mRNA_Ecto-sp13_S_contig6874.17840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6874.17840.1
Unique NamemRNA_Ecto-sp13_S_contig6874.17840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6874.17840.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 6.500e-52
Identity = 99/124 (79.84%), Postives = 107/124 (86.29%), Query Frame = 1 
Query:    1 GTGNHISDGLPSHGLQEVDEERRGGGDKGTEPLDPEAEPATRKPEDAANRDWSDDEGSAGLHCRKGAGNANLSTELGDSNEHEMADPTTQTGVIIGQTAEGFTAAFDTQDIHTALGSDSGSTAS 372
            G GNHISDGLPSHGL+EV E+RRGG D+GTEPLD EAEPAT KPEDA NRDWSDDEGSAGLHC  GAG+ANLS + GDS+EHEMADPTT TGVII + AEG TAA D +DI TALGSDSGSTAS
Sbjct: 2438 GAGNHISDGLPSHGLKEVAEQRRGGRDEGTEPLDTEAEPATSKPEDAGNRDWSDDEGSAGLHCTNGAGDANLSIKPGDSHEHEMADPTTPTGVIIERNAEGSTAAVDVRDIRTALGSDSGSTAS 2561
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BLAST of mRNA_Ecto-sp13_S_contig6874.17840.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 3.520e-45
Identity = 97/124 (78.23%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    1 GTGNHISDGLPSHGLQEVDEERRGGGDKGTEPLDPEAEPATRKPEDAANRDWSDDEGSAGLHCRKGAGNANLSTELGDSNEHEMADPTTQTGVIIGQTAEGFTAAFDTQDIHTALGSDSGSTAS 372
            GTGNHI DGLPSHGLQEV EERRGGGD+GTEPLD EAE A  KPEDA NRD SDDEGSAG        +ANLS E GDSNEHEMADP TQTGVII QTAEG  AA D QDIHT LGSDSGSTAS
Sbjct: 1914 GTGNHIFDGLPSHGLQEVAEERRGGGDEGTEPLDTEAEFAITKPEDAGNRDGSDDEGSAG--------DANLSIEPGDSNEHEMADPATQTGVIIEQTAEGSMAAVDVQDIHTGLGSDSGSTAS 2029
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6874.17840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KND4_9PHAE6.500e-5279.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM25_ECTSI3.520e-4578.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6874contigEcto-sp13_S_contig6874:815..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size376
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.875072-CDS-Ecto-sp13_S_contig6874:814..11891681463943.875072-CDS-Ecto-sp13_S_contig6874:814..1189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6874 815..1189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6874.17840.1prot_Ecto-sp13_S_contig6874.17840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6874 815..1189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6874.17840.1

>prot_Ecto-sp13_S_contig6874.17840.1 ID=prot_Ecto-sp13_S_contig6874.17840.1|Name=mRNA_Ecto-sp13_S_contig6874.17840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
GTGNHISDGLPSHGLQEVDEERRGGGDKGTEPLDPEAEPATRKPEDAANR
DWSDDEGSAGLHCRKGAGNANLSTELGDSNEHEMADPTTQTGVIIGQTAE
GFTAAFDTQDIHTALGSDSGSTASP
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mRNA from alignment at Ecto-sp13_S_contig6874:815..1190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6874.17840.1 ID=mRNA_Ecto-sp13_S_contig6874.17840.1|Name=mRNA_Ecto-sp13_S_contig6874.17840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6874:815..1190+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTACAGGAAATCACATTTCTGATGGATTGCCAAGCCATGGATTGCAAGA
AGTGGATGAAGAAAGACGCGGTGGTGGGGACAAAGGAACGGAACCTCTCG
ATCCTGAAGCCGAGCCTGCCACTAGGAAGCCTGAGGATGCGGCGAATCGC
GATTGGAGTGATGATGAAGGAAGCGCAGGGCTTCACTGCAGGAAGGGCGC
AGGAAACGCAAATCTCAGCACAGAACTTGGCGATTCCAACGAGCACGAGA
TGGCTGACCCTACTACACAAACAGGCGTCATCATTGGGCAAACCGCCGAA
GGTTTCACGGCCGCTTTTGATACGCAAGACATACATACAGCTTTGGGAAG
TGATAGTGGTAGCACCGCCTCACCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6874:815..1190+

>mRNA_Ecto-sp13_S_contig6874.17840.1 ID=mRNA_Ecto-sp13_S_contig6874.17840.1|Name=mRNA_Ecto-sp13_S_contig6874.17840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6874:815..1190+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTACAGGAAATCACATTTCTGATGGATTGCCAAGCCATGGATTGCAAGA
AGTGGATGAAGAAAGACGCGGTGGTGGGGACAAAGGAACGGAACCTCTCG
ATCCTGAAGCCGAGCCTGCCACTAGGAAGCCTGAGGATGCGGCGAATCGC
GATTGGAGTGATGATGAAGGAAGCGCAGGGCTTCACTGCAGGAAGGGCGC
AGGAAACGCAAATCTCAGCACAGAACTTGGCGATTCCAACGAGCACGAGA
TGGCTGACCCTACTACACAAACAGGCGTCATCATTGGGCAAACCGCCGAA
GGTTTCACGGCCGCTTTTGATACGCAAGACATACATACAGCTTTGGGAAG
TGATAGTGGTAGCACCGCCTCACCT
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