mRNA_Ecto-sp13_S_contig6877.17848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6877.17848.1
Unique NamemRNA_Ecto-sp13_S_contig6877.17848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Match: D8LEM0_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM0_ECTSI)

HSP 1 Score: 661 bits (1706), Expect = 2.800e-231
Identity = 379/462 (82.03%), Postives = 403/462 (87.23%), Query Frame = 1 
Query:    1 RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEAVAXRNXXXXXXXXXXXGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEFIVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRRSYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRADNNHSFPSSSPLPAAGVGRGSFASPATSAADXXXXXXXXGRR-RGGEGNAGRIGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLRSRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDAXXXXXXXX--GGLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKDGDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 1377
            RATADKNAALRESRALRIEK+GLKDKLEEAGRKLDEL+AQQS+SAAAMEAVA RN           GPQQHTYPKPNSDSSSQ ATRGRRQQDFENHAE I DNGSA+APQV+ID S RQ QGRSSPP+LSVPTS GTTTQGDN+SS++RSYRAAPAEEAAEGQ LSSTNRPSSSTVF+RQ  A +PREGALKSTNGR DNNH+ PSSSPLPAAGVGR S ASPA     XXXXXXXX    R GEG+AGRIGGTQ VHR++T VSH+RGPN+  DGAGRRGQ DGTD+VDGGR GASGLR RS+LR PAGTDYSNDGSEAVRAAG SVDGSDDAGSKRKRAKRG+L+ D XXXXXXXX  GGLTDSL PPLLSGA TSSRLSHFD  N+RPGEK  QVQGKDGDST +GVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKC  N+
Sbjct:  293 RATADKNAALRESRALRIEKDGLKDKLEEAGRKLDELQAQQSDSAAAMEAVAARNSVAVPGGHNNNGPQQHTYPKPNSDSSSQVATRGRRQQDFENHAESIFDNGSANAPQVQIDNSPRQHQGRSSPPLLSVPTSLGTTTQGDNTSSVQRSYRAAPAEEAAEGQKLSSTNRPSSSTVFVRQAEAGLPREGALKSTNGRTDNNHNIPSSSPLPAAGVGRRSSASPAXXXXXXXXXXXXXXXXXRSGEGDAGRIGGTQIVHREVTTVSHSRGPNDVFDGAGRRGQRDGTDVVDGGRRGASGLRFRSRLRSPAGTDYSNDGSEAVRAAGGSVDGSDDAGSKRKRAKRGALEADXXXXXXXXXXXGGLTDSLPPPLLSGAATSSRLSHFDNGNSRPGEKSVQVQGKDGDSTPEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCRSNE 754
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BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Match: A0A6H5KZW7_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW7_9PHAE)

HSP 1 Score: 547 bits (1409), Expect = 6.740e-188
Identity = 336/461 (72.89%), Postives = 351/461 (76.14%), Query Frame = 1 
Query:    1 RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEAVAXRNXXXXXXXXXXXGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEFIVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRRSYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRADNNHSFPSSSPLPAAGVGRGSFASPATSAADXXXXXXXX-GRRRGGEGNAGRIGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLRSRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDAXXXXXXXXG-GLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKDGDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 1377
