA CMDYMESE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QA+CE+YDRPAE++AYDP
Sbjct:  412 FRSVSHQVYGDDRHHALVRAACMDYMESEKEYFEPYVVGDMAAFMRYINHKRRDGVWGDDPELQAMCELYDRPAEVFAYDP 492
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68907.17863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC5_ECTSI9.720e-5198.78Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID... [more]
W2LIN5_PHYPR3.000e-4180.49Deubiquitinating enzyme A n=12 Tax=Phytophthora Ta... [more]
H3GFG4_PHYRM1.150e-4080.25Deubiquitinating enzyme A n=1 Tax=Phytophthora ram... [more]
A0A8J5J3G2_9STRA1.180e-4080.49OTU domain-containing protein n=1 Tax=Phytophthora... [more]
G4Z036_PHYSP1.360e-4080.25Deubiquitinating enzyme A n=6 Tax=Phytophthora Tax... [more]
A0A0P1AKP3_PLAHL5.790e-4079.27Deubiquitinating enzyme A n=1 Tax=Plasmopara halst... [more]
A0A833TF83_PHYIN8.200e-4079.27Deubiquitinating enzyme A n=1 Tax=Phytophthora inf... [more]
A0A3M6VJM3_9STRA5.350e-3976.54Deubiquitinating enzyme A n=1 Tax=Peronospora effu... [more]
A0A484DTW9_BRELC7.820e-3976.25Deubiquitinating enzyme A n=1 Tax=Bremia lactucae ... [more]
A0A3F2RFP2_9STRA1.690e-3876.54Deubiquitinating enzyme A n=4 Tax=Phytophthora ker... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68907contigEcto-sp13_S_contig68907:6..713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score178.3
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog2880.D8LCC5
Model size246
KEGG koko:K12655
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
Ec32 ortholog descriptionOvarian tumour, otubain
Ec32 orthologEc-14_005270.1
EC3.4.19.12
Cds size246
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463946.6175895-CDS-Ecto-sp13_S_contig68907:5..1701681463946.6175895-CDS-Ecto-sp13_S_contig68907:5..170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68907 6..170 -
1681463946.6343975-CDS-Ecto-sp13_S_contig68907:632..7131681463946.6343975-CDS-Ecto-sp13_S_contig68907:632..713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68907 633..713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68907.17863.1prot_Ecto-sp13_S_contig68907.17863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68907 6..713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68907.17863.1

>prot_Ecto-sp13_S_contig68907.17863.1 ID=prot_Ecto-sp13_S_contig68907.17863.1|Name=mRNA_Ecto-sp13_S_contig68907.17863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
FRSVSHQVYGDDSHHRLVRARCMDYMESEAHFFEPYVEGDMAAFLRYLEV
KRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQ
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mRNA from alignment at Ecto-sp13_S_contig68907:6..713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68907.17863.1 ID=mRNA_Ecto-sp13_S_contig68907.17863.1|Name=mRNA_Ecto-sp13_S_contig68907.17863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68907:6..713- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGCAGCGTGAGCCACCAGGTGTACGGTGATGACAGCCACCACAGGCT
GGTGCGAGCGCGCTGCATGGACTACATGGAGGTAAGCGAGGGTGTATCGA
GGTGCCACGAAGCGACGTGGGTTGCGCTTGATGAAGACGAAACCGACCAA
AATAGATTTATGAGGGCGTGGGATGAGTGAGGCGCCAGGCGATGTGTACG
AGTGAGCTATCGGGTACAGCAGTGGTTTGAAGGATTGCGATTAGTGCTAT
TTCGAGCGTGTTCGTTCTCGGCGATAAGTTTGGTTGGGTTTGTCCCGCCT
TTGTTGCTTTCGAGTTGGCATTTGCGGTTCTTGTCTCTTGAGAAGGAGTG
TAGCTTACGTGCAACGTGAGGAAATAGCGCCTAATATAGCGTCAAAGGCG
TTTCTTCGCGTTAGGCGTCACCTCATCACGCGCTTGGCGACTGGTACGAG
TGGCGTCGTCCTGTCTTGTCACATGATCTTGTGTCGTGGACAATTGTGGT
CCAATTTCCAGCGCACTTCGGTGTTTTTCACCCCCTGCTACAGAGTGAGG
CTCACTTTTTCGAGCCTTACGTAGAGGGAGATATGGCTGCGTTCCTGCGG
TATCTGGAAGTGAAGAGGCAGAACGCGGTGTGGGGCGACGATCCGGAGGT
ACAGGCTTTGTGCGAGATCTACGATAGGCCGGCGGAGATATGGGCGTACG
ATCCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68907:6..713-

>mRNA_Ecto-sp13_S_contig68907.17863.1 ID=mRNA_Ecto-sp13_S_contig68907.17863.1|Name=mRNA_Ecto-sp13_S_contig68907.17863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68907:6..713- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGCAGCGTGAGCCACCAGGTGTACGGTGATGACAGCCACCACAGGCT
GGTGCGAGCGCGCTGCATGGACTACATGGAGAGTGAGGCTCACTTTTTCG
AGCCTTACGTAGAGGGAGATATGGCTGCGTTCCTGCGGTATCTGGAAGTG
AAGAGGCAGAACGCGGTGTGGGGCGACGATCCGGAGGTACAGGCTTTGTG
CGAGATCTACGATAGGCCGGCGGAGATATGGGCGTACGATCCTCAG
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