mRNA_Ecto-sp13_S_contig6869.17834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6869.17834.1
Unique NamemRNA_Ecto-sp13_S_contig6869.17834.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6869.17834.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.390e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:  205 VVPGAGLLPGFSSMKDGGVNIDPAPPCAASLPISFAGGGGA 327
            VVPGAGLLPGFSSMKDG V+I PAPPCAASLPISFAGGGGA
Sbjct: 1281 VVPGAGLLPGFSSMKDGSVHIAPAPPCAASLPISFAGGGGA 1321
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6869.17834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFS7_9PHAE6.390e-1492.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6869contigEcto-sp13_S_contig6869:1262..1639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.2487063-CDS-Ecto-sp13_S_contig6869:1263..14281681463943.2487063-CDS-Ecto-sp13_S_contig6869:1263..1428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 1264..1428 -
1681463943.2654421-CDS-Ecto-sp13_S_contig6869:1456..16391681463943.2654421-CDS-Ecto-sp13_S_contig6869:1456..1639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 1457..1639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6869.17834.1prot_Ecto-sp13_S_contig6869.17834.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6869 1264..1639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6869.17834.1

>prot_Ecto-sp13_S_contig6869.17834.1 ID=prot_Ecto-sp13_S_contig6869.17834.1|Name=mRNA_Ecto-sp13_S_contig6869.17834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AAAGFEAERQHERWWPAVTEQRYRCRSCCRSRYGRCRCQRRPRCRHRQRV
AATAAAAAAAALRNGAGVVVPGAGLLPGFSSMKDGGVNIDPAPPCAASLP
ISFAGGGGADNGVAAA
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mRNA from alignment at Ecto-sp13_S_contig6869:1262..1639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6869.17834.1 ID=mRNA_Ecto-sp13_S_contig6869.17834.1|Name=mRNA_Ecto-sp13_S_contig6869.17834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6869:1262..1639- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAGCCGGGTTTGAAGCCGAACGGCAGCACGAACGATGGTGGCCCGC
CGTCACCGAGCAACGCTACCGCTGCCGCAGCTGCTGCCGCAGCCGCTACG
GCCGGTGCCGCTGTCAGCGGCGCCCCCGGTGCCGCCACCGCCAACGTGTC
GCCGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGTTGCGGAACGGTGCCGGGGTGGTGGTGCCGGGGGCCGGG
TTGCTGCCCGGGTTTTCGTCCATGAAGGACGGCGGCGTCAATATCGATCC
GGCTCCGCCGTGCGCTGCCTCGCTCCCAATCTCATTTGCCGGCGGCGGCG
GAGCTGACAACGGGGTGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6869:1262..1639-

>mRNA_Ecto-sp13_S_contig6869.17834.1 ID=mRNA_Ecto-sp13_S_contig6869.17834.1|Name=mRNA_Ecto-sp13_S_contig6869.17834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6869:1262..1639- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAGCCGGGTTTGAAGCCGAACGGCAGCACGAACGATGGTGGCCCGC
CGTCACCGAGCAACGCTACCGCTGCCGCAGCTGCTGCCGCAGCCGCTACG
GCCGGTGCCGCTGTCAGCGGCGCCCCCGGTGCCGCCACCGCCAACGTGTC
GCCGCCACAGCAGCAGCAGCAGCAGCAGCAGCATTGCGGAACGGTGCCGG
GGTGGTGGTGCCGGGGGCCGGGTTGCTGCCCGGGTTTTCGTCCATGAAGG
ACGGCGGCGTCAATATCGATCCGGCTCCGCCGTGCGCTGCCTCGCTCCCA
ATCTCATTTGCCGGCGGCGGCGGAGCTGACAACGGGGTGGCGGCGGCG
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