            RATADKNAALRESRALRIEKEGLKDKLEEAGR    L+AQ+SE  AAMEAVA RN           GPQQHTYPKPNSDSSSQ ATRGRRQQDFE H E   DNGS++APQV+ID   RQQQGRSSPP LSV TS GTTTQG  SSSLRRSYR A AEEAAEGQ LSST+RPSS +V  RQ   E PREGALKSTNGR DNNHS PSSSP PAAGVGR + ASPATSA  XXXXXXXX  RR+GGEG+AGRIGGTQN+  D+TAVSHNRGPNN LDGA                                            RAA + VDGSDDAGSKRKRAK G L+ DA XXXXXXX  GLTDSLSPPLLSGATTSSRLSHFDA NNRPGE V QVQGK GDSTL+GVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND
Sbjct:  185 RATADKNAALRESRALRIEKEGLKDKLEEAGRXXXXLQAQRSELGAAMEAVAARNSAAVQGGHSNSGPQQHTYPKPNSDSSSQVATRGRRQQDFEKHPECTYDNGSSNAPQVQIDNFPRQQQGRSSPPSLSVHTSLGTTTQGGASSSLRRSYRVASAEEAAEGQKLSSTHRPSSKSVLSRQAEPESPREGALKSTNGRTDNNHSLPSSSPFPAAGVGRVASASPATSAXXXXXXXXXXTDRRKGGEGDAGRIGGTQNIDPDVTAVSHNRGPNNVLDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAARVDVDGSDDAGSKRKRAKTGPLEADAAXXXXXXXXXGLTDSLSPPLLSGATTSSRLSHFDAGNNRPGEAV-QVQGKGGDSTLEGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVFLCSKCSGND 644
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6877.17848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM0_ECTSI2.800e-23182.03PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZW7_9PHAE6.740e-18872.89PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6877contigEcto-sp13_S_contig6877:5085..7652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1380
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-23_002510.1
Cds size1380
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463944.3808036-CDS-Ecto-sp13_S_contig6877:5084..52911681463944.3808036-CDS-Ecto-sp13_S_contig6877:5084..5291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 5085..5291 -
1681463944.3923407-CDS-Ecto-sp13_S_contig6877:5829..68761681463944.3923407-CDS-Ecto-sp13_S_contig6877:5829..6876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 5830..6876 -
1681463944.4027598-CDS-Ecto-sp13_S_contig6877:7526..76521681463944.4027598-CDS-Ecto-sp13_S_contig6877:7526..7652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 7527..7652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6877.17848.1prot_Ecto-sp13_S_contig6877.17848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6877 5085..7652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6877.17848.1

>prot_Ecto-sp13_S_contig6877.17848.1 ID=prot_Ecto-sp13_S_contig6877.17848.1|Name=mRNA_Ecto-sp13_S_contig6877.17848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
RATADKNAALRESRALRIEKEGLKDKLEEAGRKLDELRAQQSESAAAMEA
