mRNA_Ecto-sp13_S_contig68547.17817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68547.17817.1
Unique NamemRNA_Ecto-sp13_S_contig68547.17817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: UPI001420EBFE (lysylphosphatidylglycerol synthase domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001420EBFE)

HSP 1 Score: 318 bits (815), Expect = 2.490e-107
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 1
Query:    1 MTRFLLRAAAWLLPLAALLYLGFALSHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAVAVILLALLPFSLTGLADLLSFAAPQLPLWALVAAFSLLAVLLFLLLS 537
            MTR LLRAAAWLLPLAALLYLGFALSHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAV VILLALLPFSLTGLADLLSFAAPQLPLWALVAAFSLLAVLLF+LLS
Sbjct:    1 MTRVLLRAAAWLLPLAALLYLGFALSHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAVGVILLALLPFSLTGLADLLSFAAPQLPLWALVAAFSLLAVLLFMLLS 179          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: W4HPU4_9RHOB (Uncharacterized protein n=3 Tax=Roseivivax marinus TaxID=1379903 RepID=W4HPU4_9RHOB)

HSP 1 Score: 65.5 bits (158), Expect = 2.040e-9
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   46 AALLYLGFALSHLDLSEFGGYL-----SNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEI 375
            AAL+ +  AL   +L  FG        +  +L  A  A+++Y A L L A AWS  L++ +  P+   AAV +YA     KYLPGNVFH+ GRQ+ A   G+  +A   AS LE+
Sbjct:   12 AALVVVSLALLARELWRFGPEALRLAATPGLLAGAVAASIVYAALLTLPAAAWSCALRERADAPLVSGAAVLVYARCNILKYLPGNVFHFGGRQVMAREAGWSHRATFLASALEV 126          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A1B1PZV7_9CHLB (Uncharacterized protein n=1 Tax=Prosthecochloris sp. CIB 2401 TaxID=1868325 RepID=A0A1B1PZV7_9CHLB)

HSP 1 Score: 65.1 bits (157), Expect = 2.630e-9
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   76 SHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAV 396
            + LDLS    +L   + G+A +    YG+  +LLA AW   L +F   P S + A+++Y  +  AKYLPGN+FH AGRQ      GY  KA A++++ E LG L+ V
Sbjct:   33 AELDLSRLDSWLFVAMGGLAIV----YGSANFLLAEAWRQLLIQFGEYP-SGKWAIRIYGISQIAKYLPGNIFHLAGRQAYGTSDGYDAKALAKSAVWE-LGLLAVV 133          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A440BKB9_9HYPH (Uncharacterized protein n=5 Tax=Mesorhizobium TaxID=68287 RepID=A0A440BKB9_9HYPH)

HSP 1 Score: 62.8 bits (151), Expect = 1.710e-8
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   34 LLPLAALLYLGFALS----HLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEI 375
            LL LA +L++G  L      +D    G   +   L IA +A  LYGA   LLA  W   L    + PVS   A+  YA + FAKY+PGN+F +AGRQ      G G    A++++ E+
Sbjct:   17 LLGLAGVLFVGIRLQGYAGEIDFRRLG---AGGYLAIAALAG-LYGASNLLLALGWQKLLHHL-QTPVSRSWAIHAYAISQFAKYVPGNIFQFAGRQAIGVAAGIGNGPLAKSTVYEL 129          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: UPI0011AF9AE1 (hypothetical protein n=1 Tax=unclassified Leclercia TaxID=2627398 RepID=UPI0011AF9AE1)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-8
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  118 RVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEIL 378
            ++L +  + A +YGA   LLA AW   L K     +S   A ++Y     AKY+PGN+F +AGRQ+ A   G+  KA A+++ LE+L
Sbjct:   44 KLLALLMLLAAIYGAANALLASAWR-ILMKSLGQAISGRTATRIYGLTQLAKYVPGNIFQFAGRQLLAMSYGFSGKAIAKSAFLELL 129          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A3A5K5V2_9HYPH (Uncharacterized protein n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A3A5K5V2_9HYPH)

HSP 1 Score: 60.8 bits (146), Expect = 8.040e-8
Identity = 53/145 (36.55%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   34 LLPLAALLYLGFALSHLDLSEF-------GGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAVAVILLALLPFSLTGLAD 447
            LL LA ++++G  L H+   E        GGY++  VL      A LYGA   LLA  W   L      PVS   AV+ YA +  AKY+PGN+F +AGRQ      G G    A+++ LE+   +   A+ L  LLP    G+ D
Sbjct:   17 LLGLAGVVFVGTRL-HVYAGEIDFRRMGAGGYVAIAVL------AGLYGASNLLLALGWRRLLAHLG-VPVSYSWAVRAYAISQLAKYVPGNIFQFAGRQAIGLSAGIGNAPLAKSTALELALLVVGGALFLTLLLPLIAAGIPD 153          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A440MCK2_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A440MCK2_9HYPH)

