mRNA_Ecto-sp13_S_contig6876.17846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6876.17846.1
Unique NamemRNA_Ecto-sp13_S_contig6876.17846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6876.17846.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.500e-46
Identity = 116/179 (64.80%), Postives = 121/179 (67.60%), Query Frame = 1 
Query:    1 VQQRIATLQDVLDESDGGFSAAPLRVEEEDFADASLQGKGGKGKQPARAPRMEDETADQXXXXXXXXXXXXXDYDAGGREEGDSEKEEGGVQQNEVRMVPWKYEALEKEVILQVVLERLGDRIYGKEFSCGKGYQYEQCYSRVAHYVKIELAKNKANMQTHGSLLKERFGRGEMNHLRD 537
            V+QRIATLQDVLDE DGG SAAPLR E  DFADASLQG+ GKGK+PARAPRMEDETA Q XXXXXXXXXXXX                GGVQQN+                             GKEFSCGKGYQYEQ YSRVA YVKIELAKNKA MQTHGSLL+ERFGR EM HLRD
Sbjct:  221 VKQRIATLQDVLDEPDGGSSAAPLRAEVGDFADASLQGRSGKGKRPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVQQNK-----------------------------GKEFSCGKGYQYEQWYSRVAQYVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 370
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BLAST of mRNA_Ecto-sp13_S_contig6876.17846.1 vs. uniprot
Match: D7FH42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH42_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.230e-36
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:  301 WKYEALEKEVILQVVLERLGDRIYGKEFSCGKGYQYEQCYSRVAHYVKIELAKNKANMQTHGSLLKERFGRGEMNHLRD 537
            WKYE +EKEVILQVVLERLGDRIYGKEFSCGKGY +EQ YSRVAHYVKIELAKNK  MQTHGSLL+ERF R EM HLRD
Sbjct:   66 WKYETVEKEVILQVVLERLGDRIYGKEFSCGKGYGHEQWYSRVAHYVKIELAKNKVYMQTHGSLLEERFARAEMQHLRD 144
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BLAST of mRNA_Ecto-sp13_S_contig6876.17846.1 vs. uniprot
Match: D7G1M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.560e-23
Identity = 72/149 (48.32%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:   88 DFADASLQGKGGKGKQPARAPRMEDETADQXXXXXXXXXXXXXDYDAGGREEGDSEKEEGGVQQNEVRMVPWKYEALEKEVILQVVLERLGDRIYGKEFSCGKGYQYEQCYSRVAHYVKIELAKNKANMQTHGSLLKERFGRGEMNHLR 534
            D ADA+LQG  GKGKQPARAPRME+ETA Q                   R E    +  G        M  W   +            RL    +   F CGKGY YEQ YSRVAH+VKIELAKNK  M+THGSLL+ERFGR EM HLR
Sbjct:   44 DSADAALQG--GKGKQPARAPRMENETAGQDTLKRN-------------RVESSRTRSPGN-------MTRWSRRSS----------YRLSSSAWATGFICGKGYGYEQWYSRVAHHVKIELAKNKGYMKTHGSLLEERFGRAEMQHLR 160
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BLAST of mRNA_Ecto-sp13_S_contig6876.17846.1 vs. uniprot
Match: A0A6H5K6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.220e-17
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:  373 GKEFSCGKGYQYEQCYSRVAHYVKIELAKNKANMQTHGSLLKERFGRGEMNHLRD 537
            GK+FSCGKGY +EQ YSRV H+VKI+LAKN  +MQTHGSLL ERFGR  M HLRD
