prot_Ecto-sp13_S_contig6871.17836.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6871.17836.1
Unique Nameprot_Ecto-sp13_S_contig6871.17836.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length504
Homology
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 775 bits (2000), Expect = 5.440e-263
Identity = 456/499 (91.38%), Postives = 462/499 (92.59%), Query Frame = 0
Query:    1 SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTKKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KATFRHDQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKARLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 498
            SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDK+LIAAPKSW+DIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMH+EK           DLLP+ESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIE             RELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK EK     XXXXXXXXX    X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KATFRH+QFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAK RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWA+LSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV
Sbjct:  485 SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKVLIAAPKSWEDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHREK-----------DLLPLESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIER------------RELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTKSEKERSSQXXXXXXXXXGKFFXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATFRHNQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKGRLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWAHLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 960          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 7.010e-100
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0
Query:  325 MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKARLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 498
            MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAK RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWA+LSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV
Sbjct:    1 MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKGRLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWAHLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 174          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.470e-35
Identity = 100/270 (37.04%), Postives = 143/270 (52.96%), Query Frame = 0
Query:    3 ILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSS-------------------SRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREP 253
            + +R N+ +MA +K +RL SAA  TG+  +     K    +  +R V + PP HA PA +K+L+  P+  +++R   RPR  +  LL +   ++      KA   GGQ          E+V++       RT        DL+P E  + F++VEYVEERPPLL +TGMAS +I + RS+                   +R+   G E          G+ + L PQE+SPF+GEIR G  Q SICN L+RAP+F+H A D+DFLLIREP
Sbjct:  123 LTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRP-EEVRAFRRPR--VARLLSSGQRLLLKSLGAKAA--GGQM---------EMVTL----RGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREP 374          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: G7K6S4_MEDTR (Transcription initiation factor TFIID protein, putative n=3 Tax=Medicago truncatula TaxID=3880 RepID=G7K6S4_MEDTR)

HSP 1 Score: 86.7 bits (213), Expect = 4.530e-14
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP LL + GM + + T+ + SS     G    RN+ ++  G    L P + SPFLG+++PGS Q+S+   ++RAP+F H  P +D+LL+R P  K
Sbjct:  775 LMEYCEERPLLLSNVGMGARLCTYYQKSSPDDHSGAALLRNTDSS-LGHIISLDPADKSPFLGDLKPGSSQSSLETNMYRAPVFAHKVPPTDYLLVRSPKGK 875          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A2K1JX46_PHYPA (Bromo domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX46_PHYPA)

HSP 1 Score: 86.3 bits (212), Expect = 6.090e-14
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVR--SSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP LLG+ GM   + T+ R  SS+      + A R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAPIF H    +DFLL+R P  K
Sbjct:  813 LMEYCEERPLLLGNVGMGGRLFTYYRKRSSTDATAATLRAERGPWV---GITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPIFPHKVATTDFLLVRSPKGK 913          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A7I4APP2_PHYPA (Ubiquitin-like domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4APP2_PHYPA)

HSP 1 Score: 85.9 bits (211), Expect = 7.530e-14
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAG-RNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP +LG+ GM S + T+ R   R P     A  R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAP+F H    +DFLL+R P  K
Sbjct:  809 LMEYCEERPLVLGNVGMGSRLYTYYRK--RTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVATTDFLLVRSPKGK 909          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A2K1JG16_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG16_PHYPA)

HSP 1 Score: 85.9 bits (211), Expect = 8.060e-14
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAG-RNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP +LG+ GM S + T+ R   R P     A  R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAP+F H    +DFLL+R P  K
Sbjct:  809 LMEYCEERPLVLGNVGMGSRLYTYYRK--RTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVATTDFLLVRSPKGK 909          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A6I9TST8_SESIN (transcription initiation factor TFIID subunit 1 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TST8_SESIN)

HSP 1 Score: 83.2 bits (204), Expect = 5.640e-13
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGR--NSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP LLG+ GM + + T+ + S+     G + G    +G  G G    L P + SPFLG+I+PGS Q+ +   ++RAPIF+H  P +D+LL+R    K
Sbjct:  790 LMEYCEERPLLLGNAGMGARLCTYYQKSAP----GDQTGNLLRNGNNGLGSVIILDPADKSPFLGDIKPGSSQSCLETNMYRAPIFQHKVPSTDYLLVRSSKGK 889          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A392P3L6_9FABA (Transcription initiation factor TFIID subunit 1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P3L6_9FABA)

HSP 1 Score: 77.8 bits (190), Expect = 6.650e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0
Query:  156 VEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            + Y EERP LL + GM + + T+ + SS     G    RN+ ++  G    L P + SPFLG+++PGS Q+S+   ++RAPIF H  P +D+LL+R    K
Sbjct:    1 LRYCEERPLLLSNVGMGARLCTYYQKSSPDDQSGSLL-RNTDSS-LGHIISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPTDYLLVRSSKGK 99          
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A4D8YNZ6_SALSN (Transcription initiation factor TFIID subunit 1 n=5 Tax=Salvia TaxID=21880 RepID=A0A4D8YNZ6_SALSN)

HSP 1 Score: 82.4 bits (202), Expect = 9.850e-13
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 0
Query:  155 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGR--NSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 256
            ++EY EERP LLG+ GM + + T+ +  +     G + G    +G  G G    L P + SPFLG+I+PG+ Q+ + + ++RAPIF+H  P +D+LL+R P  K
Sbjct:  785 IMEYCEERPLLLGNPGMGARLCTYYQKLAP----GDQMGNLMRNGDNGLGSVVTLDPADKSPFLGDIKPGASQSCLESNMYRAPIFQHKVPLTDYLLVRSPKGK 884          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW7_ECTSI5.440e-26391.38Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE7.010e-10098.85Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZF46_9STRA4.470e-3537.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G7K6S4_MEDTR4.530e-1440.20Transcription initiation factor TFIID protein, put... [more]
A0A2K1JX46_PHYPA6.090e-1445.19Bromo domain-containing protein n=10 Tax=Physcomit... [more]
A0A7I4APP2_PHYPA7.530e-1444.66Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A2K1JG16_PHYPA8.060e-1444.66Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A6I9TST8_SESIN5.640e-1340.38transcription initiation factor TFIID subunit 1 is... [more]
A0A392P3L6_9FABA6.650e-1339.60Transcription initiation factor TFIID subunit 1-li... [more]
A0A4D8YNZ6_SALSN9.850e-1339.42Transcription initiation factor TFIID subunit 1 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 66..257
e-value: 2.1E-30
score: 105.8
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 314..477
e-value: 1.2E-10
score: 40.6
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 315..473
coord: 142..256
NoneNo IPR availablePANTHERPTHR13900:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1coord: 315..473
coord: 142..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6871contigEcto-sp13_S_contig6871:200..7797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6871.17836.1mRNA_Ecto-sp13_S_contig6871.17836.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6871 200..7797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6871.17836.1 ID=prot_Ecto-sp13_S_contig6871.17836.1|Name=mRNA_Ecto-sp13_S_contig6871.17836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=504bp
SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVI
IRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPR
KPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESH
STFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAG
FGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLI
REPMTKKEKERSSQKQKSKKEKSGKFFFSGDKGGGGSGGGGGGKNAPGGG
AAGSSSSSSSKATFRHDQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKA
THLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKA
RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRP
EDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQVSC
SWC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591
IPR040240TAF1