HSP 1 Score: 60.8 bits (146), Expect = 8.260e-8
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1
Query:   34 LLPLAALLYLGFAL----SHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYG 339
            LL LA ++++G  L    S +D   FG   +   + IA +A  LYGA   LLA  W   L    + PVS   A+  YA +  AKY+PGN+F +AGRQ     +G G
Sbjct:   17 LLGLAGVVFVGIRLQGYASEIDFRRFG---AGGYVAIAALAG-LYGASNLLLALGWQKLLHHL-QTPVSRSWAIHAYAVSQLAKYVPGNIFQFAGRQAIGLAVGIG 117          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A7W3BRQ7_9ENTR (Uncharacterized protein n=1 Tax=Citrobacter sp. RHBSTW-00271 TaxID=2742642 RepID=A0A7W3BRQ7_9ENTR)

HSP 1 Score: 60.8 bits (146), Expect = 8.480e-8
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    7 RFLLRAAAWLLPLAALLYLGFALS----HLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEIL 378
            R+LL      L +A +L++G+ L      LDLS+    ++    G+    A++YGA  +LLA+AW   LQ F +   S   +V++Y  +  AKY+PGN+FH AGRQ      G   K+  Q+ L E++
Sbjct:   13 RYLLNWVGSGLAIAGILFIGYRLHSYWLELDLSK----ITLLGWGLIFFLAVVYGAANFLLAYAWWQLLQHFCKYG-SIANSVKIYGKSQLAKYVPGNIFHLAGRQALGMSAGIPTKSLVQSMLWELI 135          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: A0A2N5EM09_9GAMM (Uncharacterized protein n=4 Tax=Yersiniaceae TaxID=1903411 RepID=A0A2N5EM09_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 1.570e-7
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   76 SHLDLSEFGGYLSNRVLGIACIAALLYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEI 375
            S LD + FG       LG+A  AAL YGA   LLAF W+  L  F +    P   V +Y     AKYLPGN+FH+AGRQ      G    A A+++L E+
Sbjct:   33 SQLDPARFG---PAAWLGMAA-AALAYGAANLLLAFGWAQLLACFHQR-CRPRWVVGIYGVTQLAKYLPGNIFHFAGRQALGMAAGLPGGALAKSTLWEL 127          
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Match: L0KTF3_MESAW (Uncharacterized protein n=6 Tax=Mesorhizobium TaxID=68287 RepID=L0KTF3_MESAW)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-7
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 1
Query:   19 RAAAWLLPLAALLYL-GFALSHLDLSEFGGYLSNRVLGIACIAALLYGAGLY-----LLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHYAGRQIAAARLGYGQKAPAQASLLEILGHLSAVAVILLALLPFSLTGLAD 447
            RA  WL  + A L L G     + L  + G +  R +G A   A++  AG+Y     LLA  W   L      PVS   A++ YA +  AKY+PGN+F +AGRQ      G G     +++  E+   +    +    +LP  +TGL D
Sbjct:    6 RAKTWLNRIGAFLGLAGVVFVGIRLQGYTGEIDFRRMGAASYTAIIALAGVYGVSNLLLALGWRHLLHHLGA-PVSRPWAIRTYAISQLAKYVPGNIFQFAGRQAIGVAAGIGNGPLVKSTAYEVAALIVGGLLFSPLVLPLVVTGLPD 153          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68547.17817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001420EBFE2.490e-10798.32lysylphosphatidylglycerol synthase domain-containi... [more]
W4HPU4_9RHOB2.040e-939.13Uncharacterized protein n=3 Tax=Roseivivax marinus... [more]
A0A1B1PZV7_9CHLB2.630e-940.19Uncharacterized protein n=1 Tax=Prosthecochloris s... [more]
A0A440BKB9_9HYPH1.710e-837.29Uncharacterized protein n=5 Tax=Mesorhizobium TaxI... [more]
UPI0011AF9AE12.220e-839.08hypothetical protein n=1 Tax=unclassified Leclerci... [more]
A0A3A5K5V2_9HYPH8.040e-836.55Uncharacterized protein n=3 Tax=Mesorhizobium TaxI... [more]
A0A440MCK2_9HYPH8.260e-838.68Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
A0A7W3BRQ7_9ENTR8.480e-835.16Uncharacterized protein n=1 Tax=Citrobacter sp. RH... [more]
A0A2N5EM09_9GAMM1.570e-742.00Uncharacterized protein n=4 Tax=Yersiniaceae TaxID... [more]
L0KTF3_MESAW2.110e-732.21Uncharacterized protein n=6 Tax=Mesorhizobium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68547contigEcto-sp13_S_contig68547:103..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score64.7
Seed ortholog evalue5e-08
Seed eggNOG ortholog1317118.ATO8_02730
Preferred namemprF
Model size537
KEGG koko:K07027,ko:K20468
KEGG TC4.D.2,4.D.2.4.1
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.lysyltransferase activity
EggNOG OGs1N8EI@1224,2UGNK@28211,COG0392@1,COG0392@2
Cds size537
COG Functional cat.S
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463941.68042-CDS-Ecto-sp13_S_contig68547:102..6391681463941.68042-CDS-Ecto-sp13_S_contig68547:102..639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68547 103..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68547.17817.1prot_Ecto-sp13_S_contig68547.17817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68547 103..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68547.17817.1

