mRNA_Ecto-sp13_S_contig6871.17836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6871.17836.1
Unique NamemRNA_Ecto-sp13_S_contig6871.17836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 775 bits (2000), Expect = 5.440e-263
Identity = 456/499 (91.38%), Postives = 462/499 (92.59%), Query Frame = 1 
Query:    1 SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTKKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KATFRHDQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKARLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 1494
            SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDK+LIAAPKSW+DIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMH+EK           DLLP+ESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIE             RELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK EK     XXXXXXXXX    X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KATFRH+QFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAK RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWA+LSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV
Sbjct:  485 SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKVLIAAPKSWEDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHREK-----------DLLPLESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIER------------RELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTKSEKERSSQXXXXXXXXXGKFFXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATFRHNQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKGRLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWAHLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 960
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 7.010e-100
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 1 
Query:  973 MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKARLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 1494
            MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAK RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWA+LSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV
Sbjct:    1 MPVVFLVGQTEPQMEALEPTKATSKATHLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKGRLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRPEDFCALESMVSAWAHLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQV 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.470e-35
Identity = 100/270 (37.04%), Postives = 143/270 (52.96%), Query Frame = 1 
Query:    7 ILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVIIRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPRKPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESHSTFVVVEYVEERPPLLGSTGMASTIITFVRSS-------------------SRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREP 759