VAARNGAAVQGGQNNNGPQQHTYPKPNSDSSSQAATRGRRQQDFENHAEF
IVDNGSASAPQVEIDTSSRQQQGRSSPPILSVPTSRGTTTQGDNSSSLRR
SYRAAPAEEAAEGQGLSSTNRPSSSTVFLRQVGAEIPREGALKSTNGRAD
NNHSFPSSSPLPAAGVGRGSFASPATSAADAGGGGGGNGRRRGGEGNAGR
IGGTQNVHRDLTAVSHNRGPNNALDGAGRRGQSDGTDIVDGGRTGASGLR
SRSKLRLPAGTDYSNDGSEAVRAAGISVDGSDDAGSKRKRAKRGSLDVDA
AAAAAAGAGGLTDSLSPPLLSGATTSSRLSHFDAANNRPGEKVAQVQGKD
GDSTLDGVCPSCGDTPYGLMINCSGCARQYHSSCVPDGQKVGKGLGATVF
LCSKCSGND*
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mRNA from alignment at Ecto-sp13_S_contig6877:5085..7652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6877.17848.1 ID=mRNA_Ecto-sp13_S_contig6877.17848.1|Name=mRNA_Ecto-sp13_S_contig6877.17848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2568bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6877:5085..7652- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCAACAGCTGACAAAAATGCTGCCCTTCGCGAGTCCCGCGCCTTGAG
GATCGAGAAGGAGGGGCTCAAGGACAAGCTGGAGGAAGCCGGGCGCAAGT
TGGACGAACTCCGAGCCCAGCAATCGGTGCGGAACAAGTGATAGTATCGT
GGCTTTAGTGTCTCTTTGGTTTGGTGTCAAAGACTGTTTTCGTTCACGGT
TGTGGAGAAAGCGTTGTTGTGTCTTCGATTTTCGCTTGTCGGTGACACTG
TCGGTCTTGCTTCCAAGGCTGTTGACGCTGTTCTCGTCTTTGCTCACTTT
GAGAGAATTTGATGCGCACGTTGGACTTGATATTGGGGGAAATTGTGATT
GTAATCCTGATGTTCTTGTCTTTGTATCCGCAACCCGAAGCAAGCACTGT
CGGTATTTCGGACCAATCCAACCAGCAGGAGACATCGGAATAATACCTGA
ACATCAACGCTCATGACTTCGCATAATTTGAATTCGAAATGGTTGTGACT
TGTGAACATGCCATCAACGGAAACCGCTACCAAACCTCATCGTGAAAGAG
GACACATGCTAAGCAACAAGGGCGTAGCCCGGGGTTTCAAACAAATTTTA
GCGGACGCCCACCGGAGGTTTTGTCCCACTTTCTTCGCTAAACGTTCCTG
CAAGAGCAGGTTAGCATTTCCTTTCTTCCTCGCCGCCATTGAAAACCGCT
CGATGGCAGGGCACCCTCGTTGTCAGTGTTCACCAAAGAATCCCTCTCGG
ACCGCGGGCTGTTATGTCTTTTTCAGGAGTCAGCTGCGGCGATGGAGGCC
GTGGCGGCCAGGAATGGCGCCGCCGTTCAAGGAGGGCAGAACAACAACGG
TCCGCAGCAACACACCTACCCGAAGCCCAACAGCGATAGCTCATCACAGG
CTGCCACTCGAGGCCGCCGCCAACAAGACTTCGAGAACCACGCGGAATTT
ATTGTCGACAACGGGAGCGCCAGCGCCCCACAGGTTGAGATCGACACCTC
CTCTCGGCAGCAGCAGGGGAGAAGCTCACCCCCGATATTGTCGGTCCCCA
CTAGTCGCGGCACCACCACGCAAGGGGATAACTCTTCTTCCCTCCGGCGC
TCTTACCGGGCGGCACCCGCCGAAGAAGCAGCAGAGGGACAAGGGTTGTC
GTCGACTAATCGACCCTCGAGCAGCACTGTTTTCTTACGCCAAGTAGGAG
CGGAAATCCCGCGCGAAGGCGCGCTCAAGTCGACGAACGGCCGCGCCGAC
AACAACCACAGTTTTCCTTCCTCTTCTCCCCTCCCGGCAGCCGGAGTGGG
TCGGGGTTCTTTCGCCAGCCCTGCCACGTCTGCTGCAGATGCCGGTGGCG
GCGGCGGCGGCAACGGCCGACGCAGAGGTGGGGAAGGTAATGCCGGCCGC
ATAGGTGGCACCCAGAACGTCCACCGTGACCTAACCGCTGTTTCGCACAA
CCGCGGCCCCAACAACGCCTTGGACGGAGCAGGAAGGCGGGGGCAAAGTG
ACGGAACCGATATTGTTGACGGCGGTCGAACGGGAGCTTCCGGCCTACGA
TCCCGCTCGAAGCTCCGCTTGCCAGCTGGTACCGACTACTCGAACGATGG
ATCGGAAGCTGTTCGTGCCGCTGGAATATCTGTGGACGGCTCTGACGATG
CCGGAAGCAAGCGGAAGAGAGCAAAGAGAGGCTCCTTGGACGTGGATGCT
GCTGCTGCAGCAGCAGCCGGCGCTGGGGGTTTGACGGATTCATTGTCCCC
