mRNA_Ecto-sp13_S_contig6877.17847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6877.17847.1
Unique NamemRNA_Ecto-sp13_S_contig6877.17847.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6877.17847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6877contigEcto-sp13_S_contig6877:4..3381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1242
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002515.1
Cds size1242
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6877.17847.1prot_Ecto-sp13_S_contig6877.17847.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6877 4..3381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463944.3010566-CDS-Ecto-sp13_S_contig6877:3..1911681463944.3010566-CDS-Ecto-sp13_S_contig6877:3..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 4..191 +
1681463944.3120782-CDS-Ecto-sp13_S_contig6877:725..10121681463944.3120782-CDS-Ecto-sp13_S_contig6877:725..1012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 726..1012 +
1681463944.3224611-CDS-Ecto-sp13_S_contig6877:1264..14831681463944.3224611-CDS-Ecto-sp13_S_contig6877:1264..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 1265..1483 +
1681463944.3328578-CDS-Ecto-sp13_S_contig6877:1854..19771681463944.3328578-CDS-Ecto-sp13_S_contig6877:1854..1977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 1855..1977 +
1681463944.345239-CDS-Ecto-sp13_S_contig6877:2342..26301681463944.345239-CDS-Ecto-sp13_S_contig6877:2342..2630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 2343..2630 +
1681463944.3538241-CDS-Ecto-sp13_S_contig6877:3244..33811681463944.3538241-CDS-Ecto-sp13_S_contig6877:3244..3381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6877 3245..3381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6877.17847.1

>prot_Ecto-sp13_S_contig6877.17847.1 ID=prot_Ecto-sp13_S_contig6877.17847.1|Name=mRNA_Ecto-sp13_S_contig6877.17847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
DGQEDQQHQNQGHSGHHQGRRRHLDIPVRRRGREPPRPTATSEDGSVGGW
QLHYSSTGLPFYYNGSTGESVWARGPTGTLVKTTGGDDRNSKSAGTGLPR
FSYEGHSDKSSASSGGSSGTSSTPSSSTGEGGVPRESGTSTSSSSETDST
SSASISLSGGSLQSDDDERKSSSSSSTESSDTSSSSGDSWTASMEMRFRR
MIVSEEGRKMLAGEVQALTTRQAKRTRRLPLGTETTRRSARRRRKSSTSS
SLTYPGEGEDVEMALLTEPHSAERRNGSRTRSRSNISSRGSGRGRSRSSS
RGSSSSGSSSSSSDRTESSFSLNISSGSYGGSDLSLLTSDLVLERLEKVE
KILTYSREAAFSIARSSYGFARHVSVVVWTAARRGVIRVRRFILSEDRLR
SQSPPSPFTPSAI*
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mRNA from alignment at Ecto-sp13_S_contig6877:4..3381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6877.17847.1 ID=mRNA_Ecto-sp13_S_contig6877.17847.1|Name=mRNA_Ecto-sp13_S_contig6877.17847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6877:4..3381+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGCAGGAGGATCAGCAGCATCAGAACCAGGGGCACAGTGGTCACCA