            + +R N+ +MA +K +RL SAA  TG+  +     K    +  +R V + PP HA PA +K+L+  P+  +++R   RPR  +  LL +   ++      KA   GGQ          E+V++       RT        DL+P E  + F++VEYVEERPPLL +TGMAS +I + RS+                   +R+   G E          G+ + L PQE+SPF+GEIR G  Q SICN L+RAP+F+H A D+DFLLIREP
Sbjct:  123 LTDRENKLRMAEDKAQRLASAARATGFNYSADTTVKGISTDRTMRPVEVAPPVHAPPAAEKMLLRVPRP-EEVRAFRRPR--VARLLSSGQRLLLKSLGAKAA--GGQM---------EMVTL----RGGRTMSTMRRERDLIPFEPSARFILVEYVEERPPLLCATGMASRVINWWRSTXXXXXXXXXXXXXXXXXRIARQASFGAEGDEKPPERPDGQPQRLEPQEESPFMGEIRAGVVQPSICNELYRAPLFEHSARDTDFLLIREP 374
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: G7K6S4_MEDTR (Transcription initiation factor TFIID protein, putative n=3 Tax=Medicago truncatula TaxID=3880 RepID=G7K6S4_MEDTR)

HSP 1 Score: 86.7 bits (213), Expect = 4.530e-14
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP LL + GM + + T+ + SS     G    RN+ ++  G    L P + SPFLG+++PGS Q+S+   ++RAP+F H  P +D+LL+R P  K
Sbjct:  775 LMEYCEERPLLLSNVGMGARLCTYYQKSSPDDHSGAALLRNTDSS-LGHIISLDPADKSPFLGDLKPGSSQSSLETNMYRAPVFAHKVPPTDYLLVRSPKGK 875
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A2K1JX46_PHYPA (Bromo domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX46_PHYPA)

HSP 1 Score: 86.3 bits (212), Expect = 6.090e-14
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVR--SSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP LLG+ GM   + T+ R  SS+      + A R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAPIF H    +DFLL+R P  K
Sbjct:  813 LMEYCEERPLLLGNVGMGGRLFTYYRKRSSTDATAATLRAERGPWV---GITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPIFPHKVATTDFLLVRSPKGK 913
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A7I4APP2_PHYPA (Ubiquitin-like domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4APP2_PHYPA)

HSP 1 Score: 85.9 bits (211), Expect = 7.530e-14
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAG-RNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP +LG+ GM S + T+ R   R P     A  R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAP+F H    +DFLL+R P  K
Sbjct:  809 LMEYCEERPLVLGNVGMGSRLYTYYRK--RTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVATTDFLLVRSPKGK 909
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A2K1JG16_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG16_PHYPA)

HSP 1 Score: 85.9 bits (211), Expect = 8.060e-14
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAG-RNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP +LG+ GM S + T+ R   R P     A  R       G T  L P EDSPFLG+IRPG  Q+S+   ++RAP+F H    +DFLL+R P  K
Sbjct:  809 LMEYCEERPLVLGNVGMGSRLYTYYRK--RTPTDATAATLRAERGPWVGITLPLEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVATTDFLLVRSPKGK 909
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A6I9TST8_SESIN (transcription initiation factor TFIID subunit 1 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TST8_SESIN)

HSP 1 Score: 83.2 bits (204), Expect = 5.640e-13
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGR--NSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP LLG+ GM + + T+ + S+     G + G    +G  G G    L P + SPFLG+I+PGS Q+ +   ++RAPIF+H  P +D+LL+R    K
Sbjct:  790 LMEYCEERPLLLGNAGMGARLCTYYQKSAP----GDQTGNLLRNGNNGLGSVIILDPADKSPFLGDIKPGSSQSCLETNMYRAPIFQHKVPSTDYLLVRSSKGK 889
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A392P3L6_9FABA (Transcription initiation factor TFIID subunit 1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P3L6_9FABA)

HSP 1 Score: 77.8 bits (190), Expect = 6.650e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:  466 VEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            + Y EERP LL + GM + + T+ + SS     G    RN+ ++  G    L P + SPFLG+++PGS Q+S+   ++RAPIF H  P +D+LL+R    K
Sbjct:    1 LRYCEERPLLLSNVGMGARLCTYYQKSSPDDQSGSLL-RNTDSS-LGHIISLDPADKSPFLGDLKPGSSQSSLETNMYRAPIFTHKVPPTDYLLVRSSKGK 99
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Match: A0A4D8YNZ6_SALSN (Transcription initiation factor TFIID subunit 1 n=5 Tax=Salvia TaxID=21880 RepID=A0A4D8YNZ6_SALSN)

HSP 1 Score: 82.4 bits (202), Expect = 9.850e-13
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:  463 VVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGR--NSGAAGFGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLIREPMTK 768
            ++EY EERP LLG+ GM + + T+ +  +     G + G    +G  G G    L P + SPFLG+I+PG+ Q+ + + ++RAPIF+H  P +D+LL+R P  K
Sbjct:  785 IMEYCEERPLLLGNPGMGARLCTYYQKLAP----GDQMGNLMRNGDNGLGSVVTLDPADKSPFLGDIKPGASQSCLESNMYRAPIFQHKVPLTDYLLVRSPKGK 884
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6871.17836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW7_ECTSI5.440e-26391.38Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE7.010e-10098.85Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZF46_9STRA4.470e-3537.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G7K6S4_MEDTR4.530e-1440.20Transcription initiation factor TFIID protein, put... [more]
A0A2K1JX46_PHYPA6.090e-1445.19Bromo domain-containing protein n=10 Tax=Physcomit... [more]
A0A7I4APP2_PHYPA7.530e-1444.66Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A2K1JG16_PHYPA8.060e-1444.66Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A6I9TST8_SESIN5.640e-1340.38transcription initiation factor TFIID subunit 1 is... [more]
A0A392P3L6_9FABA6.650e-1339.60Transcription initiation factor TFIID subunit 1-li... [more]