Sbjct:    6 GKKFSCGKGYGHEQRYSRVVHHVKIQLAKNNTSMQTHGSLLNERFGRAGMKHLRD 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6876.17846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRU9_9PHAE3.500e-4664.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH42_ECTSI5.230e-3686.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1M7_ECTSI2.560e-2348.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6J2_9PHAE2.220e-1774.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6876contigEcto-sp13_S_contig6876:1146..3677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size537
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005650.1
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463944.2465374-CDS-Ecto-sp13_S_contig6876:1145..14401681463944.2465374-CDS-Ecto-sp13_S_contig6876:1145..1440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6876 1146..1440 +
1681463944.2614808-CDS-Ecto-sp13_S_contig6876:2354..24311681463944.2614808-CDS-Ecto-sp13_S_contig6876:2354..2431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6876 2355..2431 +
1681463944.2743893-CDS-Ecto-sp13_S_contig6876:3512..36771681463944.2743893-CDS-Ecto-sp13_S_contig6876:3512..3677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6876 3513..3677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6876.17846.1prot_Ecto-sp13_S_contig6876.17846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6876 1146..3677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6876.17846.1

>prot_Ecto-sp13_S_contig6876.17846.1 ID=prot_Ecto-sp13_S_contig6876.17846.1|Name=mRNA_Ecto-sp13_S_contig6876.17846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
VQQRIATLQDVLDESDGGFSAAPLRVEEEDFADASLQGKGGKGKQPARAP
RMEDETADQDEEEEEDEEEAEEDYDAGGREEGDSEKEEGGVQQNEVRMVP
WKYEALEKEVILQVVLERLGDRIYGKEFSCGKGYQYEQCYSRVAHYVKIE
LAKNKANMQTHGSLLKERFGRGEMNHLRD
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mRNA from alignment at Ecto-sp13_S_contig6876:1146..3677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6876.17846.1 ID=mRNA_Ecto-sp13_S_contig6876.17846.1|Name=mRNA_Ecto-sp13_S_contig6876.17846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6876:1146..3677+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCAGCAGAGAATCGCCACACTCCAAGATGTCCTAGACGAGTCGGATGG
AGGTTTCTCCGCGGCACCCTTGCGTGTGGAGGAAGAGGACTTTGCGGATG
CATCGCTCCAGGGTAAGGGCGGCAAGGGCAAGCAACCCGCGCGTGCCCCG
CGCATGGAGGACGAGACAGCCGACCAAGACGAGGAGGAGGAAGAAGACGA
GGAGGAAGCTGAGGAAGATTATGATGCGGGTGGCCGTGAAGAGGGAGACT
CTGAAAAGGAAGAGGGTGGAGTCCAGCAGAACGAGGTAAGAATGGGTTCT
ACATTGTGTCATATGAAGGTGATCTATGCGGCCGATATTTTGGCGGTGTT
TAAATTTTGAATTCTGGAGCGCTTTATTACACTTGAAACAAATGTGTCCT
GTACCCTGTACCAAAAACATGCATGTGGAAACTACTCGCGTGGACACTGT
TCTGAACGACATATTGTATCACCTCCGTTCTAGTGGTATACTACACCCGG
TATTTTGATTGCTGTATTGTTTCAGTAATTGAATTAAGTGTTTACAATTT
TCAAGGTTTGAACCAACACTCACCTACGCTGTGTCTCGGATCCCAACTGG
TTGCCACTCTGTCGTCAGTCTGTGCATTCTGTGTGTGTATTTTTTTTTCG
GCTTAATCCGTTCACACGGCGGCATGTTTGGCCACCTCCTCCTTGTCCGT