CCAAGGCCGAAGACGACACCTCGACATACCTGTTCGGCGTCGGGGAAGGG
AGCCACCAAGGCCGACAGCAACTTCCGAGGACGGCAGTGTTGGGGGCTGG
CAGCTCCATTATTCGTCAACGGGACTGCCTTTCTACTAGTACGTCCGTGT
GACTCATACTTGGGTTGTTGTCACGACATTCTTTTTCATGTACGAGAAAT
GGCCTGATGACTTGTGCACAGCAGTACAGTCTTCGGCATACTCTAGAGAA
AGAGACTACATTTGCTGGGCACTTTGAAGGGCACGGAAGAAAGGACATAC
AAGAAACATGTTGTATGGACACAAATCAGAACAGTTTTGATGTCAAGACA
ACGAAAATACCATGCAAGTTGTTGCTTCGTCGGGCCGATTGAATACGCGC
ATGTGCGTACGCTGGCCCGCCACATTGCCTGGTATCGCCAGGGTTCGGGT
GATCGCCCCGCAGTGTGTCATCCTTGCATCACACAGGCACCCCCGGTACG
GCGAAGTGTAGATCAGCATCAGCATCAACAATCACGACCCGTGCGCAGAC
AGAATGCTCTCCCGGCTGGACCCACCAAGTTCGGGTTCACTTAACTCTCG
ATCTAAATCGGTAGACTAAAATAGAGCACCAGCAAACAACTGTGATTTTG
TACATGTTTTTCTTTCGATCAGCAATGGCTCGACGGGAGAGTCTGTCTGG
GCACGTGGACCGACGGGAACTTTGGTCAAAACGACCGGCGGCGATGACCG
CAATAGCAAGAGCGCGGGCACCGGCCTGCCGCGTTTCTCATATGAGGGCC
ACAGCGACAAGAGCAGCGCAAGCTCCGGCGGCAGCTCGGGCACGTCCTCG
ACACCGTCTTCGTCTACCGGAGAAGGAGGAGTGCCACGTGAAAGTGGAAC
GTCGACGAGCTCTTCGTCGGAGACTGATTCGACTTCCTCTGCGTCGATCT
CATTGTCGGGTGAGCCTGCTGTAGTGAAAATTGCGTAGACCAGGTGGACC
AAGCCAGCGGAATGGAGACCCTAGCCTGCCGTTTCCTTGGCCGATCTATC
AGGGTCTTTTTCACCAATTTTGCACGAATTGGGCAGCCTCATGGAGGGTT
ATCGGTGTCCATTGACCTTCTTTCTCGTCGACACTATGCTGACGGGTATC
CAGCCCCAACGCCTGTCCCTGTCCTTATCAACAATCCCGCTTAACTAACC
TGAATATCAAGGAGGCTCCCTCCAAAGCGACGATGATGAGAGAAAATCTT
CATCTTCCTCCTCAACGGAGTCGTCTGACACATCTTCGTCGAGCGGAGAT
AGCTGGACGGCATCGATGGAGATGAGATTCCGACGAATGATTGTTTCTGA
GGAAGGCCGGAAGATGCTGGCGGGCGAGGTTCAAGCCCTCACCACGCGGC
AAGCTAAGCGTACCCGACGGCTCCCACTAGGTAGGGGTGAGCGAACTACC
TGCATCATTTTGCACATGTCCCACAGTTGCCTAGCCCGTGGCCCGGCCAT
TTTTCTACGGGTGCCTTTCCGTTGTAGTGATACCACAGCAGGGTTCCAAG
AGAGGCGAGGAGGAGGCTCGACACTTGCAAGTAACGATGTTCGACGGGAA
CACTACAATACTCTACAGCAGAGCAAGGAGAGCGTGTCAAGAGTAATGCG
ACTGGAATGAGGAAGAGAAATCCAAAAGCCTCGATTGTCCAGCCCACATC
TGCAAAATATGTGCAGTTTTTTTCACTTGTCCTTCCTCACGCGCTATCAG
CTGGTGCAAAGTTCTGAACATGGTGATCATTCTCCCGCTTGTTTATCCAA
GGGACTGAGACAACAAGAAGATCTGCGAGGAGGAGAAGGAAGAGCAGCAC
GTCGTCCTCGCTTACGTACCCTGGCGAGGGAGAAGACGTTGAAATGGCTC
TACTCACCGAACCGCACAGTGCTGGTGAGTGAAAGGCTACACGTAGGGTG
TTTTTGAACGAACAACAAGAGGTGGAGATAGTAGCACATCTCGTTGAACT
GAATGATGGTTTATCGGACATTGTTTGTGCCGAGCTTTCGCCCCCCTCCT
CGCCGTGATTTTTGCGAAGGTTTCGTGTCGCGAGCGGTGAAAATGGTGGT
ACTGTTCAAGCCGATCAGAGGTGTAGTTCTAGTTGCGTCGGTCATAACGG
ATTGCTGCCCAATGACAGTGCAGAAACAGCAGTATCAACGTCGATTGTCT
GAGGAGACAACTATTCTTCTTCACCGACCGTTGTTCTCATAAGGTTTTCT
TTTCCGGCCCTACGTTTGCCCCGTCCTGTCACCATTTAGAGAGAAGAAAT
GGTAGCCGCACCCGGAGCAGAAGCAACATCAGCAGTAGGGGCAGCGGCAG
