prot_Ecto-sp13_S_contig6877.17848.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6877.17848.1
Unique Nameprot_Ecto-sp13_S_contig6877.17848.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length460
Homology
BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI)

HSP 1 Score: 661 bits (1706), Expect = 2.800e-231
Identity = 379/462 (82.03%), Postives = 403/462 (87.23%), Query Frame = 0
Query:    1 RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEAVAXRNXXXXXXXXXXXGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEFIVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRRSYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRADNNHSFPSSSPLPAAGVGRGSFASPATSAADXXXXXXXXGRR-RGGEGNAGRIGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLRSRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDAXXXXXXXX--GGLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKDGDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 459
            RATADKNAALRESRALRIEK+GLKDKLEEAGRKLDEL+AQQS+SAAAMEAVA RN           GPQQHTYPKPNSDSSSQ ATRGRRQQDFENHAE I DNGSA+APQV+ID S RQ QGRSSPP+LSVPTS GTTTQGDN+SS++RSYRAAPAEEAAEGQ LSSTNRPSSSTVF+RQ  A +PREGALKSTNGR DNNH+ PSSSPLPAAGVGR S ASPA     XXXXXXXX    R GEG+AGRIGGTQ VHR++T VSH+RGPN+  DGAGRRGQ DGTD+VDGGR GASGLR RS+LR PAGTDYSNDGSEAVRAAG SVDGSDDAGSKRKRAKRG+L+ D XXXXXXXX  GGLTDSL PPLLSGA TSSRLSHFD  N+RPGEK  QVQGKDGDST +GVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKC  N+
Sbjct:  293 RATADKNAALRESRALRIEKDGLKDKLEEAGRKLDELQAQQSDSAAAMEAVAARNSVAVPGGHNNNGPQQHTYPKPNSDSSSQVATRGRRQQDFENHAESIFDNGSANAPQVQIDNSPRQHQGRSSPPLLSVPTSLGTTTQGDNTSSVQRSYRAAPAEEAAEGQKLSSTNRPSSSTVFVRQAEAGLPREGALKSTNGRTDNNHNIPSSSPLPAAGVGRRSSASPAXXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGPNDVFDGAGRRGQRDGTDVVDGGRRGASGLRFRSRLRSPAGTDYSNDGSEAVRAAGGSVDGSDDAGSKRKRAKRGALEADXXXXXXXXXXXGGLTDSLPPPLLSGAATSSRLSHFDNGNSRPGEKSVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNE 754          
BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE)

HSP 1 Score: 547 bits (1409), Expect = 6.740e-188
Identity = 336/461 (72.89%), Postives = 351/461 (76.14%), Query Frame = 0
Query:    1 RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEAVAXRNXXXXXXXXXXXGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEFIVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRRSYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRADNNHSFPSSSPLPAAGVGRGSFASPATSAADXXXXXXXX-GRRRGGEGNAGRIGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLRSRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDAXXXXXXXXG-GLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKDGDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 459
            RATADKNAALRESRALRIEKEGLKDKLEEAGR    L+AQ+SE  AAMEAVA RN           GPQQHTYPKPNSDSSSQ ATRGRRQQDFE H E   DNGS++APQV+ID   RQQQGRSSPP LSV TS GTTTQG  SSSLRRSYR A AEEAAEGQ LSST+RPSS +V  RQ   E PREGALKSTNGR DNNHS PSSSP PAAGVGR + ASPATSA  XXXXXXXX  RR+GGEG+AGRIGGTQN+  D+TAVSHNRGPNN LDGA                                            RAA + VDGSDDAGSKRKRAK G L+ DA XXXXXXX  GLTDSLSPPLLSGATTSSRLSHFDA NNRPGE V QVQGK GDSTL+GVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND
Sbjct:  185 RATADKNAALRESRALRIEKEGLKDKLEEAGRXXXXLQAQRSELGAAMEAVAARNSAAVQGGHSNSGPQQHTYPKPNSDSSSQVATRGRRQQDFEKHPECTYDNGSSNAPQVQIDNFPRQQQGRSSPPSLSVHTSLGTTTQGGASSSLRRSYRVASAEEAAEGQKLSSTHRPSSKSVLSRQAEPESPREGALKSTNGRTDNNHSLPSSSPFPAAGVGRVASASPATSAXXXXXXXXXXTDRRKGGEGDAGRIGGTQNIDPDVTAVSHNRGPNNVLDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARVDVDGSDDAGSKRKRAKTGPLEADAAXXXXXXXXXGLTDSLSPPLLSGATTSSRLSHFDAGNNRPGEAV-QVQGKGGDSTLEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 644          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM0_ECTSI2.800e-23182.03PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZW7_9PHAE6.740e-18872.89PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..40
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 408..456
e-value: 9.2E-6
score: 35.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 371..459
e-value: 7.1E-7
score: 31.1
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 409..455
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 406..458
score: 8.573
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 403..455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6877contigEcto-sp13_S_contig6877:5085..7652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6877.17848.1mRNA_Ecto-sp13_S_contig6877.17848.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6877 5085..7652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6877.17848.1 ID=prot_Ecto-sp13_S_contig6877.17848.1|Name=mRNA_Ecto-sp13_S_contig6877.17848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEA
VAARNGAAVQGGQNNNGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEF
IVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRR
SYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRAD
NNHSFPSSSPLPAAGVGRGSFASPATSAADAGGGGGGNGRRRGGEGNAGR
IGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLR
SRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDA
AAAAAAGAGGLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKD
GDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVF
LCSKCSGND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD