mRNA_Ecto-sp13_S_contig6869.17833.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6869.17833.1
Unique NamemRNA_Ecto-sp13_S_contig6869.17833.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6869.17833.1 vs. uniprot
Match: D8LIU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 8.240e-42
Identity = 288/432 (66.67%), Postives = 290/432 (67.13%), Query Frame = 1 
Query:    1 YHQGEGHGASSAGVAAASTQATXXGXXXXXXVSPAVSPALSNGNNATAXXXXXXWLAKXXXXXXXXXXXXXGVGGAGSAVPSVNIAXXXXXXXXXXXXXXXXXXXXXXXXXGAAALAVPPTPSAPSPPLPLSSSLTSTTPVSSSSDGALRQAVGETLPPPSGAAGVVRPGPTXXXXXXXXXXXXXKLVSAPGTVSTATSSPXXAPVAPPPTPIKGNHFAQPPILWPVLAGMPPAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAPSVLPXXXXXXVAGPSYLQAQPCAGATXXXXAPHGTSSHHGHPSQVRRADTAAVLTTGWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGKTGRSEEVS-HSVEALLALKEVFFAQGPGVDVPR 1293
            Y QGEGHGA             XX XXXXXXVSPAVSPALSN NNATA      WLAK             GVGG GSAVPSVNIAXXXXXXXXXXXXXXXXXXXXXXXXX AAALAVPPTPSAPSPPLPLSS LTSTTPVSS SDG LRQAVGET  P             XXXXXXXXXXXXX                XX        PIKGNHFAQPPILWPV                    XXXXXXXXXXXXXXXXXXXXXXXX  AAP VLP      VAGPSYLQAQP AGA XXXX    T SHHGHPSQ  R     +L   W+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G            HSVEALLALKEVFFAQ PGVDVPR
Sbjct:   10 YPQGEGHGAXXXXXXXXXXXXXXXXXXXXXXVSPAVSPALSNVNNATAMAAASAWLAKQQQAATVAATAAGGVGGVGSAVPSVNIAXXXXXXXXXXXXXXXXXXXXXXXXXXAAALAVPPTPSAPSPPLPLSSPLTSTTPVSSPSDGTLRQAVGET--PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIKGNHFAQPPILWPVXXXX----------------XXXXXXXXXXXXXXXXXXXXXXXXXXAAPGVLPAGAGGGVAGPSYLQAQPYAGAXXXXXXXXXTPSHHGHPSQ--RGAGGEMLR--WQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGXXXXXXXXXXXXHSVEALLALKEVFFAQRPGVDVPR 419
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BLAST of mRNA_Ecto-sp13_S_contig6869.17833.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.880e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query: 1186 GKGKTGRSEEVSHSVEALLALKEVFFAQGPGVDVPR 1293
            GKGKTGRSEEVSHSVEALLALKEVFFAQGPGVDVPR
Sbjct: 1419 GKGKTGRSEEVSHSVEALLALKEVFFAQGPGVDVPR 1454
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6869.17833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIU4_ECTSI8.240e-4266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFS7_9PHAE2.880e-11100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6869contigEcto-sp13_S_contig6869:444..4877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1296
Hectar predicted targeting categoryother localisation
Exons6
Cds size1296
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6869.17833.1prot_Ecto-sp13_S_contig6869.17833.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6869 444..4877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.15756-CDS-Ecto-sp13_S_contig6869:443..5121681463943.15756-CDS-Ecto-sp13_S_contig6869:443..512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 444..512 -
1681463943.1717863-CDS-Ecto-sp13_S_contig6869:948..10761681463943.1717863-CDS-Ecto-sp13_S_contig6869:948..1076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 949..1076 -
1681463943.1811502-CDS-Ecto-sp13_S_contig6869:1174..12861681463943.1811502-CDS-Ecto-sp13_S_contig6869:1174..1286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 1175..1286 -
1681463943.1903112-CDS-Ecto-sp13_S_contig6869:2333..29951681463943.1903112-CDS-Ecto-sp13_S_contig6869:2333..2995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 2334..2995 -
1681463943.200355-CDS-Ecto-sp13_S_contig6869:4281..45121681463943.200355-CDS-Ecto-sp13_S_contig6869:4281..4512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 4282..4512 -
1681463943.209652-CDS-Ecto-sp13_S_contig6869:4783..48771681463943.209652-CDS-Ecto-sp13_S_contig6869:4783..4877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6869 4784..4877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6869.17833.1

>prot_Ecto-sp13_S_contig6869.17833.1 ID=prot_Ecto-sp13_S_contig6869.17833.1|Name=mRNA_Ecto-sp13_S_contig6869.17833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp
YHQGEGHGASSAGVAAASTQATATGGPTTTTVSPAVSPALSNGNNATAMA
AASAWLAKQQQAATAAATAAGGVGGAGSAVPSVNIADNATAVAAASSWLA
KQAAAAIAAATGAAALAVPPTPSAPSPPLPLSSSLTSTTPVSSSSDGALR
QAVGETLPPPSGAAGVVRPGPTTSKAAAAAAAAAAKLVSAPGTVSTATSS
PSSAPVAPPPTPIKGNHFAQPPILWPVLAGMPPAQMAAAAGGGALASPAG
SSPPAAAPGAAAAAAAAAATTATAAPSVLPAGAGGGVAGPSYLQAQPCAG
ATSTAAAPHGTSSHHGHPSQVRRADTAAVLTTGWRRRRRRPRRRRKRRRR
ARRRWRRSRRRWRPAAAGGGGGDAAMAAAAAAAAAAAAAAAAAAGGKGKT
GRSEEVSHSVEALLALKEVFFAQGPGVDVPR*
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mRNA from alignment at Ecto-sp13_S_contig6869:444..4877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6869.17833.1 ID=mRNA_Ecto-sp13_S_contig6869.17833.1|Name=mRNA_Ecto-sp13_S_contig6869.17833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6869:444..4877- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCACCAGGGCGAGGGACACGGCGCTAGCTCCGCTGGTGTTGCCGCGGC
CTCTACTCAGGCGACGGCGACAGGCGGCCCCACCACCACGACAGGTGAGA
TCGGGGAGGCCATTGGCAAAGTCCCTTGACGGTGAATGACCCGTGGGTCG
AAACTAAGCCCTTTGATTTGTTGTGTTGTTTTTTATGCCTTTGTTGGATT
CGACGAGCAATCTTGCCAAATCATCATTTCCGTCTCTCTTTTTTTTTGTC
ATTCGGCGCTACCAACAAACCACCTCTCGTCCCTCTCTCTCGTTGTGCCT
CGCTTGTTTGATGCGCGCGCGCGCGTGTTCCTTTTTTTTTGTTTTTGTAT
TACCGTAATGTTTAGTGTCGCCGGCTGTCTCGCCAGCCCTCTCGAACGGT
AACAATGCGACGGCGATGGCGGCAGCTTCGGCGTGGCTGGCGAAGCAGCA
GCAGGCGGCAACGGCCGCTGCCACGGCGGCGGGAGGGGTTGGGGGGGCTG
GCTCTGCCGTGCCTTCGGTGAACATCGCGGACAACGCTACAGCGGTGGCA
GCGGCTTCTTCCTGGCTGGCGAAGCAGGCGGCAGCGGCCATCGCGGGTGA
GAGGAATGTTACGAGGGAGAAGCGGAACATAGATAGGCAAGCCCATCGTC
CCTACCGTCGATGTGCTTGTATGTAGGAGAAGCACAACGTTCTCCATATC
AGCGTGTGCACGTGGTGGTATCGATGAGTGCACAACATCCCTACGTCGTG
ATCGGGTAGACACTTTTAACAGAGTAGCATTGCGGCCGACCTGCGTACAC
ACGCTGGTCCGATTGAGATCGTTTCCGAGGGCGAGTACTGTACTGCTGTC
TCTGTTGGCGTGGATGTAAGGTCGTCCGGCGGGTACGTGCCGCAAGAGAC
CTCATTCTGGACCCCGTCGTGCGGAATTATTCGCAAGACGAGGGATTGAG
CCTTGCGGGGAGGAAGAGTTGTGCTTTGGGTTTTTTGGTGTGCGGTACTG
GAGACGGGTCGCAAATTAGAGCGTAAAATGGTGTAATCGCTCCAACCTGT
CGGCGAATAAAGAACGCGGTGTTGCTCCCTCACTACCTAGTACCCCCCCC
CAAAAAAAAGGAAAAAAAGTAAGCAAGGGGGGAGGCGTACTCTCACGTTT
TGCATGCCTTGGCGATTAGACCGTGGCCACGCGTCGAGAGGACGGAGCAT
TGTTCCCACAGGACCCGTCACCGATGGCCGATCGTTCCTTCCTACTTCGA
TCTACTTCCCAAGGGTGGCTCAAACGTGTTTTCGCTAGCCCATCTATCCT
ATCGATATCACTTCCCGCCCGTTTAACCTACTTCTTATGGCCAAGCACAG
CTACCATATTCTCCTGGCTGCTCCATGCCTCAATCAATCCCTGTATCACC
CTTCTACTTTTCCCAGCTCAGTCAAGTACAATTCCCTGTCCTTCTTGTAC
AAGCAACGGACATTCCGCAACGTCATTCGAACTTGTCGTTCATCTTCCAC
CTTCCGAAATCTTCGCTTACGTTCGAAGGCCAACGCCCGGTCCTAAATGT
AGCCTTCAGCTTTGTCCCTGTATCCGTTGGTCCACGTCAGTACTCCTTGA
ACCCTATCCCTTCGTGTATTTGGTTTCTTTGTGGGGGAGTCGTCATTCCC
ACATCGAAGTAGACGTATATCTTAGGCGACATGAATCTCATGTAGTGATT
CCCATCCAGTTCATCGCCTGGAACAATGCGTTCGCGTCTAGTGAATAGCA
GCACCGTGGCTTGTTGCTCAAGCCCGCTTTGCCCATCAAGCACCACGTGC
TTCATCGGGTCCTTGTCGTTTTATGTTCTCGTTGCCCTACCTTTGCTCTC
CCCTTGTTTTTTTTGTTTATTTTCTTTTTCAGCGGCGACCGGGGCGGCCG
CGCTTGCCGTCCCCCCGACGCCATCCGCACCATCACCGCCACTACCGCTA
TCATCATCCTTGACATCAACGACGCCCGTGTCGAGCTCAAGCGACGGGGC
GCTACGCCAGGCCGTCGGCGAGACCCTCCCCCCGCCCTCGGGAGCGGCAG
GCGTCGTGAGGCCGGGGCCCACCACATCCAAAGCCGCCGCCGCCGCCGCC
GCCGCCGCTGCGAAGTTGGTGTCGGCCCCCGGAACGGTAAGCACGGCAAC
TTCTTCGCCGTCGTCGGCGCCGGTGGCCCCGCCGCCTACGCCGATCAAGG
GCAACCACTTCGCCCAGCCGCCGATCCTCTGGCCGGTGCTTGCGGGGATG
CCCCCGGCGCAAATGGCGGCGGCGGCGGGAGGGGGGGCACTCGCTTCGCC
GGCAGGGTCTTCCCCCCCGGCCGCTGCCCCGGGTGCCGCCGCCGCCGCCG
CCGCCGCCGCCGCCACTACCGCCACCGCCGCCCCCAGCGTGCTCCCCGCC
GGTGCCGGCGGCGGGGTGGCTGGTCCGAGTTACCTGCAGGCGCAGCCGTG
CGCTGGTGCTACTTCCACCGCCGCTGCTCCGCACGGAACATCGTCTCACC
ACGGACACCCTTCGCAGGTGAGGCGGGCTGACACGGCCGCTGTTGTTGTT
GGGTTTGACTTTTGCGGTGGGTTGTTGCATCGGGTTGTCATCGCTCCCGT
CGTTAGCAGCTGACGGCCGTTGCACAAAAGGTAAACGTTTTTCTTTCACG
AGAGAGTCATTTTGTTTGTTTTTTGTATGTTCTGCCGGGAGGTTTTTGAA
TGATTGGAACATGTCCTGATGGTGCGGTTGGGTGTTGCACCAGAGTCGCC
CACACTTTGGCATACGGCGCCAATGGCGTGCTGCGCGCGTGCCGCGTTAT
GCACCCCCCCCAGCGTCGCCTCGACAATCAGCCGATGGGGTACATGGTGT
TCGGATTCGTTAAGGCGTCTCATCGCGTGCGTTTTCCAGGAGTTCGTGCC
TAGCGAGCACTGCTTATTGAGGCCGAGACGGGGCTTGGTGCGCCAAGAAC
ATTATACGGTGCCCCCCGCCCCCCGACATTATTAACGCAGTTGGCGCTAG
ACGTTGGGGCCACGAACAGTCACTTGCATGCATGTACACATGTGAATTCT
CAAACCGGACTGCTATCGCCTGGGATCTCTCACCCTCCCACGCACATTCC
ACCGCACGGCTGCCCAATTCCTCGTCACCTCGCCATCCCTCTCTCATATG
AGCCCCTACCCCCCCCGCCCCTGCCGTCTTGTCTCTCGCTCTGAAACACG
AAGCAGCAGCAACGGCAGCAGCAATTGCAGCAGCAGCAGCAGCAGCCGGG
TTTGAAGCCGAACGGCAGCACGAACGATGGTGGCCCGCCGTCACCGAGCA
ACGCTACCGCTGCCGCAGCTGCTGCCGCAGCCGCTACGGCCGGTGCCGCT
GTCAGCGGCGCCCCCGGTGCCGCCACCGCCAACGTGTCGCCGCCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
TGCGGAACGGTGCCGGGGTGGTGGTGCCGGGGGCCGGGTTGCTGCCCGGG
TTTTCGTCCATGAAGGACGGCGGCGTCAATATCGATCCGGCTCCGCCGTG
CGCTGCCTCGCTCCCAATCTCATTTGCCGGCGGCGGCGGAGCTGACAACG
GGGTGGCGGCGGCGGCGGCGGCGGCCACGGCGGCGGCGGAAGCGACGGCG
GCGAGCACGCCGTCGGTGGCGTCGTTCGCGACGGCGATGGCGGCCGGCGG
CGGGTACCAGTGGCTGCCGCCCCAGCAGCAGGGGCTCGCGGGCGTGCCCC
CCGGAACGGGAAGCATGACCCCGGCGGCTGCGGCTGCGGCGGCAGCGGCA
GCGGGGGGCGGGGGGGGTGATGCTGCGATGGCAGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCAGCAGCAGCGGCGGCGGCGGCCGGAGGGAAGGGCAAGA
CCGGTCGATCTGAAGAGGTCTCTCACTCTGTGAGCATTTACCTCTTATTT
TTTGTTTGTGTGGGTGTCTCGCGCAGAAGAACCCCCTTTCTGCGACTTTC
GTAGGATTCGTGGGAAATTGGGTATTCCTGCACTATCTTTATAGTCATGC
AGTCCGGCATGTCGGGAAAGCAAAGTTAGCCACCGCAACACCAACAGCAA
GATCGAAGCCTAGATAATGCACATTACCAATGCTCAAAGAAACAGTAGAA
GGCGTGCCCCATTACTCTCAGTTTTGCATCTTCCTTGCGAATGCCATCAC
TTCCAGGCAACCCGCTGTTGATCGGGAATCAAGCGCACCAGCAACAAGCA
CCCAACAGTGATATCACCAACATAACCATTGATCCGTATTAATGGTGGGG
AGGCGTTTACACGGACACCCGTTGATTCCTCTCTCCCCTCCCCCCCCTTT
TTTTGTTGTTGGCAGGTGGAAGCACTGCTGGCACTGAAGGAGGTCTTCTT
CGCGCAGGGACCGGGCGTCGACGTGCCGAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6869:444..4877-

>mRNA_Ecto-sp13_S_contig6869.17833.1 ID=mRNA_Ecto-sp13_S_contig6869.17833.1|Name=mRNA_Ecto-sp13_S_contig6869.17833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6869:444..4877- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCACCAGGGCGAGGGACACGGCGCTAGCTCCGCTGGTGTTGCCGCGGC
CTCTACTCAGGCGACGGCGACAGGCGGCCCCACCACCACGACAGTGTCGC
CGGCTGTCTCGCCAGCCCTCTCGAACGGTAACAATGCGACGGCGATGGCG
GCAGCTTCGGCGTGGCTGGCGAAGCAGCAGCAGGCGGCAACGGCCGCTGC
CACGGCGGCGGGAGGGGTTGGGGGGGCTGGCTCTGCCGTGCCTTCGGTGA
ACATCGCGGACAACGCTACAGCGGTGGCAGCGGCTTCTTCCTGGCTGGCG
AAGCAGGCGGCAGCGGCCATCGCGGCGGCGACCGGGGCGGCCGCGCTTGC
CGTCCCCCCGACGCCATCCGCACCATCACCGCCACTACCGCTATCATCAT
CCTTGACATCAACGACGCCCGTGTCGAGCTCAAGCGACGGGGCGCTACGC
CAGGCCGTCGGCGAGACCCTCCCCCCGCCCTCGGGAGCGGCAGGCGTCGT
GAGGCCGGGGCCCACCACATCCAAAGCCGCCGCCGCCGCCGCCGCCGCCG
CTGCGAAGTTGGTGTCGGCCCCCGGAACGGTAAGCACGGCAACTTCTTCG
CCGTCGTCGGCGCCGGTGGCCCCGCCGCCTACGCCGATCAAGGGCAACCA
CTTCGCCCAGCCGCCGATCCTCTGGCCGGTGCTTGCGGGGATGCCCCCGG
CGCAAATGGCGGCGGCGGCGGGAGGGGGGGCACTCGCTTCGCCGGCAGGG
TCTTCCCCCCCGGCCGCTGCCCCGGGTGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCACTACCGCCACCGCCGCCCCCAGCGTGCTCCCCGCCGGTGCCG
GCGGCGGGGTGGCTGGTCCGAGTTACCTGCAGGCGCAGCCGTGCGCTGGT
GCTACTTCCACCGCCGCTGCTCCGCACGGAACATCGTCTCACCACGGACA
CCCTTCGCAGGTGAGGCGGGCTGACACGGCCGCTGTTCTGACAACGGGGT
GGCGGCGGCGGCGGCGGCGGCCACGGCGGCGGCGGAAGCGACGGCGGCGA
GCACGCCGTCGGTGGCGTCGTTCGCGACGGCGATGGCGGCCGGCGGCGGC
GGGGGGCGGGGGGGGTGATGCTGCGATGGCAGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCAGCAGCAGCGGCGGCGGCGGCCGGAGGGAAGGGCAAGACC
GGTCGATCTGAAGAGGTCTCTCACTCTGTGGAAGCACTGCTGGCACTGAA
GGAGGTCTTCTTCGCGCAGGGACCGGGCGTCGACGTGCCGAGATGA
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