GGGCAGAAGCAGAAGTAGTAGCAGGGGGAGCAGCAGCAGTGGCAGCAGCA
GCAGCAGTAGCGATAGGACCGAATCATCCTTCTCGCTGAATATTAGCAGT
GGCAGCTACGGAGGGAGCGACCTGTCTCTATTAACAAGTGATCTTGTCCT
CGAGAGGCTCGAGAAAGTGGAGAAGATTTTGACCTATTCGCGGGAGGCTG
CATTTTCCATTGCCCGTTCCTCGTACGGTAAGCACGAAGATATCAAGCAC
GTATAGAAACATGAACAGGACGCCAGTTGTTTCGCTGTTTGTCGTTATTT
TCGTTTCGCTGGTGATCCGTGCGCAAGATGAATCCCGATGGCATCCAACG
GGGCGACGGTTGTTGCTAGCAGTCAACAATACCCTACATGCCAACGGGGT
CCACACATGTGAAAAATGCATGCAAGCCACTAGAATCCAACAAAACAGTG
TAGAGGCATAGTCGGCAATACACGAAAACAAGTACGGCTTCTGAAGAGTC
TCGATTTAAGCGCTGGCTCTTGTGACAAGCTTGAAAATGTTCACCCATCA
ATATTGGCAACCACCCTTTCCTACGTACCTTCCCTCCCACCTTGGAACAC
TCCCGCCTAAATGACCGAGATGGTCCCATTTTTTCGAGAGTGAAAACATC
CATATGGCCACCACGCCTTCCCACCGCACATCGCTCGCCCACCTACCCCA
CCCTTAAGGTCCTCGCCTCTGTCCCTTTTCCTGCACCATCTCGAAAACGT
GTTGCGTAGTCTGTGGTAAAAATGCTTTCAGGGAAGCGAAAATTTTAGTA
ATGCATATATTGGTTCACTGTCCGTACCCTCGCCGTATCAGGGTTTGCGA
GGCACGTGTCCGTCGTGGTGTGGACCGCGGCAAGGCGAGGGGTGATCCGC
GTACGGAGATTCATCCTCTCAGAAGATCGTCTCAGGTCACAATCTCCCCC
ATCTCCATTTACACCATCCGCGATCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6877:4..3381+

>mRNA_Ecto-sp13_S_contig6877.17847.1 ID=mRNA_Ecto-sp13_S_contig6877.17847.1|Name=mRNA_Ecto-sp13_S_contig6877.17847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6877:4..3381+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGCAGGAGGATCAGCAGCATCAGAACCAGGGGCACAGTGGTCACCA
CCAAGGCCGAAGACGACACCTCGACATACCTGTTCGGCGTCGGGGAAGGG
AGCCACCAAGGCCGACAGCAACTTCCGAGGACGGCAGTGTTGGGGGCTGG
CAGCTCCATTATTCGTCAACGGGACTGCCTTTCTACTACAATGGCTCGAC
GGGAGAGTCTGTCTGGGCACGTGGACCGACGGGAACTTTGGTCAAAACGA
CCGGCGGCGATGACCGCAATAGCAAGAGCGCGGGCACCGGCCTGCCGCGT
TTCTCATATGAGGGCCACAGCGACAAGAGCAGCGCAAGCTCCGGCGGCAG
CTCGGGCACGTCCTCGACACCGTCTTCGTCTACCGGAGAAGGAGGAGTGC
CACGTGAAAGTGGAACGTCGACGAGCTCTTCGTCGGAGACTGATTCGACT
TCCTCTGCGTCGATCTCATTGTCGGGAGGCTCCCTCCAAAGCGACGATGA
TGAGAGAAAATCTTCATCTTCCTCCTCAACGGAGTCGTCTGACACATCTT
CGTCGAGCGGAGATAGCTGGACGGCATCGATGGAGATGAGATTCCGACGA
ATGATTGTTTCTGAGGAAGGCCGGAAGATGCTGGCGGGCGAGGTTCAAGC
CCTCACCACGCGGCAAGCTAAGCGTACCCGACGGCTCCCACTAGGGACTG
AGACAACAAGAAGATCTGCGAGGAGGAGAAGGAAGAGCAGCACGTCGTCC
TCGCTTACGTACCCTGGCGAGGGAGAAGACGTTGAAATGGCTCTACTCAC
CGAACCGCACAGTGCTGAGAGAAGAAATGGTAGCCGCACCCGGAGCAGAA
GCAACATCAGCAGTAGGGGCAGCGGCAGGGGCAGAAGCAGAAGTAGTAGC
AGGGGGAGCAGCAGCAGTGGCAGCAGCAGCAGCAGTAGCGATAGGACCGA
ATCATCCTTCTCGCTGAATATTAGCAGTGGCAGCTACGGAGGGAGCGACC
TGTCTCTATTAACAAGTGATCTTGTCCTCGAGAGGCTCGAGAAAGTGGAG
AAGATTTTGACCTATTCGCGGGAGGCTGCATTTTCCATTGCCCGTTCCTC
GTACGGGTTTGCGAGGCACGTGTCCGTCGTGGTGTGGACCGCGGCAAGGC
GAGGGGTGATCCGCGTACGGAGATTCATCCTCTCAGAAGATCGTCTCAGG
TCACAATCTCCCCCATCTCCATTTACACCATCCGCGATCTAG
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