mRNA_Ecto-sp13_S_contig68836.17856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68836.17856.1
Unique NamemRNA_Ecto-sp13_S_contig68836.17856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.040e-12
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQTQ 129
            QG+Y EAEPLYERSQAI EKVLG EHPDVA SLNNR  LL+ Q
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.510e-11
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQTQ 129
            QG+Y EAEPLYERSQAI E VLG EHPDV  SLNNR LLL+ Q
Sbjct:  660 QGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.860e-9
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQ 123
            QG+Y EAEPLYERS AI EKVLG EHPDVA SL+NR  LL+
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.590e-9
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRG 111
            QG Y +AEPLYE+SQAI EK LG+EH DVA SLNNRG
Sbjct:   88 QGEYTQAEPLYEKSQAIQEKFLGQEHSDVATSLNNRG 124
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.990e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLL 117
            QG+Y++AE LYERS AI EKVLG EHPDVA SLNNR LL
Sbjct:   16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNRELL 54
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.030e-9
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQTQ 129
            QG+Y++AEPL ERSQ I EKVLG EHPDVA SLNNR  LL+ Q
Sbjct:  498 QGKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.950e-9
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQTQ 129
            QG+Y EAEPLYERSQAI EKVLG EHP VA SLN+R  LL  Q
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.170e-9
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLL 117
            QG+YEEA PLYERS AI EKVLG +HPDVA SLNNR LL
Sbjct:  798 QGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRALL 836
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.390e-8
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQ 123
            QG++ EAEPLYERSQAI EKVLG +HPDVA  LNNR  LL+
Sbjct:  366 QGKHAEAEPLYERSQAIREKVLGPKHPDVAEVLNNRATLLK 406
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BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Match: A0A2W4QJT5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.460e-8
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNN 105
            QG+Y EAEPLY+ S AI+EK LG++HPDVA+SLNN
Sbjct:    8 QGKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNN 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68836.17856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3K8_9PHAE2.040e-1279.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXS7_9PHAE6.510e-1176.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI3.860e-975.61NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JY23_9PHAE4.590e-975.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE4.990e-976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE5.030e-972.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE5.950e-974.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJK0_9PHAE7.170e-979.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L226_9PHAE2.390e-873.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2W4QJT5_9GAMM2.460e-871.43Uncharacterized protein n=1 Tax=Candidatus Methylu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68836contigEcto-sp13_S_contig68836:148..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score63.2
Seed ortholog evalue7.7e-08
Seed eggNOG ortholog2880.D7G722
Model size282
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size282
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.6608539-CDS-Ecto-sp13_S_contig68836:147..3001681463945.6608539-CDS-Ecto-sp13_S_contig68836:147..300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68836 148..300 -
1681463945.69109-CDS-Ecto-sp13_S_contig68836:501..6301681463945.69109-CDS-Ecto-sp13_S_contig68836:501..630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68836 502..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68836.17856.1prot_Ecto-sp13_S_contig68836.17856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68836 148..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68836.17856.1

>prot_Ecto-sp13_S_contig68836.17856.1 ID=prot_Ecto-sp13_S_contig68836.17856.1|Name=mRNA_Ecto-sp13_S_contig68836.17856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
QGRYEEAEPLYERSQAISEKVLGREHPDVAISLNNRGLLLQTQGRCEEAE
PLFERSQAISEKMLGPEHPGVATSLNNRAELLRVQVGAVRTFR*
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mRNA from alignment at Ecto-sp13_S_contig68836:148..630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68836.17856.1 ID=mRNA_Ecto-sp13_S_contig68836.17856.1|Name=mRNA_Ecto-sp13_S_contig68836.17856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68836:148..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGAGGTATGAGGAAGCCGAGCCGCTGTATGAGCGGTCACAGGCCAT
CTCAGAGAAGGTGCTGGGTCGAGAGCACCCTGACGTGGCCATATCACTCA
ACAACCGGGGGCTGTTGTTGCAAACACAGGTGAGAGCCGCCAGACCAGCA
GACATGTCTTGGCGGCCTGTGGATGTTGTACATGGTTGTCAACAACGGGC
GGGGTTATTGTTGAGCCAGATGGAAAGTAAAACGATGTTCTGGAAGCTTC
AAGCAGAGAATGTTCCTCCGCAGTACTAGACCCGACTTGTGCTGCAACAC
GACCCTGCCACGCCGCCGACTGTATTCCAGGGGAGGTGTGAGGAAGCCGA
GCCGCTGTTTGAGCGGTCACAAGCCATCAGCGAGAAGATGCTGGGCCCAG
AGCACCCTGGTGTGGCCACATCGCTCAACAACCGTGCGGAGTTGTTGAGA
GTGCAGGTGGGAGCCGTTAGAACCTTCCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68836:148..630-

>mRNA_Ecto-sp13_S_contig68836.17856.1 ID=mRNA_Ecto-sp13_S_contig68836.17856.1|Name=mRNA_Ecto-sp13_S_contig68836.17856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68836:148..630- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGAGGTATGAGGAAGCCGAGCCGCTGTATGAGCGGTCACAGGCCAT
CTCAGAGAAGGTGCTGGGTCGAGAGCACCCTGACGTGGCCATATCACTCA
ACAACCGGGGGCTGTTGTTGCAAACACAGGGGAGGTGTGAGGAAGCCGAG
CCGCTGTTTGAGCGGTCACAAGCCATCAGCGAGAAGATGCTGGGCCCAGA
GCACCCTGGTGTGGCCACATCGCTCAACAACCGTGCGGAGTTGTTGAGAG
TGCAGGTGGGAGCCGTTAGAACCTTCCGGTAA
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