mRNA_Ecto-sp13_S_contig6880.17853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6880.17853.1
Unique NamemRNA_Ecto-sp13_S_contig6880.17853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6880.17853.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 3.320e-145
Identity = 206/223 (92.38%), Postives = 211/223 (94.62%), Query Frame = 3 
Query:   27 MGSFFYPALSEKSLIAFVKEVVSPTEVGRAVKAIRLGRVDAKSFFWLMRGFTSTKATELLAERGVRYAGPRPASHTSTYTGSPFFSSGRGITNLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATGGSGDFRTGSGDHDDNTYHLGGSSPPPCSAIIFGESCERAGRPGGERDGINGAGARVLTVLDWVGVYGECSESLLCAWVYRGEAQANQVDAAP 695
            MGSFFYPALSE+SLIAFVKEVVSPTEVGRAVKAIRLGRVDAKSFFWL RGFTSTKATELLAERG RYAGPRPASHTS  TGSPFFSSG+GIT+LLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVAT GSGD  TGS  HDDNTYHLGGSSPPPCSAIIFGESCERAGRP GERDGINGAGARVL+VLDWV VYGECSESLLCAWVYRGEAQAN+ DAAP
Sbjct:    1 MGSFFYPALSERSLIAFVKEVVSPTEVGRAVKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPRPASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGESCERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAWVYRGEAQANEADAAP 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6880.17853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI3.320e-14592.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6880contigEcto-sp13_S_contig6880:2797..4018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size698
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004510.1
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.3984623-CDS-Ecto-sp13_S_contig6880:2796..31771681463945.3984623-CDS-Ecto-sp13_S_contig6880:2796..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6880 2797..3177 -
1681463945.409544-CDS-Ecto-sp13_S_contig6880:3386..35991681463945.409544-CDS-Ecto-sp13_S_contig6880:3386..3599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6880 3387..3599 -
1681463945.4208448-CDS-Ecto-sp13_S_contig6880:3914..39921681463945.4208448-CDS-Ecto-sp13_S_contig6880:3914..3992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6880 3915..3992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.438988-UTR-Ecto-sp13_S_contig6880:3992..40181681463945.438988-UTR-Ecto-sp13_S_contig6880:3992..4018Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6880 3993..4018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6880.17853.1prot_Ecto-sp13_S_contig6880.17853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6880 2797..3992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6880.17853.1

>prot_Ecto-sp13_S_contig6880.17853.1 ID=prot_Ecto-sp13_S_contig6880.17853.1|Name=mRNA_Ecto-sp13_S_contig6880.17853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MGSFFYPALSEKSLIAFVKEVVSPTEVGRAVKAIRLGRVDAKSFFWLMRG
FTSTKATELLAERGVRYAGPRPASHTSTYTGSPFFSSGRGITNLLSSVSA