ACATCTGTTGCAAACATATCCTATATCATAGTGTGGGTAGGGTATCAGCA
GCGTCTTGTAGCATTCGTTTGGTGTCCCGGTTGAAAGATCCTATCATCTC
CGGCCTGCTACTGTAGGGATTACGGACCCCCCCCCCCCCCCCCCCCCCCC
CTTCCTTCTTTTTTTTTTTGTTTTTTTTGTGTGTGGCTCGGGGTGTTTTT
TTTTTTTTGTTTNNNNNNNNNNAAAACCCCCCCCCCCCCCGCCCGTTCCC
TTTGGGGCTTCGGGCCCCCCCCCCCCCCCCCGGCACTTTAGCCATTAATG
CTGCGGTGTTGTGAAGGGCCCGCGGCGGTGATTGCCTTTCAGATGCCACC
AGATTGAAACCACAGATATGTTCACGAGATTGTGCTGTACGTGCCGCACA
TGAAGAGAGCAATGGTGCCTACAACTCCCTGGCGCTTGTCTCGCTACTAT
GCACCTCGCTCCATTTTAATCTTACACTGTTGTCTGCCTTTGGTGTGGGA
TTGCCGGAGTCCCCTGGAAGTATGAGGCTCTGGAGAAGGAGGTCATCCTA
CAGGTTGTCCTTGAGCGTTTGGGAGACAGGATTTATGTGAGTTCGGCACT
AGAGGGTAGATAGCGTCTACAAAACTTGTGCCATGTTATTAAGAACGGGT
TTGTGAGTGCTGTTTTGAATTTCAAGGGTTGCCGTAAGGATAAGTAAACC
GGGTGCTATCGAAGATGATTTCTTTTTTTCTAGCCTTGCTTCTCGCTCCG
TGGTACCGTCTCTCCGACCTGTGCGACTCCCGATGAAATAGACTCTTACG
TATCCCCTGGGGCTAAGGCCGTCTTAGAATACGTTCCCGGAACGGTCTTA
CGCAATGTTGCGGTTAATAGGTACATTTACATTCATCCCGAATCTACTGC
ACTATACTAGGCAAATGCAGCAACGGACATTCTCACGCGGTATGTTCGTT
CGCGGTTGAAACCCAGGAGTTTGGCCCTGTCCATACCCTAACCAGATGGG
TGTAAGGGTTGGCCGGGTATAACAGGGGTAGCAGCTCATTTAATGCCCCG
TGCCCACTTGCAAGAACCCCAGTCGCGGACTCGGGGTGACTCATCGCACT
CGGTGCACGCTGCGGGCTCAGTGCAACGAAAAGGTTTGATCGTGTCTTTG
AGCGCAACCTGATGCCATGTCTACGACCCCCCCTTCCTTTCATATTTCTG
TATATTACAAAACGTCCCGGGTTACCATTAGTACGTCCTAATGTCTGCAC
TGATCCAAGATCCGCGGATGCCTTCTGTGGTGACACGCATTTATATACTA
AAGGGCCGTACACCTGTCTATAAATAGATAACAAACGTAAAAATGATGGT
CTACAAAATTTGTTACCCAAACGATCGACCCCTGTCAAGAAAGAATGAAA
GCAAGCAAGGAAAAAAGAGACACTGGAAGGAAACAATATGGAAGAGGGAC
AGGTGGGTTGTCCAGTGCTCCATACAAGATCTACAACAGGCACTGGAATC
CTCGATCATGTGGTGGAACTGTCGGCGCAACGAGGTTAGCGTCCGCATTG
GCACAATGATTCGCGTGACTCTATGTATGGTCTGACGACTTTAATCTCAA
GCTAAATTTTGCGCTGTGTGCTCTGCTCCGCGCTGACATCGCAAACCCGA
ACGTCGTATCGTCACAGGGGAAAGAGTTCAGTTGCGGCAAGGGCTACCAA
TACGAACAGTGTTACTCTCGGGTCGCGCATTACGTCAAGATCGAGCTGGC
CAAGAACAAGGCTAACATGCAGACCCACGGATCTCTTCTGAAGGAACGCT
TCGGGAGGGGGGAGATGAACCACCTCAGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6876:1146..3677+

>mRNA_Ecto-sp13_S_contig6876.17846.1 ID=mRNA_Ecto-sp13_S_contig6876.17846.1|Name=mRNA_Ecto-sp13_S_contig6876.17846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6876:1146..3677+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCAGCAGAGAATCGCCACACTCCAAGATGTCCTAGACGAGTCGGATGG
AGGTTTCTCCGCGGCACCCTTGCGTGTGGAGGAAGAGGACTTTGCGGATG
CATCGCTCCAGGGTAAGGGCGGCAAGGGCAAGCAACCCGCGCGTGCCCCG
CGCATGGAGGACGAGACAGCCGACCAAGACGAGGAGGAGGAAGAAGACGA
GGAGGAAGCTGAGGAAGATTATGATGCGGGTGGCCGTGAAGAGGGAGACT
CTGAAAAGGAAGAGGGTGGAGTCCAGCAGAACGAGGTAAGAATGGTCCCC
TGGAAGTATGAGGCTCTGGAGAAGGAGGTCATCCTACAGGTTGTCCTTGA
GCGTTTGGGAGACAGGATTTATGGGAAAGAGTTCAGTTGCGGCAAGGGCT
ACCAATACGAACAGTGTTACTCTCGGGTCGCGCATTACGTCAAGATCGAG
CTGGCCAAGAACAAGGCTAACATGCAGACCCACGGATCTCTTCTGAAGGA
ACGCTTCGGGAGGGGGGAGATGAACCACCTCAGGGAC
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