A0A4D8YNZ6_SALSN9.850e-1339.42Transcription initiation factor TFIID subunit 1 n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6871contigEcto-sp13_S_contig6871:200..7797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score781.6
Seed ortholog evalue2.3e-223
Seed eggNOG ortholog2880.D7FIW7
Model size1512
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons13
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
Cds size1512
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6871.17836.1prot_Ecto-sp13_S_contig6871.17836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6871 200..7797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.5540452-CDS-Ecto-sp13_S_contig6871:199..3821681463943.5540452-CDS-Ecto-sp13_S_contig6871:199..382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 200..382 -
1681463943.5675032-CDS-Ecto-sp13_S_contig6871:714..8581681463943.5675032-CDS-Ecto-sp13_S_contig6871:714..858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 715..858 -
1681463943.5786777-CDS-Ecto-sp13_S_contig6871:1246..13751681463943.5786777-CDS-Ecto-sp13_S_contig6871:1246..1375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 1247..1375 -
1681463943.589429-CDS-Ecto-sp13_S_contig6871:1604..16801681463943.589429-CDS-Ecto-sp13_S_contig6871:1604..1680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 1605..1680 -
1681463943.599789-CDS-Ecto-sp13_S_contig6871:2045..22001681463943.599789-CDS-Ecto-sp13_S_contig6871:2045..2200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 2046..2200 -
1681463943.6115983-CDS-Ecto-sp13_S_contig6871:3142..32441681463943.6115983-CDS-Ecto-sp13_S_contig6871:3142..3244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 3143..3244 -
1681463943.6341386-CDS-Ecto-sp13_S_contig6871:3746..38551681463943.6341386-CDS-Ecto-sp13_S_contig6871:3746..3855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 3747..3855 -
1681463943.6464343-CDS-Ecto-sp13_S_contig6871:4363..44041681463943.6464343-CDS-Ecto-sp13_S_contig6871:4363..4404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 4364..4404 -
1681463943.6579263-CDS-Ecto-sp13_S_contig6871:5137..52841681463943.6579263-CDS-Ecto-sp13_S_contig6871:5137..5284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 5138..5284 -
1681463943.6681745-CDS-Ecto-sp13_S_contig6871:5605..57531681463943.6681745-CDS-Ecto-sp13_S_contig6871:5605..5753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 5606..5753 -
1681463943.6792016-CDS-Ecto-sp13_S_contig6871:6032..61211681463943.6792016-CDS-Ecto-sp13_S_contig6871:6032..6121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 6033..6121 -
1681463943.697219-CDS-Ecto-sp13_S_contig6871:6764..68131681463943.697219-CDS-Ecto-sp13_S_contig6871:6764..6813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 6765..6813 -
1681463943.7100031-CDS-Ecto-sp13_S_contig6871:7657..77971681463943.7100031-CDS-Ecto-sp13_S_contig6871:7657..7797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6871 7658..7797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6871.17836.1

>prot_Ecto-sp13_S_contig6871.17836.1 ID=prot_Ecto-sp13_S_contig6871.17836.1|Name=mRNA_Ecto-sp13_S_contig6871.17836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=504bp
SHILERTNRRQMATEKQKRLQSAAMKTGYTINTVGDGKASRAESNIRAVI
IRPPHHASPAEDKILIAAPKSWDDIRNLHRPRMQIHTLLPNQMSIVRLPR
KPKALQGGGQGGGGFGARIGEVVSMPMHKEKARTELLQHWHIDLLPIESH
STFVVVEYVEERPPLLGSTGMASTIITFVRSSSRRPIGGIEAGRNSGAAG
FGETRELSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKHHAPDSDFLLI
REPMTKKEKERSSQKQKSKKEKSGKFFFSGDKGGGGSGGGGGGKNAPGGG
AAGSSSSSSSKATFRHDQFYVIRPMPVVFLVGQTEPQMEALEPTKATSKA
THLNIVTFLAKRLFDTTKAAQAGNAGIPFKKVLEEARFLSLPRAKDSAKA
RLKEMVREIGERRDARDDGDGPVSTESLWAAKPDLNMQQVTAQAAKLFRP
EDFCALESMVSAWANLSDVGLDTLTSHDAVAKFLLKIKKRHDCLLAQVSC
SWC*
back to top

mRNA from alignment at Ecto-sp13_S_contig6871:200..7797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6871.17836.1 ID=mRNA_Ecto-sp13_S_contig6871.17836.1|Name=mRNA_Ecto-sp13_S_contig6871.17836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6871:200..7797- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCACATCTTGGAGAGAACGAACAGGCGGCAGATGGCCACGGAGAAGCA
GAAGCGGCTACAGTCGGCGGCGATGAAGACCGGGTACACGATCAACACGG
TGGGGGACGGGAAGGCCAGCCGCGCCGAGAGCAACATCAGGTATGTACGT
GCTAATAGTGGTTCCGCCCCTACCCTGCAGAAGCTGTACTAGTTCGCGAA
CGCCGACGGCGTTGCGGAGAACATGGTGTTGTCACATCACGGGAGCTGTA
GACTACTCAGGGTATTGTACTCGCGCTTCGTTTGCCTTTTGCCTGCTGAG
TGGATATTTATCTCTTGTTTTCCGTGTACGTAAGCATCCCTCCCTTTCAA
TTGTTGTTGTTGGCCTGCGTACACGGAAGGCATGCGCGTTAATTCGACCA
GTGTTTGACGGATGCAGGCGGTGATACACGACCTGGCTCTACGCCTGTTT
CCACCGGTAACAGGAACGATTGTCTGACCATGCATGCATGCACGGCCCAT
GGCCAGACGACAAAGTCAAGAACTATGTGGATCCTCCCCCTCTTTCTCTT
GCGGCTGCTGATGTTTAAGCCTTGGTCAGTCGGCACCCGCTCTGCTGGTC
GCAAGTAGTTGCGCCGCGCTCTCCGTGCGTTCCAAACCGTGTCGGCGTGC
CGGCCGTGTCGCCGCTCAAAGCCGAAAGAAACGAATAATAATATCAAGAG
TATGAGGTGCAGAGGTTGCATGGAAATGCTGTAGCTCACGTTTACCGCGA
ACAAATACGTCGTACCAACTCTTTGAGTGAATTCTATTCCATCCTCGTGA
TTCAACACACGCTCTTCGCTTCACCCGCCCGCTAACCCATCTCGCCCTGT
CTCACCCCCCTCACTTTTCCTTGCCCTCGTTCGCTGCACCCCCTCTCTGC
TTGTTTGCCTCCGCGACGTTTGCGACTGGGTTGGCGTTTGCCGCTGTTTT
TGTCTCTGGGGGCGTTTTTTTACGTTATTTTAAGGGCTGTCATCATTCGG
CCCCCACACCATGCCTCTCCGGCGGAAGACAAGGTGAGTGCTGTAACCCA
AAAACTACTGCTGTTTGGTGCTGCGGTAAGGCCTAGGGGTCATTCTTGCA
CGTCGTTGTTTAAGTCTCGGTCATGTCTTTGTTGCACGTGAGGCCGCGTG
CTGCGAGTGTCTGCGTGTGTGTTGGGTGCCGTTGGCTGCTGTTTAGTGTA
GAGTATGTCGTCTAGTCTACTTTTGCAGGCGTGAGTCGCCACCGACGGGT
TTCTCATGCCGCTCGATCGATATCTCGCTCCTAGGACTAGAATANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTT
CTCTCTTTTTCTCTCTTTCTCTCTCTGTCTCTTTCTCTCTGTCTCTTTCT
CCGTCTATCTGTCTGTCTGTGCATCTTGTTCAATGTCTCTCTCTCCCCTC
CCATATTTGTGGTGTCGTACACAAAGATTTTGATCGCTGCCCCCAAGAGC
TGGGATGACATCCGCAACCTTCACAGACCGAGGATGCAGATCCACACGCT
CCTGCCCAATCAGATGTGAGTTTAAACTTTGAAGTCACATGGAGGACGTG
TTTGCAGTGTTTGTTTTGCCGCCATCAATTGACTCTGTGCTGTTGTTGCG
GCTGCTGTTGTTGCTTCTGCTGTCGCTGCTGTGCTGTTTTTCCTGCTAAA
GCCCTGTATCGTGGCTTGAATGAACCTTCTCAGGCCGACACCGGCACACT
GTAACCTGTGAGGAAAGGACACGCACCTCAAGTACTCGTTGAAAGCTTGC
GAAATATCTATGCACATGCGACATCAAACCTCAACCTCGAACAGGTCGAT
CGTTCGTCTTCCGAGAAAGCCCAAGGCATTGCAGGGGGGAGGGCAGGGCG
GCGGTGGTTTCGGTGCCCGTATCGGAGAGGTGGTTTCGATGCCCATGCAC
AAAGAGAAGGCAAGAACTGAATTGCTTCAGCATTGGCACATCGTTACTGG
TTCCCTTTTTGATGCCCTTTGGCACCCGCTGTTGTTGTATTATGACAAAT
ATGCATGACGATCACCGAAACACTACCCTTTCGATGGAATAACGTAATTC
GTCGAAGGGCATGTGTTGAAGACCCTGCTATGAGTGGGGGCGAACACATG
CTGTTGTTGTTGTTGTTGGCCGCCCATCGTACCCCTGCTTGCTTTCGCTG
CGATGTTCTCAATTGGTAGGACCGTTTTGTGCCGAGCTTTTGACGTGCTG
TGATTGTGGGCGTCTTGACATCCGTCGACCCCCTCACTTTTGTTTTGCCG
CGTTTCCTCACAGGACCTGCTTCCCATAGAGTCCCACTCCACCTTCGTGG
TTGTCGAGTACGTTGAGGAGAGACCTCCCCTCTTAGGGTCCACCGGCATG
GCTTCGACCATCATAACCTTTGTGCGGAGCAGCAGCCGCCGGCCAATCGG
GGGCATCGAGGTATGTCAATTTAGCATTTTTATGTTCTGACCAAGATTTT
ATGTCTTATCTACTTCGATTCCAAGGATCGGTCTTTTTCACTTTCATTGT
TCGACCACTTCTGTGTCCTCGTGTCCCATTTGACAACAGCTAGCTGTATT
TTTTCGGGTTGTGTCGCCGAAGGTAGATGTAATGGATAACTGGTCCATGT
TTTTTTAGTGGACTCCTACCATGTTCGGAGCCTCTACTTGGACATGGGCG
TGTGGACATTTAGGGAGACGAAACGTAAGGACGTTCTTTTGAAGAGGGAC
TCCGTGAGAAACTTGAATCACCTCACTGAGAGCGTGCTCAAGAATGTTCT
CAAGAATGTCATCAAGAATGTTCTCAAGGGGAACTCCTACTTTTCCTTCC
CTACTCTGCAACAGCAATACAGATCGTCGACAAACTTGTAATAGGAGGCT
CGATTTCGAACCCGCTCTTGTTTTCGCAAAATATTAACGGACAACCAAGC
GATTTCACGTTGGTAAGGTAAAATCTGTTCTAGCGTGGAATTTTTTTTTC
TATTCTCCGCTCTACCTGTCTGTCTGTCTCTCTCTTGCGCTCTCTCTCGA
GATTTTGGGCGTGCTTTATTTGCCTGACGGGCGCAGCAGTAACTCTCCCT
CTCGCCTGGCGTGTCCATTGTGCAAAACCGTGACCTACCTCACCCCTTGC
GGTGTGATTGTTTATATTGTTTGTATTGTTTATGTCGTGGCAGGCGGGAC
GAAACTCGGGGGCGGCGGGATTCGGCGAGACGAGGTACGTACATTGAACC
GTATATCACACAAGATAACACCCCCTCTGCTCACAACACCACTCCCGGCG
TTTTTTTTGTTCAGGTGTTCAAAACGTGAACATTTTTGTCTCAGATAACG
ATTTTTTGCGACGTAAGAAAACATCCCTCCAAGCAATATCACACCGGGTG
TAGTTCGTTTTAGAGGTCAAAATATTCCAGCAGCAGGGGTTGTTTTCCGG
TGTGTGTCGTATTCGGCATGCCATCAGTAGACACACATCGCTCGCAGAGC
CAACAACAAGTGCCGTCTATTCTTGATATTCTGACGTTTAACGTCAACGT
GCCCTCATGGTAATTTGGGCGACATGGAGCAGGAACACCAACCGGCCTCG
CTATGAACAGACAACAACGATCTCACCACTGCTTCGTGCGGCAGGGCGCA
TTCATGAGATGTAGCCCCCCGCCCGTCTCGTGCTGTGGTCCGAATATACC
ATTCCTGTGCCGCAACCGTTCACGTTGACGCGGCGAGCGCAGAGAGCTTA
GTCCGCAGGAAGACTCACCGTTTCTGGGAGAGATAAGACCCGGGTCTGAG
CAGGCATCCATCTGCAACGGCCTCTTCCGCGCCCCGATCTTCAAGCACCA
CGTGAGAATACATTAGTAGAGCACTACTATGTGAGAGATGCAGTACAGCA
CTACGTGAGAGGCGAGAGCGCCAGCATGAGGGAGGACGTGCCACACACGT