TCCCCTGCTGTCTGGTGCGACTACATCGAGTCGCTTGAGCCACTTCGATG
CCGCAAACAACAGGCCCGGAGAGGTGAGTAACTGCGAATACCACATCATG
TTTGGAACCTGTCGAAAGATGTCATCCTATTGGGTGATGTAGTCGGTGAA
GTTGCAGCACACTTGGATTGTCGTTTGCATGTGCCGACACGTTCTGGCAG
CTCCCGAAAAGAGGAGCTGCATAGGTGAAAGCCTCCATTTATTAACACGA
AGGTATCTCTTCTGATGCATGTCCACTTGCGTTTCCTTTGGAAGTGCTCC
TCCCACACCCTCAGTTGAGAGAAGGAACAGTAACTCCCCGCGTGACTCAA
CGTCACCGACGCTCGAAAGCGCTCTTTGACCGCATCAACACTGTAACACC
ACGTGAATACACTCCGTGGACACTTGTCAGTCCAGGGCAACAGCATCACA
CGAACCTAAGGACTTGGACATGAAGTCTGCACATCTTTTTTAACGTTCAA
GATTTGACTTCCCTCGTGCACGCACCTGCTGCCCCAAAAAAAAACGGGAC
AGCTCCAATAATGTTCCCGGGCCAAATGTACTCGCGCACTTTCGTTTCGC
CTGTCAACAAGAAGGTAGCCCAAGTCCAGGGCAAGGATGGCGACTCCACC
CTCGACGGGGTTTGCCCCTCTTGCGGCGACACCCCATACGGCCTCATGAT
CAACTGCAGCGGCTGCGCTCGGCAGTACCACAGCTCCTGCGTTCCGGACG
GGCAGAAGGTGGGCAAGGGCCTGGGGGCAACTGTGTTCCTCTGCTCCAAA
TGCAGCGGCAACGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6877:5085..7652-

>mRNA_Ecto-sp13_S_contig6877.17848.1 ID=mRNA_Ecto-sp13_S_contig6877.17848.1|Name=mRNA_Ecto-sp13_S_contig6877.17848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6877:5085..7652- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCAACAGCTGACAAAAATGCTGCCCTTCGCGAGTCCCGCGCCTTGAG
GATCGAGAAGGAGGGGCTCAAGGACAAGCTGGAGGAAGCCGGGCGCAAGT
TGGACGAACTCCGAGCCCAGCAATCGGAGTCAGCTGCGGCGATGGAGGCC
GTGGCGGCCAGGAATGGCGCCGCCGTTCAAGGAGGGCAGAACAACAACGG
TCCGCAGCAACACACCTACCCGAAGCCCAACAGCGATAGCTCATCACAGG
CTGCCACTCGAGGCCGCCGCCAACAAGACTTCGAGAACCACGCGGAATTT
ATTGTCGACAACGGGAGCGCCAGCGCCCCACAGGTTGAGATCGACACCTC
CTCTCGGCAGCAGCAGGGGAGAAGCTCACCCCCGATATTGTCGGTCCCCA
CTAGTCGCGGCACCACCACGCAAGGGGATAACTCTTCTTCCCTCCGGCGC
TCTTACCGGGCGGCACCCGCCGAAGAAGCAGCAGAGGGACAAGGGTTGTC
GTCGACTAATCGACCCTCGAGCAGCACTGTTTTCTTACGCCAAGTAGGAG
CGGAAATCCCGCGCGAAGGCGCGCTCAAGTCGACGAACGGCCGCGCCGAC
AACAACCACAGTTTTCCTTCCTCTTCTCCCCTCCCGGCAGCCGGAGTGGG
TCGGGGTTCTTTCGCCAGCCCTGCCACGTCTGCTGCAGATGCCGGTGGCG
GCGGCGGCGGCAACGGCCGACGCAGAGGTGGGGAAGGTAATGCCGGCCGC
ATAGGTGGCACCCAGAACGTCCACCGTGACCTAACCGCTGTTTCGCACAA
CCGCGGCCCCAACAACGCCTTGGACGGAGCAGGAAGGCGGGGGCAAAGTG
ACGGAACCGATATTGTTGACGGCGGTCGAACGGGAGCTTCCGGCCTACGA
TCCCGCTCGAAGCTCCGCTTGCCAGCTGGTACCGACTACTCGAACGATGG
ATCGGAAGCTGTTCGTGCCGCTGGAATATCTGTGGACGGCTCTGACGATG
CCGGAAGCAAGCGGAAGAGAGCAAAGAGAGGCTCCTTGGACGTGGATGCT
GCTGCTGCAGCAGCAGCCGGCGCTGGGGGTTTGACGGATTCATTGTCCCC
TCCCCTGCTGTCTGGTGCGACTACATCGAGTCGCTTGAGCCACTTCGATG
CCGCAAACAACAGGCCCGGAGAGAAGGTAGCCCAAGTCCAGGGCAAGGAT
GGCGACTCCACCCTCGACGGGGTTTGCCCCTCTTGCGGCGACACCCCATA
CGGCCTCATGATCAACTGCAGCGGCTGCGCTCGGCAGTACCACAGCTCCT
GCGTTCCGGACGGGCAGAAGGTGGGCAAGGGCCTGGGGGCAACTGTGTTC
CTCTGCTCCAAATGCAGCGGCAACGACTGA
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