>prot_Ecto-sp13_S_contig68547.17817.1 ID=prot_Ecto-sp13_S_contig68547.17817.1|Name=mRNA_Ecto-sp13_S_contig68547.17817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MTRFLLRAAAWLLPLAALLYLGFALSHLDLSEFGGYLSNRVLGIACIAAL
LYGAGLYLLAFAWSACLQKFSRNPVSPEAAVQLYAFATFAKYLPGNVFHY
AGRQIAAARLGYGQKAPAQASLLEILGHLSAVAVILLALLPFSLTGLADL
LSFAAPQLPLWALVAAFSLLAVLLFLLLS
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mRNA from alignment at Ecto-sp13_S_contig68547:103..639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68547.17817.1 ID=mRNA_Ecto-sp13_S_contig68547.17817.1|Name=mRNA_Ecto-sp13_S_contig68547.17817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68547:103..639- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGGTTCTTGCTGCGCGCCGCCGCCTGGCTGTTGCCCCTTGCGGC CCTACTCTATCTGGGCTTCGCCCTTAGCCACCTCGATCTCTCAGAATTCG GCGGCTACCTGAGCAACCGGGTTCTGGGAATCGCCTGCATCGCCGCGCTG CTCTATGGCGCCGGGCTCTATCTTCTGGCTTTCGCGTGGTCGGCCTGCCT GCAGAAATTTTCAAGAAACCCGGTCAGCCCGGAAGCGGCGGTGCAACTCT ATGCCTTTGCCACCTTCGCCAAGTACCTTCCGGGCAATGTCTTTCACTAT GCCGGCCGGCAGATTGCTGCCGCCCGCCTCGGTTACGGCCAGAAGGCACC GGCACAGGCCAGTCTGCTGGAAATCCTGGGGCACCTCTCAGCAGTCGCGG TGATCCTGTTGGCTTTGCTGCCTTTCTCGCTGACGGGATTGGCCGATCTG CTGTCATTTGCCGCCCCGCAACTTCCGCTCTGGGCTTTGGTTGCGGCCTT CAGCCTTCTGGCAGTGCTCCTCTTCTTGCTGCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68547:103..639-

>mRNA_Ecto-sp13_S_contig68547.17817.1 ID=mRNA_Ecto-sp13_S_contig68547.17817.1|Name=mRNA_Ecto-sp13_S_contig68547.17817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68547:103..639- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGGTTCTTGCTGCGCGCCGCCGCCTGGCTGTTGCCCCTTGCGGC
CCTACTCTATCTGGGCTTCGCCCTTAGCCACCTCGATCTCTCAGAATTCG
GCGGCTACCTGAGCAACCGGGTTCTGGGAATCGCCTGCATCGCCGCGCTG
CTCTATGGCGCCGGGCTCTATCTTCTGGCTTTCGCGTGGTCGGCCTGCCT
GCAGAAATTTTCAAGAAACCCGGTCAGCCCGGAAGCGGCGGTGCAACTCT
ATGCCTTTGCCACCTTCGCCAAGTACCTTCCGGGCAATGTCTTTCACTAT
GCCGGCCGGCAGATTGCTGCCGCCCGCCTCGGTTACGGCCAGAAGGCACC
GGCACAGGCCAGTCTGCTGGAAATCCTGGGGCACCTCTCAGCAGTCGCGG
TGATCCTGTTGGCTTTGCTGCCTTTCTCGCTGACGGGATTGGCCGATCTG
CTGTCATTTGCCGCCCCGCAACTTCCGCTCTGGGCTTTGGTTGCGGCCTT
CAGCCTTCTGGCAGTGCTCCTCTTCTTGCTGCTGTCG
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