AGAATTCGATGATCGTGAGGATAAACCGTACTGGCATTGGTTGCGAACCG
TGATCTCGATTAGATTAGATAAGATTAGAGTAGATCGCGGACCGACATTC
TGAAATGTAGATACATTTGCTCCCTACATTTGAGCGGGTGCTACTGTCGT
GGGTTGGAGTGGTGTTTCGCCTGGCAATAAAGCTTTTTGGCCGCTATGCG
TTTTTTTATCCGCCCACACTTCCATCTGTTATAACTTCTTATTTGCTTGG
CGGACACTGCTTCGCGTATTAGCCGATCGGTCGCCATTCAGGCGCGTGAA
TGTGTGGGTAGATGGCACGAGGAGTTAGGTCAGACGTGGCCTCTGTTTTT
TCAACGATGCAGTGGTACTGCGGCCCCTTCTTGCGCGATTCTTCGAACAC
CAGGCGCCTGATTCTGATTTCTTGCTCATCCGAGAGCCAATGACGAAGAA
AGAGAAAGAGCGCAGCTCCCAGAAGCAGAAGAGCAAGAAGGAGAAGTCCG
GAAAGGTATGGGTATGTTATGGTTTGGTACGGTACGGTATGACATGGTAT
GGTATGCCGTGTTGGTGGGTGTTCAATAGTCAGTGCCGCTAGCGAGTGTT
GTGTCGTAGGCTGGGTTAGGTACTGCCACACCTCCGGCGACGAGTTCGGA
AGCTCGATTGTATGGACGGCGCCGAGAGTGAAGCCGTTGAAACCGTCGCA
TTGAGAGTTTCCGAAAACGTACCTTTGAATCCAGCGTGCTCTTCGATCTC
GAGTACAACAGTAGAGGCTTGATATTCGGTCCTGGGGGGGTGCTATCGGT
GTGGCCACTTGGGGGGGGGGGTGATACACAAAGATTGCGGCAAAAAACGC
AGGTTGGTATGAAAACGTGCCTCCCCTGGAAGCAATAGGTCGGCCCTTGC
TGTTTCAGATGTTCGCGGGCTTGCACAACGTGGGCTTTTATTGTTCACCA
CGTACCGAAAGTGGCACGAGATACCACACCCGCCGGATATATATCGAGGC
TCGATTACTCCGCGACGAAGAAGACACATAAAATAGAACTGTACGTTTTC
GGGGACATCTCAACAAGAAGCTTCAACGCCGCCCTTTTCGGTGCTGCCAC
TCTCTTTACTGCTGTGGAGAAATCGAGCTTTGAATTTCTGTCCGGGGGGT
GTGGCATCTTGTGACACCTGCAGTAAACGGCGTACGCCATCCCCAAACGA
AGCCGTTGTGTTTGGCAGCAATCGCCCTTCGATCATTGAATGGACGAGAT
TTTTTACCTGATTGTTGACGGGTGATTTAGCAAGGCTCGCGCTCCCCGAA
TGAGGACACCAACTCTCGAATCGAACGACCTGCCGAAACACCTCGAAATC
CAGCACCCTGGTTTTGGGCTGGGGTTAGGGTTTGGACTGGACACCGTGCG
ATTCCACGGTTGTATTTCGGTAATCGAAGTCCCCTCGATGCCCGCAGTTT
TTCTTCAGTGGCGACAAAGGGGGCGGCGGTAGCGGCGGCGGCGGCGGCGG
GAAAAATGCCCCCGGAGGGGGTGCCGCAGGGTCATCGTCGTCCTCTTCCT
CCAAGGCCACCTTCAGACACGACCAGTTCTACGTTATCCGCCCAATGCCA
GTGTGAGTGTTGGGGCTCTCGCCTTTGTTGTTTGTTCCGAACTCGAGTTT
TGTCAGTAAGTTCAGCAGCATTGTGGGTAGGTATGTCCCTTATACTCGGA
GTAGAGAACACAGAAAGTCCCATAGGTGTTCGACGTGAGTGTTTTCAATG
CAGGTACACTGGACACATGTATATCATGTCTGATGGGGGTAGATTTCCCC
CTCCCAGCCGTTGTGTCAGATGTCGGTCATGAAGCTTCGAATCGTTTCCC
TTTCGCACCCCCATCCTCTACGCCATCCGCACGCTGGCAATCTACCCCTT
TGCCAAGTGCCTGACGCCGTCCGCCCATGCACTCTTTGTGGCACTGCTCC
GACGCTCGTGCTAAAAGCGTGTTTTTGGTGGGTCAGACTGAGCCACAGAT
GGAAGCCCTCGAGCCCACGAAGGCCACGTCAAAAGCCACGCATGTGAGTA
AAGCGTTTCTCGTCTGTGCTGTCTGTTTGTCTGTCCTTCTTTCCCTTTTG
ACACCTGCATCTCTTCCTCCATGTCGCATCGGATGTCTCTCGTTCTATTC
GTAGCTATCTCTCACCCGCCCGCTTCCTCTCGAAGACGCGTGGCAAGGGT
CCAACCGCTTGAAACGCATGCAAAACATGAGTATGCCTCTCCCTCTACTG
CGCGTACACTTGTTTTTGTCAGCTGAACATCGTTACTTTTTTGGCGAAGC
GGTTGTTCGACACGACCAAGGCGGCACAGGCAGGCAACGCCGGGATTCCC
TTCAAGAAAGTGCTCGAGGAGGCCAGGTTCCTCTCGCTTCCTAGGGCCAA
GGTATGTACAGCTGCATGTTTAGCACGACGCCGTAGTTGTGCATTGAAAA
TTGGCTACACATGAGGAGACAGAGAGGCTATCTACCCGTTGGAGATATAC
CCACAGTCGAAAGGGATGTGTTGTAGTCTTTCAGTCAACGGAGGTTAACC
GGCTGGAAACTGGGAATATGTTGGGTCTGTTCAAGCCTACGTTGTTGTTC
ATGATACATATTATTGTCTTCGTGGTCGTTTGTTGCTGTCGACGTTTGGA