NGRVGDRFVLCFSDGVDACAQMITGCLVATGGSGDFRTGSGDHDDNTYHL
GGSSPPPCSAIIFGESCERAGRPGGERDGINGAGARVLTVLDWVGVYGEC
SESLLCAWVYRGEAQANQVDAAP*
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mRNA from alignment at Ecto-sp13_S_contig6880:2797..4018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6880.17853.1 ID=mRNA_Ecto-sp13_S_contig6880.17853.1|Name=mRNA_Ecto-sp13_S_contig6880.17853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6880:2797..4018- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGCCTCTTGCCTACTACAGCCCGATGGGTAGCTTCTTCTACCCCGCC
CTCAGCGAGAAGAGCCTCATCGCGTTCGTCAAGGAGGTCGTTTCCCCCAC
AGAGGTGTGTCGAATGTTGGTATCGACCGGCCAAAAAAGTCGGTCGAAGC
AAATTGTGCCTGTCTGTGTCCACTCTGTTTGCGTCTTCTTAGGTTTTGGG
TGGGAAAAATGCTTTCTTGCTACTCAATAAACTAAACGTGTCTCAGCAGG
AGGGCTTAAAACGAACATGTGACATGTGTGTGTGTGTCTTGTCCATCCCA
ACGTATTTCTTCAAAACAATAACGCGGTTGCTATCTCATTAACGAACGAG
ATGCAAACACGACAATGGTAAAGCAGTCCAGCCGATAATGAAGGGTAATG
CTTTGTGGAACAACCACAGGTGGGACGAGCCGTGAAGGCCATCCGTCTGG
GCCGAGTCGACGCCAAGAGCTTCTTCTGGCTGATGAGGGGGTTCACTTCG
ACCAAGGCAACTGAGCTGTTGGCGGAAAGAGGGGTACGGTACGCCGGGCC
TCGGCCAGCGTCGCACACGTCCACCTACACGGGGTCGCCGTTCTTCTCTT
CCGGCCGAGGCATCACCAACCTCCTCAGCTCAGTGAGTTTGTTTAGCATG
CCCGCCTCCGTGCTCCAACTGTAGTGGTATTATCTTAGGGGTGGCATTCC
CATGAGCGGAGCCTTACGCTTGAGGGTACGTCTTTGGTATTTACCTCCGA
CTCTCGCCATTTCATGGGGATAGTGCCGGTGGCGGAAATTTGCCCTATGC
GATCATGGCGCCCTGTTATTCCGCCTGTTCTCTTCGTTCAGGTTTCCGCC
AACGGCCGCGTCGGCGACAGATTCGTCCTTTGCTTCTCCGACGGCGTGGA
CGCCTGTGCGCAGATGATCACCGGGTGCCTCGTAGCGACCGGCGGCAGCG
GCGACTTTCGCACCGGCAGCGGCGACCACGACGACAACACCTACCACCTC
GGGGGAAGCTCGCCACCCCCGTGCTCCGCCATCATATTCGGAGAGAGCTG
CGAGCGGGCGGGTAGACCAGGGGGGGAGAGGGACGGGATCAACGGGGCCG
GCGCTCGGGTGTTGACTGTGTTGGACTGGGTGGGCGTCTACGGGGAGTGC
TCGGAGTCCCTCCTCTGCGCGTGGGTGTACCGAGGAGAGGCGCAGGCGAA
CCAAGTAGACGCCGCGCCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6880:2797..4018-

>mRNA_Ecto-sp13_S_contig6880.17853.1 ID=mRNA_Ecto-sp13_S_contig6880.17853.1|Name=mRNA_Ecto-sp13_S_contig6880.17853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6880:2797..4018- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGCTTCTTCTACCCCGCCCTCAGCGAGAAGAGCCTCATCGCGTT
CGTCAAGGAGGTCGTTTCCCCCACAGAGGTGGGACGAGCCGTGAAGGCCA
TCCGTCTGGGCCGAGTCGACGCCAAGAGCTTCTTCTGGCTGATGAGGGGG
TTCACTTCGACCAAGGCAACTGAGCTGTTGGCGGAAAGAGGGGTACGGTA
CGCCGGGCCTCGGCCAGCGTCGCACACGTCCACCTACACGGGGTCGCCGT
TCTTCTCTTCCGGCCGAGGCATCACCAACCTCCTCAGCTCAGTTTCCGCC
AACGGCCGCGTCGGCGACAGATTCGTCCTTTGCTTCTCCGACGGCGTGGA
CGCCTGTGCGCAGATGATCACCGGGTGCCTCGTAGCGACCGGCGGCAGCG
GCGACTTTCGCACCGGCAGCGGCGACCACGACGACAACACCTACCACCTC
GGGGGAAGCTCGCCACCCCCGTGCTCCGCCATCATATTCGGAGAGAGCTG
CGAGCGGGCGGGTAGACCAGGGGGGGAGAGGGACGGGATCAACGGGGCCG
GCGCTCGGGTGTTGACTGTGTTGGACTGGGTGGGCGTCTACGGGGAGTGC
TCGGAGTCCCTCCTCTGCGCGTGGGTGTACCGAGGAGAGGCGCAGGCGAA
CCAAGTAGACGCCGCGCCATAG
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