TTGAAAGCGCAACCAACAGTCTGTACTTTCCGTCAATCACGTCCCTGCTC
AGCTCTCATCTCCCGCCGCACCCTCTGTCTGTCGTCTGTCTGTCTCTCTC
TCTCTGTCTCTCCACCACTGTTGCTGGTGGTGCTGTCAGGACTCAGCCAA
GGCGCGTTTGAAGGAGATGGTCCGAGAGATCGGCGAGAGGCGAGACGCGA
GGGACGATGGCGACGGCCCAGTATCGACGGAGAGCCTGTGGGCCGCCAAG
CCTGACCTCAACATGCAGCAGGTCACCGCGCAGGTGTGGTTGCCTACCCT
GACGCATCTTGTTTTTCATGTTCGATTTGACCTGATGGTGGTTTCTCTGC
CGCGTTGGTGTCCAGATTGTGTGCTGTTCCTGCCTTGAGTGCATGGCCTA
CGTCGAACATTCACGAGTAAAAAGAACACACGCAGCACGCACACTCAATA
CACGCGGCGCAGACTTAGGAGATTGTTTGTTTCGGCCTGTTGATGCTGCC
GAGGTTTGATCGCGGTCTTTGCTGATTAGGCATCTAACGTGAACAATGGA
CAAACACTCATGCACCCGATCACATGTGTAGAAACGCAAGTCTCCCTTGT
CCTCCGCTCCGACAGGCGGCAAAGCTCTTCCGTCCTGAGGACTTCTGCGC
TCTCGAGAGCATGGTGTCCGCGTGGGCCAACCTCTCTGACGTTGGGCTGG
ACACCTTGACATCCCACGATGCCGTCGCGAAGTTCCTCCTTAAGATCAAG
AAGCGCCACGACTGTTTACTGGCCCAGGTGAGTTGTTCCTGGTGTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6871:200..7797-

>mRNA_Ecto-sp13_S_contig6871.17836.1 ID=mRNA_Ecto-sp13_S_contig6871.17836.1|Name=mRNA_Ecto-sp13_S_contig6871.17836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6871:200..7797- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCACATCTTGGAGAGAACGAACAGGCGGCAGATGGCCACGGAGAAGCA
GAAGCGGCTACAGTCGGCGGCGATGAAGACCGGGTACACGATCAACACGG
TGGGGGACGGGAAGGCCAGCCGCGCCGAGAGCAACATCAGGGCTGTCATC
ATTCGGCCCCCACACCATGCCTCTCCGGCGGAAGACAAGATTTTGATCGC
TGCCCCCAAGAGCTGGGATGACATCCGCAACCTTCACAGACCGAGGATGC
AGATCCACACGCTCCTGCCCAATCAGATGTCGATCGTTCGTCTTCCGAGA
AAGCCCAAGGCATTGCAGGGGGGAGGGCAGGGCGGCGGTGGTTTCGGTGC
CCGTATCGGAGAGGTGGTTTCGATGCCCATGCACAAAGAGAAGGCAAGAA
CTGAATTGCTTCAGCATTGGCACATCGACCTGCTTCCCATAGAGTCCCAC
TCCACCTTCGTGGTTGTCGAGTACGTTGAGGAGAGACCTCCCCTCTTAGG
GTCCACCGGCATGGCTTCGACCATCATAACCTTTGTGCGGAGCAGCAGCC
GCCGGCCAATCGGGGGCATCGAGGCGGGACGAAACTCGGGGGCGGCGGGA
TTCGGCGAGACGAGAGAGCTTAGTCCGCAGGAAGACTCACCGTTTCTGGG
AGAGATAAGACCCGGGTCTGAGCAGGCATCCATCTGCAACGGCCTCTTCC
GCGCCCCGATCTTCAAGCACCACGCGCCTGATTCTGATTTCTTGCTCATC
CGAGAGCCAATGACGAAGAAAGAGAAAGAGCGCAGCTCCCAGAAGCAGAA
GAGCAAGAAGGAGAAGTCCGGAAAGTTTTTCTTCAGTGGCGACAAAGGGG
GCGGCGGTAGCGGCGGCGGCGGCGGCGGGAAAAATGCCCCCGGAGGGGGT
GCCGCAGGGTCATCGTCGTCCTCTTCCTCCAAGGCCACCTTCAGACACGA
CCAGTTCTACGTTATCCGCCCAATGCCAGTCGTGTTTTTGGTGGGTCAGA
CTGAGCCACAGATGGAAGCCCTCGAGCCCACGAAGGCCACGTCAAAAGCC
ACGCATCTGAACATCGTTACTTTTTTGGCGAAGCGGTTGTTCGACACGAC
CAAGGCGGCACAGGCAGGCAACGCCGGGATTCCCTTCAAGAAAGTGCTCG
AGGAGGCCAGGTTCCTCTCGCTTCCTAGGGCCAAGGACTCAGCCAAGGCG
CGTTTGAAGGAGATGGTCCGAGAGATCGGCGAGAGGCGAGACGCGAGGGA
CGATGGCGACGGCCCAGTATCGACGGAGAGCCTGTGGGCCGCCAAGCCTG
ACCTCAACATGCAGCAGGTCACCGCGCAGGCGGCAAAGCTCTTCCGTCCT
GAGGACTTCTGCGCTCTCGAGAGCATGGTGTCCGCGTGGGCCAACCTCTC
TGACGTTGGGCTGGACACCTTGACATCCCACGATGCCGTCGCGAAGTTCC
TCCTTAAGATCAAGAAGCGCCACGACTGTTTACTGGCCCAGGTGAGTTGT
TCCTGGTGTTAG
back to top